Delineation of species within the Trichoderma viride/atroviride/koningii complex by UP-PCR cross-blot hybridization.

Abstract:

:Sequences from the ribosomal DNA ITS regions have shown that there is limited variation among the species in the Trichoderma viride/atroviride/koningii species complex also known as Hypocrea rufa complex, and that infraspecies variation sometimes is larger than interspecies variation. Strains belonging to T. viride, T. atroviride, T. koningii, T. asperellum, and respective teleomorphs were analyzed using cross-blot hybridization of PCR products generated by the universally primed PCR (UP-PCR) technique. The hybridization results showed that the morphologically defined species could be delineated molecularly, suggesting that the species are more separated than indicated by ITS sequence phylogeny. However, cross-hybridization signals at infra- and interspecies level within this species complex was overlapping, again raising the question of how many species there are. Due to the heterogeneity of T. viride revealed, a further revision of this species is needed. In addition, this study shows that a macroarray (DNA chip) containing membrane-bound UP-PCR products for reference strains can be developed for routine identification of Trichoderma strains.

journal_name

FEMS Microbiol Lett

authors

Lübeck M,Bulat S,Alekhina I,Lieckfeldt E

doi

10.1016/j.femsle.2004.06.041

keywords:

subject

Has Abstract

pub_date

2004-08-15 00:00:00

pages

255-60

issue

2

eissn

0378-1097

issn

1574-6968

pii

S0378-1097(04)00460-4

journal_volume

237

pub_type

杂志文章
  • Mycobacterium marinum biofilm formation reveals cording morphology.

    abstract::Abstract The emergence of the nontuberculosis mycobacteria (NTM) as clinically relevant pathogens has warranted the study of these ubiquitous organisms in the context of their likely environmental niche, the biofilm. We assayed the NTM bacterium Mycobacterium marinum strain 1218R, a fish outbreak isolate, for biofilm ...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2006.00143.x

    authors: Hall-Stoodley L,Brun OS,Polshyna G,Barker LP

    更新日期:2006-04-01 00:00:00

  • Construction of a family of lactococcal vectors for gene cloning and translational fusion.

    abstract::A family of stable lactococcal vectors have been constructed based on the pFX1 replicon using either the alpha fragment or the complete Escherichia coli lacZ gene as a selective marker. These vectors also incorporate multiple cloning sites and examples are given of their use for gene cloning and translational fusion s...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1991.tb04321.x

    authors: Xu FF,Pearce LE,Yu PL

    更新日期:1991-01-01 00:00:00

  • The amo operon in marine, ammonia-oxidizing gamma-proteobacteria.

    abstract::While there is an extensive database of genes encoding ammonia monooxygenase (amo) found in the ammonia-oxidizing beta-proteobacteria, few amo sequences are available representing the gamma-proteobacteria. We sequenced the complete amo operon (amoCAB) for Nitrosococcus oceani (ATCC 19707), a marine, autotrophic, ammon...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1999.tb08773.x

    authors: Alzerreca JJ,Norton JM,Klotz MG

    更新日期:1999-11-01 00:00:00

  • Inhibition of aerobic respiration and dissimilatory perchlorate reduction using cyanide.

    abstract::The effect of low concentrations of cyanide on dissimilatory perchlorate and chlorate reduction and aerobic respiration was examined using pure cultures of Azospira sp. KJ. Cyanide at a concentration of 38 microM inhibited cell growth on perchlorate, chlorate and molecular oxygen, but it did not inhibit the activity o...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1016/j.femsle.2004.08.031

    authors: Song Y,Logan BE

    更新日期:2004-10-15 00:00:00

  • ABC transporters in antibiotic-producing actinomycetes.

    abstract::Many antibiotic-producing actinomycetes possess at least one ABC (ATP-binding cassette) transporter which forms part of the antibiotic biosynthetic pathway and in most cases confers resistance to the drug in an heterologous host. Three types of antibiotic ABC transporters have been so far described in producer organis...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6968.1998.tb12792.x

    authors: Méndez C,Salas JA

    更新日期:1998-01-01 00:00:00

  • Mutation of rpoS enhances Pseudomonas sp. KL28 growth at higher concentrations of m-cresol and changes its surface-related phenotypes.

    abstract::A Tn5 transposon mutant was isolated of the alkylphenol degrader Pseudomonas sp. KL28 that showed increased growth at higher levels of m-cresol on solid and in liquid cultures. The transposon was inserted at the 5'-terminus of rpoS, which encodes a stationary-phase sigma factor. When grown on agar plates, the rpoS mut...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2006.00610.x

    authors: Yun JI,Cho KM,Kim JK,Lee SO,Cho K,Lee K

    更新日期:2007-04-01 00:00:00

  • Construction and transduction of a shuttle vector bearing the cos site of Streptomyces phage phi C31 and determination of its cohesive ends.

