RNA replication from the simian virus 5 antigenomic promoter requires three sequence-dependent elements separated by sequence-independent spacer regions.

Abstract:

:We have previously shown for the paramyxovirus simian virus 5 (SV5) that a functional promoter for RNA replication requires proper spacing between two discontinuous elements: a 19-base segment at the 3' terminus (conserved region I [CRI]) and an 18-base internal region (CRII) that is contained within the coding region of the L protein gene. In the work described here, we have used a reverse-genetics system to determine if the 53-base segment between CRI and CRII contains additional sequence-specific signals required for optimal replication or if this segment functions solely as a sequence-independent spacer region. A series of copyback defective interfering minigenome analogs were constructed to contain substitutions of nonviral sequences in place of bases 21 to 72 of the antigenomic promoter, and the relative level of RNA replication was measured by Northern blot analysis. The results from our mutational analysis indicate that in addition to CRI and CRII, optimal replication from the SV5 antigenomic promoter requires a third sequence-dependent element located 51 to 66 bases from the 3' end of the RNA. Minigenome RNA replication was not affected by changes in the either the position of this element in relation to CRI and CRII or the predicted hexamer phase of NP encapsidation. Thus, optimal RNA replication from the SV5 antigenomic promoter requires three sequence-dependent elements, CRI, CRII and bases 51 to 66.

journal_name

J Virol

journal_title

Journal of virology

authors

Keller MA,Murphy SK,Parks GD

doi

10.1128/JVI.75.8.3993-3998.2001

subject

Has Abstract

pub_date

2001-04-01 00:00:00

pages

3993-8

issue

8

eissn

0022-538X

issn

1098-5514

journal_volume

75

pub_type

杂志文章
  • rgs-CaM Detects and Counteracts Viral RNA Silencing Suppressors in Plant Immune Priming.

    abstract::Primary infection of a plant with a pathogen that causes high accumulation of salicylic acid in the plant typically via a hypersensitive response confers enhanced resistance against secondary infection with a broad spectrum of pathogens, including viruses. This phenomenon is called systemic acquired resistance (SAR), ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00761-17

    authors: Jeon EJ,Tadamura K,Murakami T,Inaba JI,Kim BM,Sato M,Atsumi G,Kuchitsu K,Masuta C,Nakahara KS

    更新日期:2017-09-12 00:00:00

  • Reversal of human cytomegalovirus major immediate-early enhancer/promoter silencing in quiescently infected cells via the cyclic AMP signaling pathway.

    abstract::The human cytomegalovirus (HCMV) major immediate-early (MIE) enhancer contains five functional cyclic AMP (cAMP) response elements (CRE). Because the CRE in their native context do not contribute appreciably to MIE enhancer/promoter activity in lytically infected human fibroblasts and NTera2 (NT2)-derived neurons, we ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01524-06

    authors: Keller MJ,Wu AW,Andrews JI,McGonagill PW,Tibesar EE,Meier JL

    更新日期:2007-06-01 00:00:00

  • High-molecular-weight DNA and the sedimentation coefficient: a new perspective based on DNA from T7 bacteriophage and two novel forms of T4 bacteriophage.

    abstract::The DNA molecules from T7 bacteriophage and a recently obtained mutant form of T4D were studied. The DNA of this T4 mutant contains cytosine in place of all of the glucosylated hydroxymethylcytosines normally present in T4. Molecular weights were measured with an electron microscope technique, and sedimentation coeffi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.33.1.438-448.1980

    authors: Clark RW,Wever GH,Wiberg JS

    更新日期:1980-01-01 00:00:00

  • Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses.

    abstract::The complete genome sequences of two Sulfolobus spindle-shaped viruses (SSVs) from acidic hot springs in Kamchatka (Russia) and Yellowstone National Park (United States) have been determined. These nonlytic temperate viruses were isolated from hyperthermophilic Sulfolobus hosts, and both viruses share the spindle-shap...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.78.4.1954-1961.2004

    authors: Wiedenheft B,Stedman K,Roberto F,Willits D,Gleske AK,Zoeller L,Snyder J,Douglas T,Young M

