Cleavage of DNA by the insulin-mimetic compound, NH4[VO(O2)2(phen)].

Abstract:

:The kinetics and mechanism of cleavage of DNA by the insulin-mimetic peroxo-vanadate NH4[VO(O2)2(phen)], pV, are described. In the presence of low energy UV radiation or biologically common reducing agents, pV decomposes into the monomer, dimer, and tetramer of vanadate and an uncharacterized compound of V4+ as shown by 51V NMR, ESR, and absorption spectra. The rate of photodecomposition of pV is reduced in the presence of calf thymus DNA, indicating that a decomposition product of the peroxo-vanadate, that is important in the destruction pathway of the complex, is interacting with DNA. This species, probably a short-lived complex of V4+, may also be responsible for the observed catalytic decomposition of pV in the absence of DNA by ascorbate. If closed circular pBR322 DNA is present when the peroxo-vanadate is destroyed by either UV radiation or reducing agents, the polymer may have its sugar-phosphate backbone broken. Closed circular DNA (form I) is converted into nicked circular DNA (form II) and linear DNA (form III). The amounts of the various forms produced as a function of irradiation time and peroxo-vanadate concentration were fit to a kinetic model to derive rate constants for the conversions. The kinetic analysis shows that pV is a single-strand nicking agent which exhibits some base and/or sequence preference. Furthermore, the pH dependences of the rates for conversion of form I to form II and for conversion of form II to form III are different, indicating that the nature of the chemistry at the site of cleavage on DNA influences further cutting by activated pV. Reduced amounts of DNA breakage in the presence of various salts and metal binding ligands indicate that a short-lived reactive complex of V4+, not the V4+ species detected by ESR at long irradiation times, is important in the cleavage process. The susceptibility of pV to decomposition by biologically common reducing agents suggests that metabolites of the agent, and not the compound itself, are responsible for its insulin-mimetic effects.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Hiort C,Goodisman J,Dabrowiak JC

doi

10.1021/bi9606253

subject

Has Abstract

pub_date

1996-09-24 00:00:00

pages

12354-62

issue

38

eissn

0006-2960

issn

1520-4995

pii

bi9606253

journal_volume

35

pub_type

杂志文章
  • Characterization of a heparin-binding site on the catalytic domain of factor XIa: mechanism of heparin acceleration of factor XIa inhibition by the serpins antithrombin and C1-inhibitor.

    abstract::Heparin accelerates inhibition of factor XIa (fXIa) by the serpins antithrombin (AT) and C1-inhibitor (C1-INH) by more than 2 orders of magnitude. The mechanism of the heparin-mediated acceleration of fXIa inhibition by these serpins is incompletely understood, as heparin appears to interact with both the catalytic an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802298r

    authors: Yang L,Sun MF,Gailani D,Rezaie AR

    更新日期:2009-02-24 00:00:00

  • Structural interactions dictate the kinetics of macrophage migration inhibitory factor inhibition by different cancer-preventive isothiocyanates.

    abstract::Regulation of cellular processes by dietary nutrients is known to affect the likelihood of cancer development. One class of cancer-preventive nutrients, isothiocyanates (ITCs), derived from the consumption of cruciferous vegetables, is known to have various effects on cellular biochemistry. One target of ITCs is macro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3005494

    authors: Crichlow GV,Fan C,Keeler C,Hodsdon M,Lolis EJ

    更新日期:2012-09-25 00:00:00

  • Tuning a polar molecule for selective cytoplasmic delivery by a pH (Low) insertion peptide.

    abstract::Drug molecules are typically hydrophobic and small in order to traverse membranes to reach cytoplasmic targets, but we have discovered that more polar molecules can be delivered across membranes using water-soluble, moderately hydrophobic membrane peptides of the pHLIP (pH low insertion peptide) family. Delivery of po...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2009773

    authors: Wijesinghe D,Engelman DM,Andreev OA,Reshetnyak YK

    更新日期:2011-11-29 00:00:00

  • Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature.

