Simultaneous detection and differentiation of Rice black streaked dwarf virus (RBSDV) and Southern rice black streaked dwarf virus (SRBSDV) by duplex real time RT-PCR.

Abstract:

BACKGROUND:The diseases caused by Rice black streaked dwarf virus (RBSDV) and Southern rice black streaked dwarf virus (SRBSDV) have been occurring epidemically in China and southeastern Asia in recent years. A sensitive, reliable and quantitative method is required to detect and distinguish for RBSDV and SRBSDV in rice and vector insects. RESULTS:We developed a sensitive and lineage-specific duplex real time RT-qPCR for detection of RBSDV and SRBSDV in a single or/and double infection in rice samples. The duplex RT-qPCR was optimized using standard samples transcribed by T7 Large Scale RNA Production System in vitro. We developed a reliable system for duplex RT-qPCR, in which its co-efficiency of RBSDV and SRBSDV, were 91.6% and 90.7%, respectively. The coefficient of determination was more than 0.990; the slope of linear equation was -3.542, and -3.567, respectively. Out of 30 samples collected in North and Central China, which were suspected to be infected with these two viruses, 10 samples were detected RBSDV positive by RT-PCR and 12 samples by RT-qPCR. No mixed infections were found. Simultaneously, out of total 60 samples collected from Southern China, which were also suspected to be infected with these two viruses, 41 samples were determined SRBSDV positive by RT-PCR and 47 samples by RT-qPCR. Also in this case no mixed infections were found. The rice genes eEF-1a and UBQ5 were selected as internal controls for quantification assay also performed as good expression stability. CONCLUSION:The duplex RT-qPCR assay provided as a sufficiently sensitive, specific, accurate, reproducible and rapid tool for the detection and differentiation of RBSDV and SRBSDV. The RT-qPCR assay can be used in routine diagnostic of these two viruses in order to study the disease epidemiology in rice crops.

journal_name

Virol J

journal_title

Virology journal

authors

Zhang P,Mar TT,Liu W,Li L,Wang X

doi

10.1186/1743-422X-10-24

subject

Has Abstract

pub_date

2013-01-18 00:00:00

pages

24

issn

1743-422X

pii

1743-422X-10-24

journal_volume

10

pub_type

杂志文章
  • Caveolin-1 influences human influenza A virus (H1N1) multiplication in cell culture.

    abstract:BACKGROUND:The threat of recurring influenza pandemics caused by new viral strains and the occurrence of escape mutants necessitate the search for potent therapeutic targets. The dependence of viruses on cellular factors provides a weak-spot in the viral multiplication strategy and a means to interfere with viral multi...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-7-108

    authors: Sun L,Hemgård GV,Susanto SA,Wirth M

    更新日期:2010-05-26 00:00:00

  • Full-length genome sequence analysis of enzootic nasal tumor virus isolated from goats in China.

    abstract:BACKGROUND:Enzootic nasal tumor virus (ENTV) is a betaretrovirus of sheep (ENTV-1) and goats (ENTV-2) associated with neoplastic transformation of epithelial cells of the ethmoid turbinate. Confirmation of the role of ENTV in the pathogenesis of enzootic nasal adenocarcinoma (ENA) has yet to be resolved due to the inab...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-017-0795-4

    authors: He Y,Zhang Q,Wang J,Zhou M,Fu M,Xu X

    更新日期:2017-07-26 00:00:00

  • Semi-quantitative Influenza A population averages from a multiplex respiratory viral panel (RVP): potential for reflecting target sequence changes affecting the assay.

    abstract:BACKGROUND:Yearly influenza virus mutations potentially affect the performance of molecular assays, if nucleic acid changes involve the sequences in the assay. Because individual patient viral loads depend on variables such as duration of illness, specimen type, age, and immunosuppression, we examined seasonal populati...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-017-0796-3

    authors: Rand KH,Pieretti M,Arcenas R,Beal SG,Houck H,Boslet E,Lednicky JA

    更新日期:2017-07-14 00:00:00

  • Quantitative profiling of housekeeping and Epstein-Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray.

