Abstract:
:Colocalization of proteins that are part of the same signal transduction pathway via compartmentalization, scaffold, or anchor proteins is an essential aspect of the signal transduction system in eukaryotic cells. If interaction must occur via free diffusion, then the spatial separation between the sources of the two interacting proteins and their degradation rates become primary determinants of the time required for interaction. To understand the role of such colocalization, we create a mathematical model of the diffusion based protein-protein interaction process. We assume that mRNAs, which serve as the sources of these proteins, are located at different positions in the cytoplasm. For large cells such as Drosophila oocytes we show that if the source mRNAs were at random locations in the cell rather than colocalized, the average rate of interactions would be extremely small, which suggests that localization is needed to facilitate protein interactions and not just to prevent cross-talk between different signaling modules.
journal_name
Proc Natl Acad Sci U S Aauthors
Batada NN,Shepp LA,Siegmund DOdoi
10.1073/pnas.0401314101keywords:
subject
Has Abstractpub_date
2004-04-27 00:00:00pages
6445-9issue
17eissn
0027-8424issn
1091-6490pii
0401314101journal_volume
101pub_type
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