Temporal Regulation of Distinct Internal Ribosome Entry Sites of the Dicistroviridae Cricket Paralysis Virus.

Abstract:

:Internal ribosome entry is a key mechanism for viral protein synthesis in a subset of RNA viruses. Cricket paralysis virus (CrPV), a member of Dicistroviridae, has a positive-sense single strand RNA genome that contains two internal ribosome entry sites (IRES), a 5'untranslated region (5'UTR) and intergenic region (IGR) IRES, that direct translation of open reading frames (ORF) encoding the viral non-structural and structural proteins, respectively. The regulation of and the significance of the CrPV IRESs during infection are not fully understood. In this study, using a series of biochemical assays including radioactive-pulse labelling, reporter RNA assays and ribosome profiling, we demonstrate that while 5'UTR IRES translational activity is constant throughout infection, IGR IRES translation is delayed and then stimulated two to three hours post infection. The delay in IGR IRES translation is not affected by inhibiting global translation prematurely via treatment with Pateamine A. Using a CrPV replicon that uncouples viral translation and replication, we show that the increase in IGR IRES translation is dependent on expression of non-structural proteins and is greatly stimulated when replication is active. Temporal regulation by distinct IRESs within the CrPV genome is an effective viral strategy to ensure optimal timing and expression of viral proteins to facilitate infection.

journal_name

Viruses

journal_title

Viruses

authors

Khong A,Bonderoff JM,Spriggs RV,Tammpere E,Kerr CH,Jackson TJ,Willis AE,Jan E

doi

10.3390/v8010025

subject

Has Abstract

pub_date

2016-01-19 00:00:00

issue

1

issn

1999-4915

pii

v8010025

journal_volume

8

pub_type

杂志文章
  • Diverse Morphology and Structural Features of Old and New World Hantaviruses.

    abstract::To further understanding of the structure and morphology of the Orthohantavirus, family Hantaviridae, we have employed cryo-electron microscopy (cryo-EM) for three New World hantaviruses: Andes (ANDV), Sin Nombre (SNV), and Black Creek Canal (BCCV). Building upon our prior cryo-EM and cryo-tomography study of the Old ...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11090862

    authors: Parvate A,Williams EP,Taylor MK,Chu YK,Lanman J,Saphire EO,Jonsson CB

    更新日期:2019-09-16 00:00:00

  • Small Animal Models of Respiratory Viral Infection Related to Asthma.

    abstract::Respiratory viral infections are strongly associated with asthma exacerbations. Rhinovirus is most frequently-detected pathogen; followed by respiratory syncytial virus; metapneumovirus; parainfluenza virus; enterovirus and coronavirus. In addition; viral infection; in combination with genetics; allergen exposure; mic...

    journal_title:Viruses

    pub_type: 杂志文章,评审

    doi:10.3390/v10120682

    authors: Han M,Rajput C,Ishikawa T,Jarman CR,Lee J,Hershenson MB

    更新日期:2018-12-01 00:00:00

  • Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses.

    abstract::Global climate change-induced warming of the Artic seas is predicted to shift the phytoplankton community towards dominance of smaller-sized species due to global warming. Yet, little is known about their viral mortality agents despite the ecological importance of viruses regulating phytoplankton host dynamics and div...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v9060134

    authors: Maat DS,Biggs T,Evans C,van Bleijswijk JDL,van der Wel NN,Dutilh BE,Brussaard CPD

    更新日期:2017-06-02 00:00:00

  • Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION.

    abstract::As countries with endemic canine rabies progress towards elimination by 2030, it will become necessary to employ techniques to help plan, monitor, and confirm canine rabies elimination. Sequencing can provide critical information to inform control and vaccination strategies by identifying genetically distinct virus va...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12111255

    authors: Gigante CM,Yale G,Condori RE,Costa NC,Long NV,Minh PQ,Chuong VD,Tho ND,Thanh NT,Thin NX,Hanh NTH,Wambura G,Ade F,Mito O,Chuchu V,Muturi M,Mwatondo A,Hampson K,Thumbi SM,Thomae BG,de Paz VH,Meneses S,Munyua P,