    abstract:BACKGROUND:The Epstein-Barr virus (EBV) is associated with lymphoid malignancies, including Burkitt's lymphoma (BL), and can transform human B cells in vitro. EBV-harboring cell lines are widely used to investigate lymphocyte transformation and oncogenesis. Qualitative EBV gene expression has been extensively described...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-3-43

    authors: Bernasconi M,Berger C,Sigrist JA,Bonanomi A,Sobek J,Niggli FK,Nadal D

    更新日期:2006-06-06 00:00:00

  • A novel DNA vaccine expressing the Ag85A-HA2 fusion protein provides protection against influenza A virus and Staphylococcus aureus.

    abstract::Secondary pneumonia due to Staphylococcus aureus (S. aureus) causes significant morbidity and mortality. The aim of the research was designed a novel DNA vaccine encoding the Mycobacterium tuberculosis secreted antigen Ag85A fused with the influenza A virus (IAV) HA2 protein to provide protection against both influenz...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-10-40

    authors: Dai J,Pei D,Wang B,Kuang Y,Ren L,Cao K,Zuo B,Shao J,Li S,Jiang Z,Li H,Li M

    更新日期:2013-01-31 00:00:00

  • Neutralization sensitivity of HIV-1 subtype B' clinical isolates from former plasma donors in China.

    abstract:BACKGROUND:HIV-1 subtype B' isolates have been predominantly circulating in China. Their intra- and inter-subtype neutralization sensitivity to autologous and heterologous plasmas has not been well studied. RESULTS:Twelve HIV-1 B' clinical isolates obtained from patients were tested for their intra- and inter-subtype ...

    journal_title:Virology journal

    pub_type: 杂志文章,多中心研究

    doi:10.1186/1743-422X-10-10

    authors: OuYang Y,Sun J,Huang Y,Lu L,Xu W,Hu X,Hong K,Jiang S,Shao Y,Ma L

    更新日期:2013-01-05 00:00:00

  • First isolation and genetic characterization of pseudocowpox virus from cattle in Japan.

    abstract:BACKGROUND:Pseudocowpox virus (PCPV) infects cattle worldwide with zoonotic potential but has not been isolated in Japan. Thus, the epidemiological status of PCPV infection in cattle is undetermined. RESULTS:In May 2016, a cattle in a farm in Yamaguchi Prefecture showed white vesicles and hyperemia in the mucosa under...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-017-0840-3

    authors: Ohtani A,Yokoyama A,Narushige H,Inoshima Y

    更新日期:2017-09-06 00:00:00

  • Manipulation of immunodominant dengue virus E protein epitopes reduces potential antibody-dependent enhancement.

    abstract:BACKGROUND:Dengue viruses (DENV) are the most important arboviruses of humans and cause significant disease. Infection with DENV elicits antibody responses to the envelope glycoprotein, predominantly against immunodominant, cross-reactive, weakly-neutralizing epitopes. These weakly-neutralizing antibodies are implicate...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-9-115

    authors: Hughes HR,Crill WD,Chang GJ

    更新日期:2012-06-18 00:00:00

  • Herpes simplex virus type 2 infection triggers AP-1 transcription activity through TLR4 signaling in genital epithelial cells.

    abstract:BACKGROUND:The pattern recognition receptors (PPRs) are the earliest phase of the host defense against pathogens in genital epithelium, and toll-like receptors (TLRs) are best characterized PPRs mediating innate immune responses. Herpes simplex virus type 2 (HSV-2), a member of herpesviridae family, causes one of the m...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-018-1087-3

    authors: Lv X,Wang H,Su A,Xu S,Chu Y

    更新日期:2018-11-12 00:00:00

  • Bat origin of human coronaviruses.

    abstract::Bats have been recognized as the natural reservoirs of a large variety of viruses. Special attention has been paid to bat coronaviruses as the two emerging coronaviruses which have caused unexpected human disease outbreaks in the 21st century, Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Middle East Re...

    journal_title:Virology journal

    pub_type: 杂志文章,评审

    doi:10.1186/s12985-015-0422-1

    authors: Hu B,Ge X,Wang LF,Shi Z

    更新日期:2015-12-22 00:00:00

  • Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report.