    abstract::A plasmid has been constructed which is a bifunctional vector for Escherichia coli and for streptomycetes, containing the cos site of Streptomyces phage phi C31. It can be efficiently transduced into S. lividans 66 and into several other Streptomyces species. The nucleotide sequence of a 311-bp DNA fragment containing...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1016/0378-1097(91)90183-b

    authors: Kobler L,Schwertfirm G,Schmieger H,Bolotin A,Sladkova I

    更新日期:1991-03-01 00:00:00

  • Environmental regulation of the long polar fimbriae 2 of enterohemorrhagic Escherichia coli O157:H7.

    abstract::The molecular mechanisms controlling expression of the long polar fimbriae 2 (Lpf2) of enterohemorrhagic Escherichia coli (EHEC) O157:H7 were evaluated. Primer extension was used to locate the lpfA2 transcriptional start site in EHEC strain EDL933 at 171 bp upstream of the lpfA2 start codon. Semi-quantitative RT-PCR d...

    journal_title:FEMS microbiology letters

    pub_type: 信件

    doi:10.1111/1574-6968.12513

    authors: Arenas-Hernández MM,Rojas-López M,Medrano-López A,Nuñez-Reza KJ,Puente JL,Martínez-Laguna Y,Torres AG

    更新日期:2014-08-01 00:00:00

  • Rhizobium leguminosarum bv. trifolii rosR gene expression is regulated by catabolic repression.

    abstract::Rhizobium leguminosarum bv. trifolii rosR gene encodes a transcriptional regulator involved in the positive regulation of exopolysaccharide synthesis. Transcription of rosR is directed by two promoters, distal P1 and proximal P2, of different strengths. We demonstrated that rosR P1 functions as the main promoter and, ...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2008.01443.x

    authors: Janczarek M,Skorupska A

    更新日期:2009-02-01 00:00:00

  • Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus.

    abstract::The glycolytic pathway of the hyperthermophilic archaea that belong to the order Thermococcales (Pyrococcus, Thermococcus and Palaeococcus) differs significantly from the canonical Embden-Meyerhof pathway in bacteria and eukarya. This archaeal glycolysis variant consists of several novel enzymes, some of which catalyz...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2006.00292.x

    authors: van de Werken HJ,Verhees CH,Akerboom J,de Vos WM,van der Oost J

    更新日期:2006-07-01 00:00:00

  • Biochemical and molecular characterization of a lipase produced by Rhizopus oryzae.

    abstract::A novel strain of Rhizopus oryzae WPG secretes a noninduced lipase (ROLw) in the culture medium; purified ROLw is a protein of 29 kDa, the 45 N-terminal amino acid residues were sequenced, this sequence is very homologous to Rhizopus delemar lipase (RDL), Rhizopus niveus lipase (RNL) and R. oryzae lipase (ROL29) seque...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2006.00323.x

    authors: Salah RB,Mosbah H,Fendri A,Gargouri A,Gargouri Y,Mejdoub H

    更新日期:2006-07-01 00:00:00

  • Transcriptome analysis of the Mg2+-responsive PhoP regulator in Yersinia pestis.

    abstract::PhoP was previously shown to be important for Yersinia pestis survival in macrophage and under macrophage-induced stresses. In this work, a phoP disruptant of Y. pestis 201 was generated using the Red cloning procedure. The transcription profile of the wild-type Y. pestis was then compared with that of the phoP mutant...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1016/j.femsle.2005.06.053

    authors: Zhou D,Han Y,Qin L,Chen Z,Qiu J,Song Y,Li B,Wang J,Guo Z,Du Z,Wang X,Yang R

    更新日期:2005-09-01 00:00:00

  • Positively regulated expression of the Escherichia coli araBAD promoter in Corynebacterium glutamicum.

    abstract::In Corynebacterium glutamicum the promoter of the araBAD Escherichia coli gene is positively regulated by both arabinose and the araC gene product, as it is the case in the natural host. If the L-arabinose inducer and an active araC gene are present, significant amounts of araBAD promoter expression take place in the ...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1999.tb13558.x

    authors: Ben-Samoun K,Leblon G,Reyes O

    更新日期:1999-05-01 00:00:00

  • Catalase-peroxidase activity is decreased in a Caulobacter crescentus rho mutant.