    更新日期:2004-02-01 00:00:00

  • Matrix proteins of Nipah and Hendra viruses interact with beta subunits of AP-3 complexes.

    abstract:UNLABELLED:Paramyxoviruses and other negative-strand RNA viruses encode matrix proteins that coordinate the virus assembly process. The matrix proteins link the viral glycoproteins and the viral ribonucleoproteins at virus assembly sites and often recruit host machinery that facilitates the budding process. Using a co-...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02103-14

    authors: Sun W,McCrory TS,Khaw WY,Petzing S,Myers T,Schmitt AP

    更新日期:2014-11-01 00:00:00

  • Differential divalent cation requirements uncouple the assembly and catalytic reactions of human immunodeficiency virus type 1 integrase.

    abstract::Previous in vitro analyses have shown that the human immunodeficiency virus type 1 (HIV-1) integrase uses either manganese or magnesium to assemble as a stable complex on the donor substrate and to catalyze strand transfer. We now demonstrate that subsequent to assembly, catalysis of both 3' end processing and strand ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.9.7005-7011.1997

    authors: Hazuda DJ,Felock PJ,Hastings JC,Pramanik B,Wolfe AL

    更新日期:1997-09-01 00:00:00

  • Uncovering the Repertoire of Endogenous Flaviviral Elements in Aedes Mosquito Genomes.

    abstract::Endogenous viral elements derived from nonretroviral RNA viruses have been described in various animal genomes. Whether they have a biological function, such as host immune protection against related viruses, is a field of intense study. Here, we investigated the repertoire of endogenous flaviviral elements (EFVEs) in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00571-17

    authors: Suzuki Y,Frangeul L,Dickson LB,Blanc H,Verdier Y,Vinh J,Lambrechts L,Saleh MC

    更新日期:2017-07-12 00:00:00

  • Enterocyte proliferation and intestinal hyperplasia induced by simian virus 40 T antigen require a functional J domain.

    abstract::Transgenic mice expressing the simian virus 40 large T antigen (TAg) in enterocytes develop intestinal hyperplasia that progresses to dysplasia with age. This induction requires TAg action on the retinoblastoma (Rb) family of tumor suppressors and is independent of the p53 pathway. In cell culture systems, the inactiv...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00922-07

    authors: Rathi AV,Sáenz Robles MT,Pipas JM

    更新日期:2007-09-01 00:00:00

  • The repressing and enhancing functions of the herpes simplex virus regulatory protein ICP27 map to C-terminal regions and are required to modulate viral gene expression very early in infection.

    abstract::The phenotypic properties of ICP27 temperature-sensitive and deletion mutants and the results of transient expression assays have demonstrated that ICP27 has a modulatory effect on viral gene expression induced by ICPs 0 and 4. In order to identify the regions of the ICP27 molecule that are responsible for its enhanci...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.7.3471-3485.1990

    authors: McMahan L,Schaffer PA

    更新日期:1990-07-01 00:00:00

  • West Nile Virus Infection Blocks Inflammatory Response and T Cell Costimulatory Capacity of Human Monocyte-Derived Dendritic Cells.

    abstract::West Nile virus (WNV) is a neurotropic flavivirus and the leading cause of mosquito-borne encephalitis in the United States. Recent studies in humans have found that dysfunctional T cell responses strongly correlate with development of severe WNV neuroinvasive disease. However, the contributions of human dendritic cel...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00664-19

    authors: Zimmerman MG,Bowen JR,McDonald CE,Pulendran B,Suthar MS

    更新日期:2019-11-13 00:00:00

  • Feline coronavirus type II strains 79-1683 and 79-1146 originate from a double recombination between feline coronavirus type I and canine coronavirus.