    abstract:BACKGROUND:Human pegivirus (HPgV) is structurally similar to hepatitis C virus (HCV) and was discovered 20 years ago. Its distribution, natural history and exact rule of this viral group in human hosts remain unclear. Our aim was to determine, by deep next-generation sequencing (NGS), the entire genome sequence of HPgV...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-019-1242-5

    authors: Soliman HK,Abouelhoda M,El Rouby MN,Ahmed OS,Esmat G,Hassan ZK,Hafez MM,Mehaney DA,Selvaraju M,Darwish RK,Osman YA,Zekri AN

    更新日期:2019-11-11 00:00:00

  • Molecular characterization of echovirus 30-associated outbreak of aseptic meningitis in Guangdong in 2012.

    abstract:BACKGROUND:Evaluation of the primary etiologic agents that cause aseptic meningitis outbreaks may provide valuable information regarding the prevention and management of aseptic meningitis. An outbreak of aseptic meningitis occurred from May to June, 2012, in Guangdong Province, China. In order to determine the etiolog...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-10-263

    authors: Xiao H,Guan D,Chen R,Chen P,Monagin C,Li W,Su J,Ma C,Zhang W,Ke C

    更新日期:2013-08-23 00:00:00

  • Increased frequency of follicular helper T cells in mice viral myocarditis is relevant with anti-ANT antoantibody.

    abstract:BACKGROUND:Recently, a new subset of CD4(+)T helper cell termed Follicular helper T cells (Tfh), which play a pivotal role in B cell activation and differentiation in lymphoid structures, has been reported to participate in some certain autoimmune diseases. But whether Tfh cells are involved in the pathogenesis of VMC ...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-015-0257-9

    authors: Yang F,Mo WH,Tan BP,Wei XM,Wang H

    更新日期:2015-02-11 00:00:00

  • Metagenomic analysis of the RNA fraction of the fecal virome indicates high diversity in pigs infected by porcine endemic diarrhea virus in the United States.

    abstract:BACKGROUND:Emergence and re-emergence of porcine epidemic diarrhea virus (PEDV) in North America, Asia and Europe has caused severe economic loss to the global swine industry. However, the virome of PEDV infected pigs and its effect on disease severity remains unknown. The advancements of sequencing technology have mad...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-018-1001-z

    authors: Chen Q,Wang L,Zheng Y,Zhang J,Guo B,Yoon KJ,Gauger PC,Harmon KM,Main RG,Li G

    更新日期:2018-05-25 00:00:00

  • Specific and quantitative detection of Human polyomaviruses BKPyV and JCPyV in the healthy Pakistani population.

    abstract:BACKGROUND:The BK Polyomavirus (BKPyV) and JC polyomavirus (JCPyV) infections are widespread in human population and have been associated with severe kidney and brain disorders, respectively. The viruses remain latent primarily in reno-urinary tract, reactivating only in case of a compromised immune system. The seroepi...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-017-0752-2

    authors: Hussain I,Tasneem F,Umer M,Pervaiz A,Raza M,Arshad MI,Shahzad N

    更新日期:2017-04-24 00:00:00

  • Selection of recombinant MVA by rescue of the essential D4R gene.

    abstract::Modified vaccinia virus Ankara (MVA) has become a promising vaccine vector due to its immunogenicity and its proven safety in humans. As a general approach for stringent and rapid selection of recombinant MVA, we assessed marker rescue of the essential viral D4R gene in an engineered deletion mutant that is fully repl...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-8-529

    authors: Ricci PS,Schäfer B,Kreil TR,Falkner FG,Holzer GW

    更新日期:2011-12-12 00:00:00

  • Current status and future directions in the management of chronic hepatitis C.

    abstract::Hepatitis C virus (HCV) is endemic worldwide, and it causes cirrhosis and other complications that often lead to death; nevertheless, our knowledge of the disease and its mechanisms is limited. HCV is most common in underdeveloped nations, including many in Africa and Asia. The virus is usually transmitted by parenter...

    journal_title:Virology journal

    pub_type: 杂志文章,评审

    doi:10.1186/1743-422X-9-57

    authors: Aman W,Mousa S,Shiha G,Mousa SA

    更新日期:2012-03-02 00:00:00

  • Comparative study between the Hybrid Capture II test and PCR based assay for the detection of human papillomavirus DNA in oral submucous fibrosis and oral squamous cell carcinoma.