    abstract::A Caulobacter crescentus rho::Tn5 mutant strain presenting a partially functional transcription termination factor Rho is highly sensitive to hydrogen peroxide in both exponential and stationary phases. The mutant was shown to be permanently under oxidative stress, based on fluorophore oxidation, and also to be sensit...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2009.01860.x

    authors: Italiani VC,Braz VS,Xiao H,Steinman HM,Marques MV

    更新日期:2010-02-01 00:00:00

  • Why two are not enough: degradation of p-toluenesulfonate by a bacterial community from a pristine site in Moorea, French Polynesia.

    abstract::In previous work, only one culture (strain TA12) from a pristine site was reported to utilize the xenobiotic compound p-toluenesulfonate (TSA) as a sole source of carbon and energy for aerobic growth. 'Strain TA12' has now been recognized as a community of three bacteria: Achromobacter xylosoxidans TA12-A, Ensifer adh...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2010.02207.x

    authors: Tralau T,Yang EC,Tralau C,Cook AM,Küpper FC

    更新日期:2011-03-01 00:00:00

  • EnvC, a new lipoprotein of the cytoplasmic membrane of Escherichia coli.

    abstract::A gene product with an apparent molecular mass of approximately 39,000 Da can be identified in the cytoplasmic membrane of Escherichia coli upon expression of cloned envC. In this communication we report that the product was labelled with [3H]glycerol and [3H]palmitic acid, and a precursor molecule of increased molecu...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1993.tb06026.x

    authors: Seiffer D,Klein JR,Plapp R

    更新日期:1993-03-01 00:00:00

  • Zinc content of the Bacillus anthracis lethal factor.

    abstract::We present evidence that the anthrax toxin lethal factor binds multiple zinc atoms. Results from atomic adsorption spectroscopy indicate that lethal factor contains approximately three zinc atoms per toxin molecule. Lethal factor treated with EDTA and o-phenanthroline contained a similar number of zinc atoms, indicati...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1994.tb07306.x

    authors: Kochi SK,Schiavo G,Mock M,Montecucco C

    更新日期:1994-12-15 00:00:00

  • Identification of in vivo essential genes from Pseudomonas aeruginosa by PCR-based signature-tagged mutagenesis.

    abstract::We adapted PCR-based signature-tagged mutagenesis (STM) to Pseudomonas aeruginosa. A collection of 1056 mutants was screened in a chronic lung infection rat model. Thirteen mutants were confirmed to be attenuated. Analysis revealed that these STM mutants represented transposon insertions into eight genes previously de...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2002.tb11162.x

    authors: Lehoux DE,Sanschagrin F,Levesque RC

    更新日期:2002-04-23 00:00:00

  • Inactivation of the petE gene encoding plastocyanin causes different photosynthetic responses in cyanobacterium Synechocystis PCC 6803 under light-dark photoperiod and continuous light conditions.

    abstract::Plastocyanin, encoded by the petE gene, can transfer electrons to photosystem I (PSI) and cytochrome c oxidase during photosynthetic and respiratory metabolism in cyanobacteria. We constructed a petE mutant of Synechocystis sp. strain PCC 6803 and investigated its phenotypic properties under different light conditions...

    journal_title:FEMS microbiology letters

    pub_type: 信件

    doi:10.1111/1574-6968.12101

    authors: Wang XQ,Jiang HB,Zhang R,Qiu BS

    更新日期:2013-04-01 00:00:00

  • Metabolism of phenylbenzoate by Pseudomonas sp. strain TR3.

    abstract::A bacterial isolate, tentatively identified as Pseudomonas sp. strain TR3, was found to utilize the diaryl ester phenylbenzoate as sole source of carbon and energy. This strain has the ability to productively degrade phenylbenzoate and some substituted derivatives by a catabolic sequence which was characterized bioche...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1999.tb13700.x

    authors: Reich T,Schmidt S,Fortnagel P

    更新日期:1999-07-15 00:00:00

  • Cloning and expression of the D-ribulose-1,5-bisphosphate carboxylase/oxygenase form II gene from Thiobacillus intermedius in Escherichia coli.

    abstract::Both form I and II ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) genes were detected in Thiobacillus intermedius by heterologous hybridization using specific probes from Anacystis nidulans and Rhodobacter sphaeroides, respectively. However, only the previously reported form I enzyme could be demonstrated i...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1993.tb06044.x

    authors: Stoner MT,Shively JM

    更新日期:1993-03-01 00:00:00

  • Cytochrome c maturation proteins are critical for in vivo growth of Legionella pneumophila.

    abstract::Legionella pneumophila, an intracellular parasite of macrophages and protozoa, requires iron for extra- and intracellular growth. In a new screen of a mutant library of L. pneumophila for strains defective for growth on agar media lacking supplemental iron, seven mutants were obtained. All of the mutants had a disrupt...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1016/j.femsle.2004.10.028

    authors: Naylor J,Cianciotto NP

    更新日期:2004-12-15 00:00:00

  • Transcriptional repressor Rex is involved in regulation of oxidative stress response and biofilm formation by Streptococcus mutans.

