Glutathione reductase turned into trypanothione reductase: structural analysis of an engineered change in substrate specificity.

Abstract:

:Trypanosoma and Leishmania, pathogens responsible for diseases such as African sleeping sickness, Chagas' heart disease, or Oriental sore, are two of the very few genera that do not use the ubiquitous glutathione/glutathione reductase system to keep a stable cellular redox balance. Instead, they rely on trypanothione and trypanothione reductase to protect them from oxidative stress. Trypanothione reductase (TR) and the corresponding host enzyme, human red blood cell glutathione reductase (GR), belong to the same flavoprotein family. Despite their closely related three-dimensional structures and although their natural substrates share the common structural glutathione core, the two enzymes are mutually exclusive with respect to their disulfide substrates. This makes the parasite enzyme a potential target for antitrypanosomal drug design. While a large body of structural data on GR complexes is available, information on TR-ligand interactions is very limited. When the two amino acid changes Ala34Glu and Arg37Trp are introduced into human GR, the resulting mutant enzyme (GRTR) prefers trypanothione 700-fold over its original substrate, effectively converting a GR into a TR [Bradley, M., Bücheler, U. S., & Walsh, C. T. (1991) Biochemistry 30, 6124-6127]. The crystal structure of GRTR has been determined at 2.3 A resolution and refined to a crystallographic R factor of 20.9%. We have taken advantage of the ease with which ligand complexes can be produced in GR crystals, a property that extends to the isomorphous GRTR crystals, and have produced and analyzed crystals of GRTR complexes with glutathione, trypanothione, glutathionylspermidine and of a true catalytic intermediate, the mixed disulfide between trypanothione and the enzyme. The corresponding molecular structures have been characterized at resolutions between 2.3 and 2.8 A with R factors ranging from 17.1 to 19.7%. The results indicate that the Ala34Glu mutation causes steric hindrance leading to a large displacement of the side chain of Arg347. This movement combined with the change in charge introduced by the mutations modifies the binding cavity, forcing glutathione to adopt a nonproductive binding mode and permitting trypanothione and to a certain degree also the weak substrate glutathionylspermidine to assume a productive mode.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Stoll VS,Simpson SJ,Krauth-Siegel RL,Walsh CT,Pai EF

doi

10.1021/bi963074p

subject

Has Abstract

pub_date

1997-05-27 00:00:00

pages

6437-47

issue

21

eissn

0006-2960

issn

1520-4995

pii

bi963074p

journal_volume

36

pub_type

杂志文章
  • Hypertrophic cardiomyopathy-linked mutation D145E drastically alters calcium binding by the C-domain of cardiac troponin C.

    abstract::The role of the C-domain sites of cardiac troponin C in the modulation of the calcium signal remains unclear. In this study, we investigated the effects of hypertrophic cardiomyopathy-linked mutations A8V, E134D, and D145E in cardiac troponin C on the properties of the C-domain sites. The A8V mutation had essentially ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100400h

    authors: Swindle N,Tikunova SB

    更新日期:2010-06-15 00:00:00

  • Kinetics and fidelity of polymerization by DNA polymerase III from Sulfolobus solfataricus.

    abstract::We have biochemically and kinetically characterized the polymerase and exonuclease activities of the third B-family polymerase (Dpo3) from the hyperthermophilic Crenarchaeon, Sulfolobus solfataricus (Sso). We have established through mutagenesis that despite incomplete sequence conservation, the polymerase and exonucl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201799a

    authors: Bauer RJ,Begley MT,Trakselis MA

    更新日期:2012-03-06 00:00:00

  • Crystal structure of arginase from Plasmodium falciparum and implications for L-arginine depletion in malarial infection .

    abstract::The 2.15 A resolution crystal structure of arginase from Plasmodium falciparum, the parasite that causes cerebral malaria, is reported in complex with the boronic acid inhibitor 2(S)-amino-6-boronohexanoic acid (ABH) (K(d) = 11 microM). This is the first crystal structure of a parasitic arginase. Various protein const...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100390z

    authors: Dowling DP,Ilies M,Olszewski KL,Portugal S,Mota MM,Llinás M,Christianson DW