    abstract::Recent evidence suggests that the type II feline coronavirus (FCoV) strains 79-1146 and 79-1683 have arisen from a homologous RNA recombination event between FCoV type I and canine coronavirus (CCV). In both cases, the template switch apparently took place between the S and M genes, giving rise to recombinant viruses ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.5.4508-4514.1998

    authors: Herrewegh AA,Smeenk I,Horzinek MC,Rottier PJ,de Groot RJ

    更新日期:1998-05-01 00:00:00

  • Promoter-specific transactivation of hepatitis B virus transcription by a glutamine- and proline-rich domain of hepatocyte nuclear factor 1.

    abstract::The cloned transcription factor hepatocyte nuclear factor 1 (HNF1) transactivates transcription from the hepatitis B virus (HBV) large surface antigen promoter but does not influence the transcriptional activities of the other three HBV promoters. This indicates that this transcription factor can differentially influe...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.11.5774-5781.1991

    authors: Raney AK,Easton AJ,Milich DR,McLachlan A

    更新日期:1991-11-01 00:00:00

  • Generation and characterization of monoclonal antibodies to the putative CD4-binding domain of human immunodeficiency virus type 1 gp120.

    abstract::A panel of seven monoclonal antibodies against the relatively conserved CD4-binding domain on human immunodeficiency virus type 1 (HIV-1) gp120 was generated by immunizing mice with purified gp120. These monoclonal antibodies reacted specifically with gp120 in an enzyme-linked immunosorbent assay and Western blots (im...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.9.3579-3585.1989

    authors: Sun NC,Ho DD,Sun CR,Liou RS,Gordon W,Fung MS,Li XL,Ting RC,Lee TH,Chang NT

    更新日期:1989-09-01 00:00:00

  • Tetramerization of Phosphoprotein is Essential for Respiratory Syncytial Virus Budding while its N Terminal Region Mediates Direct Interactions with the Matrix Protein.

    abstract::It was shown previously that the Matrix (M), Phosphoprotein (P), and the Fusion (F) proteins of Respiratory syncytial virus (RSV) are sufficient to produce virus-like particles (VLPs) that resemble the RSV infection-induced virions. However, the exact mechanism and interactions among the three proteins are not known. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02217-20

    authors: Bajorek M,Galloux M,Richard CA,Szekely O,Rosenzweig R,Sizun C,Eleouet JF

    更新日期:2021-01-06 00:00:00

  • Mechanistic insights into the enhancement of adeno-associated virus transduction by proteasome inhibitors.

    abstract::Proteasome inhibitors (e.g., bortezomib, MG132) are known to enhance adeno-associated virus (AAV) transduction; however, whether this results from pleotropic proteasome inhibition or off-target serine and/or cysteine protease inhibition remains unresolved. Here, we examined recombinant AAV (rAAV) effects of a new prot...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01826-13

    authors: Mitchell AM,Samulski RJ

    更新日期:2013-12-01 00:00:00

  • B-cell lines immortalized with an Epstein-Barr virus mutant lacking the Cp EBNA2 enhancer are biased toward utilization of the oriP-proximal EBNA gene promoter Wp1.

    abstract::During Epstein-Barr virus (EBV) latent infection of B lymphocytes in vitro, six viral nuclear antigens (EBNAs) are expressed from one of two promoters, Cp or Wp, whose activities have previously been shown to be mutually exclusive in established lymphoblastoid cell lines. Initially after infection, the EBNA genes are ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.12.9134-9142.1997

    authors: Yoo LI,Mooney M,Puglielli MT,Speck SH

    更新日期:1997-12-01 00:00:00

  • Initiation of poliovirus plus-strand RNA synthesis in a membrane complex of infected HeLa cells.

    abstract::An in vitro poliovirus RNA-synthesizing system derived from a crude membrane fraction of infected HeLa cells was used to analyze the mechanism of initiation of poliovirus plus-strand RNA synthesis. This system contains an activity that synthesizes the nucleotidyl proteins VPg-pU and VPg-pUpU. These molecules represent...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.60.1.43-53.1986

    authors: Takeda N,Kuhn RJ,Yang CF,Takegami T,Wimmer E

    更新日期:1986-10-01 00:00:00

  • The C-terminal proline-rich tail of human immunodeficiency virus type 2 Vpx is necessary for nuclear localization of the viral preintegration complex in nondividing cells.