    更新日期:2020-11-04 00:00:00

  • Human Norovirus Histo-Blood Group Antigen (HBGA) Binding Sites Mediate the Virus Specific Interactions with Lettuce Carbohydrates.

    abstract::Lettuce is often implicated in human norovirus (HuNoV) foodborne outbreaks. We identified H-like histo-blood group antigens (HBGAs) on lettuce leaves as specific binding moieties for virus-like particles (VLPs) of HuNoV GII.4/HS194/2009 strain. The objective of this study was to determine whether HuNoV-lettuce binding...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11090833

    authors: Esseili MA,Gao X,Boley P,Hou Y,Saif LJ,Brewer-Jensen P,Lindesmith LC,Baric RS,Atmar RL,Wang Q

    更新日期:2019-09-08 00:00:00

  • Characterization of a Novel Megalocytivirus Isolated from European Chub (Squalius cephalus).

    abstract::A novel virus from moribund European chub (Squalius cephalus) was isolated on epithelioma papulosum cyprini (EPC) cells. Transmission electron microscopic examination revealed abundant non-enveloped, hexagonal virus particles in the cytoplasm of infected EPC cells consistent with an iridovirus. Illumina MiSeq sequence...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11050440

    authors: Halaly MA,Subramaniam K,Koda SA,Popov VL,Stone D,Way K,Waltzek TB

    更新日期:2019-05-15 00:00:00

  • Current Peptide and Protein Candidates Challenging HIV Therapy beyond the Vaccine Era.

    abstract::Human immunodeficiency virus (HIV) is a causative agent of acquired immune deficiency syndrome (AIDS). Highly active antiretroviral therapy (HAART) can slow down the replication of HIV-1, leading to an improvement in the survival of HIV-1-infected patients. However, drug toxicities and poor drug administration has led...

    journal_title:Viruses

    pub_type: 杂志文章,评审

    doi:10.3390/v9100281

    authors: Chupradit K,Moonmuang S,Nangola S,Kitidee K,Yasamut U,Mougel M,Tayapiwatana C

    更新日期:2017-09-29 00:00:00

  • Tomato Twisted Leaf Virus: A Novel Indigenous New World Monopartite Begomovirus Infecting Tomato in Venezuela.

    abstract::Begomoviruses are one of the major groups of plant viruses with an important economic impact on crop production in tropical and subtropical regions. The global spread of its polyphagous vector, the whitefly Bemisia tabaci, has contributed to the emergence and diversification of species within this genus. In this study...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11040327

    authors: Romay G,Geraud-Pouey F,Chirinos DT,Mahillon M,Gillis A,Mahillon J,Bragard C

    更新日期:2019-04-04 00:00:00

  • Origin and Spread of the Dengue Virus Type 1, Genotype V in Senegal, 2015-2019.

    abstract::Dengue virus (DENV) is the most widespread arthropod-borne virus, with the number and severity of outbreaks increasing worldwide in recent decades. Dengue is caused by genetically distinct serotypes, DENV-1-4. Here, we present data on DENV-1, isolated from patients with dengue fever during an outbreak in Senegal and M...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v13010057

    authors: Dieng I,Cunha M,Diagne MM,Sembène PM,Zanotto PMA,Faye O,Faye O,Sall AA

    更新日期:2021-01-04 00:00:00

  • Enhanced Ability of Oligomeric Nanobodies Targeting MERS Coronavirus Receptor-Binding Domain.

    abstract::Middle East respiratory syndrome (MERS) coronavirus (MERS-CoV), an infectious coronavirus first reported in 2012, has a mortality rate greater than 35%. Therapeutic antibodies are key tools for preventing and treating MERS-CoV infection, but to date no such agents have been approved for treatment of this virus. Nanobo...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11020166

    authors: He L,Tai W,Li J,Chen Y,Gao Y,Li J,Sun S,Zhou Y,Du L,Zhao G

    更新日期:2019-02-19 00:00:00

  • The Nuclear Pore Complex: A Target for NS3 Protease of Dengue and Zika Viruses.