    abstract:BACKGROUND:Oral malignancy is a major global health problem. Besides the main risk factors of tobacco, smoking and alcohol, infection by human papillomavirus (HPV) and genetic alterations are likely to play an important role in these lesions. The purpose of this study was to compare the efficacy of HC-II assay and PCR ...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-7-253

    authors: Chaudhary AK,Pandya S,Mehrotra R,Bharti AC,Singh M,Singh M

    更新日期:2010-09-23 00:00:00

  • Immunohistochemical insights into Saffold virus infection of the brain of juvenile AG129 mice.

    abstract:BACKGROUND:Saffold Virus (SAFV) is a human cardiovirus that is suspected of causing infection of the central nervous system (CNS) in children. While recent animal studies have started to elucidate the pathogenesis of SAFV, very little is known about the mechanisms behind it. METHOD:In this study, we attempted to eluci...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-016-0654-8

    authors: Tan SZ,Prabakaran M

    更新日期:2016-11-25 00:00:00

  • Molecular characterization of partial fusion gene and C-terminus extension length of haemagglutinin-neuraminidase gene of recently isolated Newcastle disease virus isolates in Malaysia.

    abstract:BACKGROUND:Newcastle disease (ND), caused by Newcastle disease virus (NDV), is a highly contagious disease of birds and has been one of the major causes of economic losses in the poultry industry. Despite routine vaccination programs, sporadic cases have occasionally occurred in the country and remain a constant threat...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-7-183

    authors: Berhanu A,Ideris A,Omar AR,Bejo MH

    更新日期:2010-08-08 00:00:00

  • Oligomerization of the human immunodeficiency virus type 1 (HIV-1) Vpu protein--a genetic, biochemical and biophysical analysis.

    abstract:BACKGROUND:The human immunodeficiency virus type 1(HIV-1) is a complex retrovirus and the causative agent of acquired immunodeficiency syndrome (AIDS). The HIV-1 Vpu protein is an oligomeric integral membrane protein essential for particle release, viral load and CD4 degradation. In silico models show Vpu to form penta...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-4-81

    authors: Hussain A,Das SR,Tanwar C,Jameel S

    更新日期:2007-08-29 00:00:00

  • Sequence characteristics of T4-like bacteriophage IME08 benome termini revealed by high throughput sequencing.

    abstract:BACKGROUND:T4 phage is a model species that has contributed broadly to our understanding of molecular biology. T4 DNA replication and packaging share various mechanisms with human double-stranded DNA viruses such as herpes virus. The literature indicates that T4-like phage genomes have permuted terminal sequences, and ...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-8-194

    authors: Jiang X,Jiang H,Li C,Wang S,Mi Z,An X,Chen J,Tong Y

    更新日期:2011-04-27 00:00:00

  • The role of cholesterol and sphingolipids in chemokine receptor function and HIV-1 envelope glycoprotein-mediated fusion.

    abstract:BACKGROUND:HIV-1 entry into cells is a multifaceted process involving target cell CD4 and the chemokine receptors, CXCR4 or CCR5. The lipid composition of the host cell plays a significant role in the HIV fusion process as it orchestrates the appropriate disposition of CD4 and co-receptors required for HIV-1 envelope g...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-3-104

    authors: Ablan S,Rawat SS,Viard M,Wang JM,Puri A,Blumenthal R

    更新日期:2006-12-22 00:00:00

  • Prime immunization with rotavirus VLP 2/6 followed by boosting with an adenovirus expressing VP6 induces protective immunization against rotavirus in mice.

    abstract:BACKGROUND:Rotavirus (RV) is the main cause of severe gastroenteritis in children. An effective vaccination regime against RV can substantially reduce morbidity and mortality. Previous studies have demonstrated the efficacy of virus-like particles formed by RV VP2 and VP6 (VLP2/6), as well as that of recombinant adenov...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-8-3

    authors: Zhou H,Guo L,Wang M,Qu J,Zhao Z,Wang J,Hung T

    更新日期:2011-01-05 00:00:00

  • Infection of human monocyte-derived dendritic cells by ANDES Hantavirus enhances pro-inflammatory state, the secretion of active MMP-9 and indirectly enhances endothelial permeability.