    更新日期:2010-07-06 00:00:00

  • Kinetic behavior of porcine pancreatic phospholipase A2 on zwitterionic and negatively charged double-chain substrates.

    abstract::A number of isomeric diacylglycerophosphocholines and diacylglycero sulfates containing O-acyl and/or S-acyl ester bonds were investigated as substrates for porcine pancreatic phospholipase A2 and its zymogen. A comparison is made with the kinetic properties of the enzyme toward the corresponding glycol detergents pre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00348a023

    authors: van Oort MG,Dijkman R,Hille JD,de Haas GH

    更新日期:1985-12-31 00:00:00

  • Extended X-ray absorption fine structure of copper in CuA-depleted, p-(hydroxymercuri)benzoate-modified, and native cytochrome c oxidase.

    abstract::Cytochrome c oxidase contains four redox-active metal centers: two heme irons, cytochromes a and a3, and two copper ions, CuA and CuB. Due to the paucity of spectroscopic signatures for both copper sites in cytochrome c oxidase, the ligands and structures for these sites have remained ambiguous. The specific depletion...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00382a005

    authors: Li PM,Gelles J,Chan SI,Sullivan RJ,Scott RA

    更新日期:1987-04-21 00:00:00

  • Importance of residues Arg-167 and Gln-231 in both the allosteric and catalytic mechanisms of Escherichia coli aspartate transcarbamoylase.

    abstract::Site-specific mutagenesis has been used to create two mutant versions of aspartate transcarbamoylase. Arg-167 and Gln-231, both previously identified as interacting with the portion of the bisubstrate analogue N-(phosphonoacetyl)-L-aspartate (PALA) that corresponds to aspartate [Krause, K. L., Voltz, K. W., & Lipscomb...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00468a003

    authors: Stebbins JW,Zhang Y,Kantrowitz ER

    更新日期:1990-04-24 00:00:00

  • Mechanistic studies on the bovine liver mitochondrial dihydroorotate dehydrogenase using kinetic deuterium isotope effects.

    abstract::Dihydroorotates deuteriated at both C5 and C6 have been prepared and used to probe the mechanism of the bovine liver mitochondrial dihydroorotate dehydrogenase. Primary deuterium isotope effects on kcat are observed with both (6RS)-[5(S)-2H]- and (6RS)-[6-2H] dihydroorotates (3 and 6, respectively); these effects are ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00429a041

    authors: Hines V,Johnston M

    更新日期:1989-02-07 00:00:00

  • Functional epitopes for site 1 of human prolactin.

    abstract::Human prolactin (hPRL) binds two human prolactin receptor molecules, creating active heterotrimeric complexes. Receptors bind dissimilar hormone surfaces termed site 1 and site 2 in an obligate ordered process. We sought to map the functional epitopes in site 1 of hPRL. Extensive alanine mutagenesis (102 of the 199 re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101838s

    authors: Rao GV,Brooks CL

    更新日期:2011-03-01 00:00:00

  • Time-resolved resonance Raman and time-resolved step-scan FTIR studies of nitric oxide reductase from Paracoccus denitrificans: comparison of the heme b3-FeB site to that of the heme-CuB in oxidases.

    abstract::Time-resolved resonance Raman (TR(3)) and time-resolved step-scan (TRS(2)) FTIR spectroscopies have been used to probe the structural dynamics at the heme b(3) proximal and distal sites after carbon monoxide photolysis from fully reduced CO-bound nitric oxide reductase. The Raman spectra of the transient species exhib...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035289m

    authors: Pinakoulaki E,Varotsis C

    更新日期:2003-12-23 00:00:00

  • Ligand stabilization of the beta 2 adrenergic receptor: effect of DTT on receptor conformation monitored by circular dichroism and fluorescence spectroscopy.