    abstract::Human immunodeficiency virus type 2 (HIV-2), like other lentiviruses, is capable of infecting nondividing T cells and macrophages. The present work shows that in HIV-2-infected cells, Vpx is necessary for efficient nuclear import of the preintegration complex. In agreement with this finding, the subcellular localizati...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.13.6162-6167.2000

    authors: Pancio HA,Vander Heyden N,Ratner L

    更新日期:2000-07-01 00:00:00

  • Restricted V-segment usage in T-cell receptors from cytotoxic T lymphocytes specific for a major epitope of lymphocytic choriomeningitis virus.

    abstract::Cytotoxic T lymphocytes (CTL) play an important role in recovery from a number of viral infections. They are also implicated in virus-induced immunopathology as best demonstrated in lymphocytic choriomeningitis virus (LCMV) infection of adult immunocompetent mice. In the present study, the structure of the T-cell rece...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.12.5919-5926.1990

    authors: Yanagi Y,Maekawa R,Cook T,Kanagawa O,Oldstone MB

    更新日期:1990-12-01 00:00:00

  • Acid-resistant bovine pestivirus requires activation for pH-triggered fusion during entry.

    abstract::The route of internalization of the pestivirus bovine viral diarrhea virus (BVDV) was studied by using different chemical and biophysical inhibitors of endocytosis. Expression of the dominant-negative mutant Dyn(K44A) of the GTPase dynamin in MDBK cells, as well as the treatment of the cells with chlorpromazine and be...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.7.4191-4200.2005

    authors: Krey T,Thiel HJ,Rümenapf T

    更新日期:2005-04-01 00:00:00

  • The PA and HA gene-mediated high viral load and intense innate immune response in the brain contribute to the high pathogenicity of H5N1 avian influenza virus in mallard ducks.

    abstract::Most highly pathogenic avian influenza A viruses cause only mild clinical signs in ducks, serving as an important natural reservoir of influenza A viruses. However, we isolated two H5N1 viruses that are genetically similar but differ greatly in virulence in ducks. A/Chicken/Jiangsu/k0402/2010 (CK10) is highly pathogen...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00760-13

    authors: Hu J,Hu Z,Mo Y,Wu Q,Cui Z,Duan Z,Huang J,Chen H,Chen Y,Gu M,Wang X,Hu S,Liu H,Liu W,Liu X,Liu X

    更新日期:2013-10-01 00:00:00

  • Kaposi's sarcoma-associated herpesvirus encodes a bZIP protein with homology to BZLF1 of Epstein-Barr virus.

    abstract::Kaposi's sarcoma-associated herpesvirus (KSHV) is a recently discovered human gamma herpesvirus strongly implicated in AIDS-related neoplasms. We report here the identification in the KSHV genome of a gene for a protein designated K-bZIP and belonging to the basic-leucine zipper (bZIP) family of transcription factors....

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.3.1909-1917.1999

    authors: Lin SF,Robinson DR,Miller G,Kung HJ

    更新日期:1999-03-01 00:00:00

  • Nasal immunization of mice with virus-like particles protects offspring against rotavirus diarrhea.

    abstract::Rotavirus is the major cause of diarrhea among young infants in both humans and animals. Immune protection of newborns by vaccination is difficult to achieve since there is not enough time to mount an immune response before exposure to the virus. We have designed a vaccination strategy mediating transfer of neutralizi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.19.8966-8971.2000

    authors: Coste A,Sirard JC,Johansen K,Cohen J,Kraehenbuhl JP

    更新日期:2000-10-01 00:00:00

  • Mouse cytomegalovirus M33 is necessary and sufficient in virus-induced vascular smooth muscle cell migration.

