Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized.

Abstract:

:Colocalization of proteins that are part of the same signal transduction pathway via compartmentalization, scaffold, or anchor proteins is an essential aspect of the signal transduction system in eukaryotic cells. If interaction must occur via free diffusion, then the spatial separation between the sources of the two interacting proteins and their degradation rates become primary determinants of the time required for interaction. To understand the role of such colocalization, we create a mathematical model of the diffusion based protein-protein interaction process. We assume that mRNAs, which serve as the sources of these proteins, are located at different positions in the cytoplasm. For large cells such as Drosophila oocytes we show that if the source mRNAs were at random locations in the cell rather than colocalized, the average rate of interactions would be extremely small, which suggests that localization is needed to facilitate protein interactions and not just to prevent cross-talk between different signaling modules.

authors

Batada NN,Shepp LA,Siegmund DO

doi

10.1073/pnas.0401314101

keywords:

subject

Has Abstract

pub_date

2004-04-27 00:00:00

pages

6445-9

issue

17

eissn

0027-8424

issn

1091-6490

pii

0401314101

journal_volume

101

pub_type

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