    abstract::Treatment of the beta 2 adrenergic receptor with the reducing agent dithiothreitol (DTT) is known to abolish ligand binding to the receptor. Interestingly, the loss of binding can be prevented by preoccupation of the receptor with ligand. It is unclear, however, whether the ligand blocks access of DTT to the receptor,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961619+

    authors: Lin S,Gether U,Kobilka BK

    更新日期:1996-11-19 00:00:00

  • Mechanism of action of thrombin on fibrinogen. Kinetic evidence for involvement of aspartic acid at position P10.

    abstract::The following peptide was synthesized by classical methods in solution: Ac-Asp-Phe-Leu-Ala-Glu-Gly-Gly-Gly-Val-Arg-Gly-Pro-Arg-Val-NHCH3 (F-8). The Michaelis-Menten parameters for the hydrolysis of the Arg-Gly bond in F-8 by thrombin were determined to be Kcat = 31 X 10(-11) M [(NIH unit/L) s]-1 and KM = 310 X 10(-6) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00287a002

    authors: Marsh HC Jr,Meinwald YC,Thannhauser TW,Scheraga HA

    更新日期:1983-08-30 00:00:00

  • Enthalpic and entropic effects of salt and polyol osmolytes on site-specific protein-DNA association: the integrase Tn916-DNA complex.

    abstract::The effect of low molecular-weight compounds on the equilibrium constant K(A) can be used to explore the energetics and molecular mechanism of protein-DNA interactions. Here we use the complex composed of the integrase Tn916 DNA-binding domain and its target DNA duplex to investigate the effects of salt and the nonion...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048907n

    authors: Milev S,Bosshard HR,Jelesarov I

    更新日期:2005-01-11 00:00:00

  • Hepatitis C virus NS3 and simian virus 40 T antigen helicases displace streptavidin from 5'-biotinylated oligonucleotides but not from 3'-biotinylated oligonucleotides: evidence for directional bias in translocation on single-stranded DNA.

    abstract::Helicases are enzymes that use energy from nucleoside triphosphate hydrolysis to unwind double-stranded (ds) DNA, a process vital to virtually every phase of DNA metabolism. Helicases have been classified as either 5'-to-3' or 3'-to-5' on the basis of their ability to unwind duplex DNA adjacent to either a 5' or 3' si...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012058b

    authors: Morris PD,Byrd AK,Tackett AJ,Cameron CE,Tanega P,Ott R,Fanning E,Raney KD

    更新日期:2002-02-19 00:00:00

  • Structure of cyclodextrin glycosyltransferase complexed with a maltononaose inhibitor at 2.6 angstrom resolution. Implications for product specificity.

    abstract::Crystals of the Y195F mutant of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 were subjected to a double soaking procedure, in which they were first soaked in a solution containing the inhibitor acarbose and subsequently in a solution containing maltohexaose. The refined structure of the resultin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952339h

    authors: Strokopytov B,Knegtel RM,Penninga D,Rozeboom HJ,Kalk KH,Dijkhuizen L,Dijkstra BW

    更新日期:1996-04-02 00:00:00

  • Peptidylglycine alpha-hydroxylating monooxygenase: active site residues, disulfide linkages, and a two-domain model of the catalytic core.

    abstract::Peptidylglycine alpha-hydroxylating monooxygenase (PHM) is a copper, ascorbate, and molecular oxygen dependent enzyme that catalyzes the first step leading to the C-terminal amidation of glycine-extended peptides. The catalytic core of PHM (PHMcc), refined to residues 42-356 of the PHM protein, was expressed at high l...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9708747

    authors: Kolhekar AS,Keutmann HT,Mains RE,Quon AS,Eipper BA

    更新日期:1997-09-09 00:00:00

  • Substrate-Induced Facilitated Dissociation of the Competitive Inhibitor from the Active Site of O-Acetyl Serine Sulfhydrylase Reveals a Competitive-Allostery Mechanism.

    abstract::By classical competitive antagonism, a substrate and competitive inhibitor must bind mutually exclusively to the active site. The competitive inhibition of O-acetyl serine sulfhydrylase (OASS) by the C-terminus of serine acetyltransferase (SAT) presents a paradox, because the C-terminus of SAT binds to the active site...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00500

    authors: Singh AK,Ekka MK,Kaushik A,Pandya V,Singh RP,Banerjee S,Mittal M,Singh V,Kumaran S

