Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from Botswana.

Abstract:

:To better understand the virological aspect of the expanding AIDS epidemic in southern Africa, a set of 23 near-full-length clones of human immunodeficiency virus type 1 (HIV-1) representing eight AIDS patients from Botswana were sequenced and analyzed phylogenetically. All study viruses from Botswana belonged to HIV-1 subtype C. The interpatient diversity of the clones from Botswana was higher than among full-length isolates of subtype B or among a set of full-length HIV-1 genomes of subtype C from India (mean value of 9. 1% versus 6.5 and 4.3%, respectively; P < 0.0001 for both comparisons). Similar results were observed in all genes across the entire viral genome. We suggest that the high level of HIV-1 diversity might be a typical feature of the subtype C epidemic in southern Africa. The reason or reasons for this diversity are unclear, but may include an altered replication efficiency of HIV-1 subtype C and/or the multiple introduction of different subtype C viruses.

journal_name

J Virol

journal_title

Journal of virology

authors

Novitsky VA,Montano MA,McLane MF,Renjifo B,Vannberg F,Foley BT,Ndung'u TP,Rahman M,Makhema MJ,Marlink R,Essex M

doi

10.1128/JVI.73.5.4427-4432.1999

subject

Has Abstract

pub_date

1999-05-01 00:00:00

pages

4427-32

issue

5

eissn

0022-538X

issn

1098-5514

journal_volume

73

pub_type

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