    abstract::The transcriptional repressor Rex has been implicated in the regulation of energy metabolism and fermentative growth in response to redox potential. Streptococcus mutans, the primary causative agent of human dental caries, possesses a gene that encodes a protein with high similarity to members of the Rex family of pro...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2011.02293.x

    authors: Bitoun JP,Nguyen AH,Fan Y,Burne RA,Wen ZT

    更新日期:2011-07-01 00:00:00

  • Production of volatile organic compounds by mycobacteria.

    abstract::The need for improved rapid diagnostic tests for tuberculosis disease has prompted interest in the volatile organic compounds (VOCs) emitted by Mycobacterium tuberculosis complex bacteria. We have investigated VOCs emitted by Mycobacterium bovis BCG grown on Lowenstein-Jensen media using selected ion flow tube mass sp...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2011.02493.x

    authors: McNerney R,Mallard K,Okolo PI,Turner C

    更新日期:2012-03-01 00:00:00

  • Microbiome characterization of poultry products based on the poultry part and production label.

    abstract::Poultry is one of the most consumed meats worldwide and there are many different types of poultry products available on the market for consumers. Many poultry producers provide a variety of labeled meats based on rearing system such as organic, free-range and antibiotic-free. However, these labels often can be mislead...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1093/femsle/fnz092

    authors: Lee SI,Choi J,Daeschel DZ,Park SH

    更新日期:2019-05-01 00:00:00

  • Magnaporthe oryzae endopolygalacturonase homolog correlates with density-dependent conidial germination.

    abstract::Endopolygalacturonases (endoPGs) of some phytopathogens are virulent factors for dicots. To investigate the function of the endoPG of Magnaporthe oryzae, a disruption mutant of MGG_08938, the homolog of endoPG found in the genome database of this fungus, was generated. The pathogenicity, mycelial growth, and appressor...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2008.01062.x

    authors: Mori T,Jung HY,Maejima K,Hirata H,Himeno M,Hamamoto H,Namba S

    更新日期:2008-03-01 00:00:00

  • The mode of action of the plant antimicrobial peptide MiAMP1 differs from that of its structural homologue, the yeast killer toxin WmKT.

    abstract::The plant antimicrobial peptide MiAMP1 from Macadamia integrifolia and the yeast killer toxin peptide WmKT from Williopsis mrakii are structural homologues. Comparative studies of yeast mutants were performed to test their sensitivity to these two antimicrobial peptides. No differences in susceptibility to MiAMP1 were...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1016/j.femsle.2004.12.007

    authors: Stephens C,Kazan K,Goulter KC,Maclean DJ,Manners JM

    更新日期:2005-02-01 00:00:00

  • Maricurvus nonylphenolicus gen. nov., sp. nov., a nonylphenol-degrading bacterium isolated from seawater.

    abstract::A novel aerobic, Gram-negative bacterial strain, designated KU41E(T), which degrades p-n-nonylphenol, was isolated from seawater obtained from the coastal region of Ishigaki Island, Japan. Cells are motile, curved rods with a single polar flagellum. Strain KU41E(T) grew at 20-35 °C, pH 7.0-8.0, in the presence of 1.0-...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.2011.02471.x

    authors: Iwaki H,Takada K,Hasegawa Y

    更新日期:2012-02-01 00:00:00

  • The ligase chain reaction distinguishes hepatitis B virus S-gene variants.

    abstract::A novel method for the identification of hepatitis B virus (HBV) variants was developed. The ligase chain reaction (LCR) distinguished the sequences of two isolates from the Gambia showing a change at nucleotide 421 within the region coding for the surface protein a antigenic determinant. One sequence was derived from...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/j.1574-6968.1995.tb07766.x

    authors: Karthigesu VD,Mendy M,Fortuin M,Whittle HC,Howard CR,Allison LM

    更新日期:1995-09-01 00:00:00

  • Characterization of a replication locus and formation of a higher-order complex between RepA protein and two inverted repeats in Streptomyces plasmid pSV1.

    abstract::We identified the minimal locus of 163-kb plasmid pSV1 of Streptomyces violaceoruber for the replication in S. lividans. This locus comprised a repA gene and an upstream 407-bp sequence containing two inverted repeats (IR-III and IR-IV) within an iteron, an AT-rich region and a 300-bp noncoding sequence (NCS). RepA pr...

    journal_title:FEMS microbiology letters

    pub_type: 杂志文章

    doi:10.1111/1574-6968.12307

    authors: Chen Y,Tan H,Qin Z

    更新日期:2013-12-01 00:00:00