    更新日期:2017-09-19 00:00:00

  • Protein S-glutathiolation triggered by decomposed S-nitrosoglutathione.

    abstract::Recombinant human brain calbindin D(28K) (rHCaBP), human Cu,Zn-superoxide dismutase (HCuZnSOD), rabbit muscle glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and bovine serum albumin (BSA) were found to be S-glutathiolated in decomposed S-nitrosoglutathione (GSNO) solutions. Tryptic or Glu-C digestion and MALDI-TOF ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035924o

    authors: Tao L,English AM

    更新日期:2004-04-06 00:00:00

  • Dynamics of activation of lecithin:cholesterol acyltransferase by apolipoprotein A-I.

    abstract::The product of transesterification of phospholipid acyl chains and unesterified cholesterol (UC) by the enzyme lecithin:cholesterol acyltransferase (LCAT) is cholesteryl ester (CE). Activation of LCAT by apolipoprotein (apo) A-I on nascent (discoidal) high-density lipoproteins (HDL) is essential for formation of matur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901242k

    authors: Jones MK,Catte A,Li L,Segrest JP

    更新日期:2009-12-01 00:00:00

  • Energy coupling in Escherichia coli DNA gyrase: the relationship between nucleotide binding, strand passage, and DNA supercoiling.

    abstract::Binding of the nonhydrolyzable ATP analogue 5'-adenylyl-beta, gamma-imidodiphosphate (ADPNP) to Escherichia coli DNA gyrase can lead to a limited noncatalytic supercoiling of DNA. Here we examine the efficiency of coupling between ADPNP binding and the change in linking number either of positively or negatively superc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952433y

    authors: Bates AD,O'Dea MH,Gellert M

    更新日期:1996-02-06 00:00:00

  • Physical dissection of the structural elements responsible for regulatory properties and intersubunit interactions of protein kinase CK2 beta-subunit.

    abstract::The noncatalytic beta-subunit of protein kinase CK2 has been shown to display various and in some respects antagonistic effects on the catalytic alpha-subunit [Boldyreff et al. (1993) Biochemistry 32, 12672-12677; Meggio et al. (1994) Biochemistry 33, 4336-4342]. We have now examined the ability of peptides encompassi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962885q

    authors: Marin O,Meggio F,Sarno S,Pinna LA

    更新日期:1997-06-10 00:00:00

  • Specific effects of chloride on the photocycle of E194Q and E204Q mutants of bacteriorhodopsin as measured by FTIR spectroscopy.

    abstract::Low-temperature Fourier transform infrared spectroscopy has been used to study mutants of Glu194 and Glu204, two amino acids that are involved in proton release to the extracellular side of bacteriorhodopsin. Difference spectra of films of E194Q, E204Q, E194Q/E204Q, E9Q/E194Q/E204Q, and E9Q/E74Q/E194Q/E204Q at 243, 27...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025654u

    authors: Lazarova T,Sanz C,Sepulcre F,Querol E,Padrós E

    更新日期:2002-06-25 00:00:00

  • Identification of effector binding sites on S100 beta: studies with guanylate cyclase and p80, a retinal phosphoprotein.

    abstract::S100 beta is a calcium-binding protein, which regulates the activities of several enzymes and inhibits the phosphorylation of a variety of protein kinase C substrates in a calcium-dependent manner. The protein was recently found to activate a retinal membrane guanylate cyclase, and in this paper, we report that it inh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9802115

    authors: Pozdnyakov N,Margulis A,Sitaramayya A

    更新日期:1998-07-28 00:00:00

  • Unstructured RNA is a substrate for tRNase Z.

    abstract::tRNase Z, which exists in almost all cells, is believed to be working primarily for tRNA 3' maturation. In Escherichia coli, however, the tRNase Z gene appears to be dispensable under normal growth conditions, and its physiological role is not clear. Here, to investigate a possibility that E. coli tRNase Z cleaves RNA...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051972s

    authors: Shibata HS,Minagawa A,Takaku H,Takagi M,Nashimoto M

    更新日期:2006-05-02 00:00:00

  • Calcium ion dependent covalent modification of calmodulin with norchlorpromazine isothiocyanate.