    abstract::During flavivirus infection, some viral proteins move to the nucleus and cellular components are relocated from the nucleus to the cytoplasm. Thus, the integrity of the main regulator of the nuclear-cytoplasmic transport, the nuclear pore complex (NPC), was evaluated during infection with dengue virus (DENV) and Zika ...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12060583

    authors: De Jesús-González LA,Cervantes-Salazar M,Reyes-Ruiz JM,Osuna-Ramos JF,Farfán-Morales CN,Palacios-Rápalo SN,Pérez-Olais JH,Cordero-Rivera CD,Hurtado-Monzón AM,Ruíz-Jiménez F,Gutiérrez-Escolano AL,Del Ángel RM

    更新日期:2020-05-26 00:00:00

  • Updating the Quarantine Status of Prunus Infecting Viruses in Australia.

    abstract::One hundred Prunus trees, including almond (P. dulcis), apricot (P. armeniaca), nectarine (P. persica var. nucipersica), peach (P. persica), plum (P. domestica), purple leaf plum (P. cerasifera) and sweet cherry (P. avium), were selected from growing regions Australia-wide and tested for the presence of 34 viruses and...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12020246

    authors: Kinoti WM,Nancarrow N,Dann A,Rodoni BC,Constable FE

    更新日期:2020-02-23 00:00:00

  • Fatal Interstitial Pneumonia Associated with Bovine Coronavirus in Cows from Southern Italy.

    abstract::An outbreak of winter dysentery, complicated by severe respiratory syndrome, occurred in January 2020 in a high production dairy cow herd located in a hilly area of the Calabria region. Of the 52 animals belonging to the farm, 5 (9.6%) died with severe respiratory distress, death occurring 3-4 days after the appearanc...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12111331

    authors: Amoroso MG,Lucifora G,Degli Uberti B,Serra F,De Luca G,Borriello G,De Domenico A,Brandi S,Cuomo MC,Bove F,Riccardi MG,Galiero G,Fusco G

    更新日期:2020-11-19 00:00:00

  • Serosurveillance and Molecular Investigation of Wild Deer in Australia Reveals Seroprevalence of Pestivirus Infection.

    abstract::Since deer were introduced into Australia in the mid-1800s, their wild populations have increased in size and distribution, posing a potential risk to the livestock industry, through their role in pathogen transmission cycles. In comparison to livestock, there are limited data on viral infections in all wildlife, incl...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12070752

    authors: Huaman JL,Pacioni C,Forsyth DM,Pople A,Hampton JO,Carvalho TG,Helbig KJ

    更新日期:2020-07-13 00:00:00

  • Super-resolution microscopy: a virus' eye view of the cell.

    abstract::It is difficult to observe the molecular choreography between viruses and host cell components, as they exist on a spatial scale beyond the reach of conventional microscopy. However, novel super-resolution microscopy techniques have cast aside technical limitations to reveal a nanoscale view of virus replication and c...

    journal_title:Viruses

    pub_type: 杂志文章,评审

    doi:10.3390/v6031365

    authors: Grove J

    更新日期:2014-03-19 00:00:00

  • Prevalence of antibodies against hantaviruses in serum and saliva of adults living or working on farms in Yorkshire, United Kingdom.

    abstract::Hantaviruses are an established cause of haemorrhagic fever with renal syndrome (HFRS) in Europe. Following a confirmed case of HFRS in the UK, in an individual residing on a farm in North Yorkshire and the Humber, a tidal estuary on the east coast of Northern England, and the subsequent isolation of a Seoul hantaviru...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v6020524

    authors: Jameson LJ,Newton A,Coole L,Newman EN,Carroll MW,Beeching NJ,Hewson R,Christley RM

    更新日期:2014-02-05 00:00:00

  • Genetic Susceptibility to Human Norovirus Infection: An Update.

    abstract::Noroviruses are the most common etiological agent of acute gastroenteritis worldwide. Despite their high infectivity, a subpopulation of individuals is resistant to infection and disease. This susceptibility is norovirus genotype-dependent and is largely mediated by the presence or absence of human histo-blood group a...