    abstract:BACKGROUND:Andes virus (ANDV), a rodent-borne Hantavirus, is the major etiological agent of Hantavirus cardiopulmonary syndrome (HCPS) in South America, which is mainly characterized by a vascular leakage with high rate of fatal outcomes for infected patients. Currently, neither specific therapy nor vaccines are availa...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-8-223

    authors: Marsac D,García S,Fournet A,Aguirre A,Pino K,Ferres M,Kalergis AM,Lopez-Lastra M,Veas F

    更新日期:2011-05-13 00:00:00

  • Porcine reproductive and respiratory syndrome virus nonstructural protein 2 contributes to NF-κB activation.

    abstract:BACKGROUND:Nuclear factor-kappaB (NF-κB) is an inducible transcription factor that plays a key role in inflammation and immune responses, as well as in the regulation of cell proliferation and survival. Previous studies by our group and others have demonstrated that porcine reproductive and respiratory syndrome virus (...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-9-83

    authors: Fang Y,Fang L,Wang Y,Lei Y,Luo R,Wang D,Chen H,Xiao S

    更新日期:2012-04-30 00:00:00

  • Characterization of a non-pathogenic H5N1 influenza virus isolated from a migratory duck flying from Siberia in Hokkaido, Japan, in October 2009.

    abstract:BACKGROUND:Infection with H5N1 highly pathogenic avian influenza viruses (HPAIVs) of domestic poultry and wild birds has spread to more than 60 countries in Eurasia and Africa. It is concerned that HPAIVs may be perpetuated in the lakes in Siberia where migratory water birds nest in summer. To monitor whether HPAIVs ci...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-8-65

    authors: Yamamoto N,Sakoda Y,Motoshima M,Yoshino F,Soda K,Okamatsu M,Kida H

    更新日期:2011-02-11 00:00:00

  • Antibodies against Lewis antigens inhibit the binding of human norovirus GII.4 virus-like particles to saliva but not to intestinal Caco-2 cells.

    abstract:BACKGROUND:Human noroviruses (NoVs) are the main cause of gastroenteritis worldwide. The most commonly detected NoV strains belong to the genetically diverse GII.4 genotype, with new pandemic variants emerging periodically. Despite extensive efforts, NoV investigation has been hampered by the lack of an effective in vi...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-016-0538-y

    authors: Carmona-Vicente N,Allen DJ,Rodríguez-Díaz J,Iturriza-Gómara M,Buesa J

    更新日期:2016-05-21 00:00:00

  • Prevalence and resistance mutations of non-B HIV-1 subtypes among immigrants in Southern Spain along the decade 2000-2010.

    abstract:BACKGROUND:Most of the non-B HIV-1 subtypes are predominant in Sub-Saharan Africa and India although they have been found worldwide. In the last decade, immigration from these areas has increased considerably in Spain. The objective of this study was to evaluate the prevalence of non-B subtypes circulating in a cohort ...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/1743-422X-8-416

    authors: de Felipe B,Pérez-Romero P,Abad-Fernández M,Fernandez-Cuenca F,Martinez-Fernandez FJ,Trastoy M,Mata Rdel C,López-Cortés LF,Leal M,Viciana P,Vallejo A

    更新日期:2011-08-26 00:00:00

  • The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites.

    abstract:BACKGROUND:The gut microbiome is closely associated with the health of the host; although the interaction between the bacterial microbiome and the whole virome has rarely been studied, it is likely of medical importance. Examination of the interactions between the gut bacterial microbiome and virome of rhesus monkey wo...

    journal_title:Virology journal

    pub_type: 杂志文章

    doi:10.1186/s12985-019-1211-z

    authors: Li H,Li H,Wang J,Guo L,Fan H,Zheng H,Yang Z,Huang X,Chu M,Yang F,He Z,Li N,Yang J,Wu Q,Shi H,Liu L

    更新日期:2019-08-19 00:00:00