    abstract::Calmodulin forms a covalent, one to one, complex with 3H-labeled norchlorpromazine isothiocyanate. Complex formation was monitored by high-performance liquid chromatography using a CN reverse-phase column which resolves calmodulin, the calmodulin-norchlorpromazine adduct, and norchlorpromazine isothiocyanate. Formatio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00293a003

    authors: Newton DL,Burke TR Jr,Rice KC,Klee CB

    更新日期:1983-11-22 00:00:00

  • Spin-label and fluorescence labeling studies of the thioester bonds in human alpha 2-macroglobulin.

    abstract::Upon cleavage of the reactive thioester bonds (Cys-949-Glx-952) of tetrameric human alpha 2-macroglobulin (alpha 2M) by methylamine, one sulfhydryl group per alpha 2M subunit is exposed. These identical sulfhydryl group sites were labeled with the thiol-specific nitroxide spin-labels (1-oxy-2,2,5,5-tetramethyl-3-pyrro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00414a053

    authors: Zhao BL,Musci G,Sugawara Y,Berliner LJ

    更新日期:1988-07-12 00:00:00

  • Isotopic probes of the argininosuccinate lyase reaction.

    abstract::The mechanism of the argininosuccinate lyase reaction has been probed by the measurement of the effects of isotopic substitution at the reaction centers. A primary deuterium isotope effect of 1.0 on both V and V/K is obtained with (2S,3R)-argininosuccinate-3-d, while a primary 15N isotope effect on V/K of 0.9964 +/- 0...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00365a004

    authors: Kim SC,Raushel FM

    更新日期:1986-08-26 00:00:00

  • The substrate binding site of human liver cytochrome P450 2C9: an approach using designed tienilic acid derivatives and molecular modeling.

    abstract::Biochemical experiments, using the well-defined human liver CYP2C9 expressed in yeast, and molecular modeling techniques were used to derive a predictive model for substrates of CYP2C9. The ability of 10 2-aroylthiophenes related to tienilic acid to act as substrates for CYP2C9 was studied. Four of them were original ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00033a007

    authors: Mancy A,Broto P,Dijols S,Dansette PM,Mansuy D

    更新日期:1995-08-22 00:00:00

  • Isolation and characterization of a dog serum lipoprotein having apolipoprotein A-I as its predominant protein constituent.

    abstract::The serum high density lipoproteins (HDL) of normolipemic dogs (beagles) were isolated in the density range of p 1.063 to 1.21 g/ml, and characterized in terms of composition and physical properties (flotation and diffusion coefficients, partial specific volume, molecular weight, electrophoretic mobility, ultraviolet ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00654a022

    authors: Edelstein C,Lewis LL,Shainoff JR,Naito H,Scanu AM

    更新日期:1976-05-04 00:00:00

  • Two-stage maturation process for newly replicated chromatin.

    abstract::HTC cells have been labeled by short exposures to [3H]thymidine in order to identify newly synthesized DNA. By either isolating nuclei directly or isolating them after an extensive fixation with formaldehyde, we have been able to identify two phases in the maturation process of newly replicated chromatin. The first ph...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00302a036

    authors: Smith PA,Jackson V,Chalkley R

    更新日期:1984-03-27 00:00:00

  • HIV-1 gp41 transmembrane domain interacts with the fusion peptide: implication in lipid mixing and inhibition of virus-cell fusion.

    abstract::Fusion of the human immunodeficiency virus (HIV) with target cells is mediated by the gp41 subunit of the envelope protein. Mutation and deletion studies within the transmembrane domain (TMD) of intact gp41 influenced its fusion activity. In addition, current models suggest that the TMD is in proximity with the fusion...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201721r

    authors: Reuven EM,Dadon Y,Viard M,Manukovsky N,Blumenthal R,Shai Y

    更新日期:2012-04-03 00:00:00