    journal_title:Viruses

    pub_type: 杂志文章,评审

    doi:10.3390/v11030226

    authors: Nordgren J,Svensson L

    更新日期:2019-03-06 00:00:00

  • The Iminosugar UV-4 is a Broad Inhibitor of Influenza A and B Viruses ex Vivo and in Mice.

    abstract::Iminosugars that are competitive inhibitors of endoplasmic reticulum (ER) α-glucosidases have been demonstrated to have antiviral activity against a diverse set of viruses. A novel iminosugar, UV-4B, has recently been shown to provide protection against lethal infections with dengue and influenza A (H1N1) viruses in m...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v8030071

    authors: Warfield KL,Barnard DL,Enterlein SG,Smee DF,Khaliq M,Sampath A,Callahan MV,Ramstedt U,Day CW

    更新日期:2016-03-07 00:00:00

  • Identification of Novel Natural Products as Effective and Broad-Spectrum Anti-Zika Virus Inhibitors.

    abstract::Zika virus (ZIKV) infection during pregnancy leads to severe congenital Zika syndrome, which includes microcephaly and other neurological malformations. No therapeutic agents have, so far, been approved for the treatment of ZIKV infection in humans; as such, there is a need for a continuous effort to develop effective...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11111019

    authors: Gao Y,Tai W,Wang N,Li X,Jiang S,Debnath AK,Du L,Chen S

    更新日期:2019-11-02 00:00:00

  • Translation-Independent Roles of RNA Secondary Structures within the Replication Protein Coding Region of Turnip Crinkle Virus.

    abstract::RNA secondary structures play diverse roles in positive-sense (+) RNA virus infections, but those located with the replication protein coding sequence can be difficult to investigate. Structures that regulate the translation of replication proteins pose particular challenges, as their potential involvement in post-tra...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12030350

    authors: Sun R,Zhang S,Zheng L,Qu F

    更新日期:2020-03-22 00:00:00

  • 3D Analysis of HCMV Induced-Nuclear Membrane Structures by FIB/SEM Tomography: Insight into an Unprecedented Membrane Morphology.

    abstract::We show that focused ion beam/scanning electron microscopy (FIB/SEM) tomography is an excellent method to analyze the three-dimensional structure of a fibroblast nucleus infected with human cytomegalovirus (HCMV). We found that the previously described infoldings of the inner nuclear membrane, which are unique among i...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v7112900

    authors: Villinger C,Neusser G,Kranz C,Walther P,Mertens T

    更新日期:2015-11-04 00:00:00

  • Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France.

    abstract::Puumala virus (PUUV) is the agent of nephropathia epidemica (NE), a mild form of hemorrhagic fever with renal syndrome (HFRS) in Europe. NE incidence presents a high spatial variation throughout France, while the geographical distribution of the wild reservoir of PUUV, the bank vole, is rather continuous. A missing pi...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v7102884

    authors: Castel G,Couteaudier M,Sauvage F,Pons JB,Murri S,Plyusnina A,Pontier D,Cosson JF,Plyusnin A,Marianneau P,Tordo N

    更新日期:2015-10-22 00:00:00

  • Glycoprotein YKL-40 Is Elevated and Predicts Disease Severity in Puumala Hantavirus Infection.

    abstract::Most cases of hemorrhagic fever with renal syndrome (HFRS) in Europe are caused by the Puumala hantavirus (PUUV). Typical features of the disease are increased vascular permeability, acute kidney injury (AKI), and thrombocytopenia. YKL-40 is an inflammatory glycoprotein involved in various forms of acute and chronic i...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11090767

    authors: Outinen TK,Mantula P,Jaatinen P,Hämäläinen M,Moilanen E,Vaheri A,Huhtala H,Mäkelä S,Mustonen J

    更新日期:2019-08-21 00:00:00

  • In Vitro Evolution of Bovine Foamy Virus Variants with Enhanced Cell-Free Virus Titers and Transmission.