    abstract::Mouse cytomegalovirus (MCMV) encodes two potential seven-transmembrane-spanning proteins with homologies to cellular chemokine receptors, M33 and M78. While these virus-encoded chemokine receptors are necessary for the in vivo pathogenesis of MCMV, the function of these proteins is unknown. Since vascular smooth muscl...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.16.10788-10795.2005

    authors: Melnychuk RM,Smith P,Kreklywich CN,Ruchti F,Vomaske J,Hall L,Loh L,Nelson JA,Orloff SL,Streblow DN

    更新日期:2005-08-01 00:00:00

  • Effects of nonleukemogenic and wild-type Moloney murine leukemia virus on lymphoid cells in vivo: identification of a preleukemic shift in thymocyte subpopulations.

    abstract::Infection of mice with Moloney murine leukemia virus (M-MuLV) as well as with a nonpathogenic variant, Mo+PyF101 M-MuLV, was studied. Mo+PyF101 M-MuLV differs from wild-type M-MuLV by the addition of enhancer sequences from polyomavirus in the long terminal repeat. Previous experiments indicated that Mo+PyF101 establi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.60.2.423-430.1986

    authors: Davis BR,Chandy KG,Brightman BK,Gupta S,Fan H

    更新日期:1986-11-01 00:00:00

  • Induction of P1 prophage and superinfection by bacteriophage T1.

    abstract::Induction of the resident prophage did not permit restricted phage T1 to replicate freely in P1-lysogenic hosts. A few induced cells did become infectible. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.3.4.448-449.1969

    authors: Christensen JR,Werner ER

    更新日期:1969-04-01 00:00:00

  • Transfection of Escherichia coli spheroplasts. I. General facilitation of double-stranded deoxyribonucleic acid infectivity by protamine sulfate.

    abstract::The addition of 25 mug of protamine sulfate per ml to lysozyme-ethylenediamine-tetraacetic acid spheroplasts of Escherichia coli stimulates transfection not only for T1 phage deoxyribonucleic acid (DNA; Hotz and Mauser, 1969) but also for the following phage DNA species: lambda, 10,000-fold to an efficiency of 10(-3) ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.7.5.646-650.1971

    authors: Benzinger R,Kleber I,Huskey R

    更新日期:1971-05-01 00:00:00

  • The influenza A virus PB1-F2 protein targets the inner mitochondrial membrane via a predicted basic amphipathic helix that disrupts mitochondrial function.

    abstract::The 11th influenza A virus gene product is an 87-amino-acid protein provisionally named PB1-F2 (because it is encoded by an open reading frame overlapping the PB1 open reading frame). A significant fraction of PB1-F2 localizes to the inner mitochondrial membrane in influenza A virus-infected cells. PB1-F2 appears to e...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.13.7214-7224.2003

    authors: Gibbs JS,Malide D,Hornung F,Bennink JR,Yewdell JW

    更新日期:2003-07-01 00:00:00

  • Liver sinusoidal endothelial cells are a site of murine cytomegalovirus latency and reactivation.

    abstract::Latent cytomegalovirus (CMV) is frequently transmitted by organ transplantation, and its reactivation under conditions of immunosuppressive prophylaxis against graft rejection by host-versus-graft disease bears a risk of graft failure due to viral pathogenesis. CMV is the most common cause of infection following liver...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00870-09

    authors: Seckert CK,Renzaho A,Tervo HM,Krause C,Deegen P,Kühnapfel B,Reddehase MJ,Grzimek NK

    更新日期:2009-09-01 00:00:00

  • Localization of sequences responsible for trans-activation of the equine infectious anemia virus long terminal repeat.

    abstract::We used the Escherichia coli chloramphenicol acetyltransferase gene (cat) to study sequences that influence expression of the equine infectious anemia virus (EIAV) genome. The EIAV long terminal repeat (LTR) directed CAT activity in a canine cell line, but at levels much lower than those achieved with other eucaryotic...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.1.120-126.1988

    authors: Sherman L,Gazit A,Yaniv A,Kawakami T,Dahlberg JE,Tronick SR

    更新日期:1988-01-01 00:00:00