    abstract::Virus transmission is essential for spreading viral infections and is a highly coordinated process which occurs by cell-free transmission or cell-cell contact. The transmission of Bovine Foamy Virus (BFV) is highly cell-associated, with undetectable cell-free transmission. However, BFV particle budding can be induced ...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v7112907

    authors: Bao Q,Hipp M,Hugo A,Lei J,Liu Y,Kehl T,Hechler T,Löchelt M

    更新日期:2015-11-11 00:00:00

  • A Novel and Divergent Gyrovirus with Unusual Genomic Features Detected in Wild Passerine Birds from a Remote Rainforest in French Guiana.

    abstract::Sequence-independent amplification techniques have become important tools for virus discovery, metagenomics, and exploration of viral diversity at the global scale, especially in remote areas. Here, we describe the detection and genetic characterization of a novel gyrovirus, named GyV11, present in cloacal, oral, and ...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v11121148

    authors: Truchado DA,Diaz-Piqueras JM,Gomez-Lucia E,Doménech A,Milá B,Pérez-Tris J,Schmidt-Chanasit J,Cadar D,Benítez L

    更新日期:2019-12-11 00:00:00

  • Serological Survey of Lyssaviruses in Polish Bats in the Frame of Passive Rabies Surveillance Using an Enzyme-Linked Immunosorbent Assay.

    abstract::Background: Bats are known to host a number of nonpathogenic viruses, as well as highly pathogenic viruses causing fatal diseases like rabies. Serological surveys as part of active and passive bat rabies surveillance mainly use seroneutralization assays, demonstrating the presence of lyssavirus-specific antibodies in ...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v12030271

    authors: Orłowska A,Smreczak M,Freuling CM,Müller T,Trębas P,Rola J

    更新日期:2020-02-28 00:00:00

  • Characterizing Phage Genomes for Therapeutic Applications.

    abstract::Multi-drug resistance is increasing at alarming rates. The efficacy of phage therapy, treating bacterial infections with bacteriophages alone or in combination with traditional antibiotics, has been demonstrated in emergency cases in the United States and in other countries, however remains to be approved for wide-spr...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v10040188

    authors: Philipson CW,Voegtly LJ,Lueder MR,Long KA,Rice GK,Frey KG,Biswas B,Cer RZ,Hamilton T,Bishop-Lilly KA

    更新日期:2018-04-10 00:00:00

  • New Markers in Monitoring the Reactivation of Hepatitis B Virus Infection in Immunocompromised Hosts.

    abstract::Hepatitis B virus (HBV) persistence is at the basis of HBV reactivation as a consequence of chemotherapy and immunosuppressive treatments. The identification of early viral replication indicators and markers of effective HBV immunological control would be useful in monitoring patients who are at risk of potential vira...

    journal_title:Viruses

    pub_type: 杂志文章,评审

    doi:10.3390/v11090783

    authors: Svicher V,Salpini R,Malagnino V,Piermatteo L,Alkhatib M,Cerva C,Sarmati L

    更新日期:2019-08-25 00:00:00

  • The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic.

    abstract::Phylodynamic inference is a pivotal tool in understanding transmission dynamics of viral outbreaks. These analyses are strongly guided by the input of an epidemiological model as well as sequence data that must contain sufficient intersequence variability in order to be informative. These criteria, however, may not be...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v13010079

    authors: Lam A,Duchene S

    更新日期:2021-01-08 00:00:00

  • Biomarkers of Progression after HIV Acute/Early Infection: Nothing Compares to CD4⁺ T-cell Count?

    abstract::Progression of HIV infection is variable among individuals, and definition disease progression biomarkers is still needed. Here, we aimed to categorize the predictive potential of several variables using feature selection methods and decision trees. A total of seventy-five treatment-naïve subjects were enrolled during...

    journal_title:Viruses

    pub_type: 杂志文章

    doi:10.3390/v10010034

    authors: Turk G,Ghiglione Y,Hormanstorfer M,Laufer N,Coloccini R,Salido J,Trifone C,Ruiz MJ,Falivene J,Holgado MP,Caruso MP,Figueroa MI,Salomón H,Giavedoni LD,Pando MLÁ,Gherardi MM,Rabinovich RD,Pury PA,Sued O

    更新日期:2018-01-13 00:00:00