    abstract::We have measured the base-pair lifetimes in oligodeoxynucleotides containing tracts of A.T base pairs using imino proton magnetic resonance. When the tract contains more than four consecutive A.T base pairs, possibly including a 5'-AT step but not a 5'-TA step, anomalously long lifetimes are observed. For example, the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00425a004

    authors: Leroy JL,Charretier E,Kochoyan M,Guéron M

    更新日期:1988-12-13 00:00:00

  • Conformation of valine side chains in ribonuclease T1 determined by NMR studies of homonuclear and heteronuclear 3J coupling constants.

    abstract::A conformational analysis of the valine side chains of ribonuclease T1 (RNase T1) was performed using NMR spectroscopy, in particular homonuclear (1H, 1H and 13C, 13C) and heteronuclear (1H, 15N and 1H, 13C) vicinal spin-spin coupling constants as obtained from E.COSY-type NMR experiments. The coupling constants relat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00184a017

    authors: Karimi-Nejad Y,Schmidt JM,Rüterjans H,Schwalbe H,Greisinger C

    更新日期:1994-05-10 00:00:00

  • Factors affecting the stability and conformation of Locusta migratoria apolipophorin III.

    abstract::Apolipophorin III (apoLp-III) from the migratory locust, Locusta migratoria, represents the only full-length apolipoprotein whose three-dimensional structure has been solved. In the present study, spectroscopic methods have been employed to investigate the effects of deglycosylation (via endoglycosidase F treatment) a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00178a019

    authors: Weers PM,Kay CM,Oikawa K,Wientzek M,Van der Horst DJ,Ryan RO

    更新日期:1994-03-29 00:00:00

  • Substrate binding-induced changes in the EPR spectra of the ferrous nitric oxide complexes of neuronal nitric oxide synthase.

    abstract::A versatile diatomic physiological messenger, nitric oxide (NO), is biosynthesized by a group of flavo-heme enzymes, the nitric oxide synthases. We have examined the active site of the neuronal isoform by EPR spectroscopy of the ferrous nitric oxide complex. The nitric oxide complex of the substrate-free enzyme exhibi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970823+

    authors: Migita CT,Salerno JC,Masters BS,Martasek P,McMillan K,Ikeda-Saito M

    更新日期:1997-09-09 00:00:00

  • The interface between the EGF2 domain and the protease domain in blood coagulation factor IX contributes to factor VIII binding and factor X activation.

    abstract::The light chain of activated factor IX (FIXa) is involved in a number of functional properties, including FIXa enzymatic activity. This suggests the existence of a functional link between the FIXa light chain and the catalytic domain. The FIXa structure includes a few putative interactions between EGF2 and the proteas...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060451h

    authors: Fribourg C,Meijer AB,Mertens K

    更新日期:2006-09-05 00:00:00

  • Evidence for a slow tertiary relaxation in the reaction of tert-butyl isocyanide with horseradish peroxidase.

    abstract::The kinetics of tert-butyl isocyanide binding to the heme protein horseradish peroxidase (HRP) at 22 degrees C was examined on all time scales, from minutes to picoseconds, in aqueous borate buffer at pH 9.08. Unlike myoglobin (Mb) or hemoglobin, HRP shows two bimolecular ligand binding processes. For comparison, bind...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9518149

    authors: Bandyopadhyay D,Walda KN,Grogan TM,Magde D,Traylor TG,Sharma VS

    更新日期:1996-02-06 00:00:00

  • Histone H2A phosphorylation in animal cells: functional considerations.

    abstract::We have sought to determine the role of histone H2A phosphorylation in chromatin by examining the distribution of the phosphorylated and unphosphorylated forms of this core histone within the nuclei of mouse and human cells. At any time, only about 15% of the H2A of whole chromatin is in the phosphorylated form, and i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00539a021

    authors: Prentice DA,Loechel SC,Kitos PA

    更新日期:1982-05-11 00:00:00

  • Hydrolysis of proteins using dipeptidyl aminopeptidases: analysis of the N-terminal portion of spinach plastocyanin.

    abstract::The exopeptidases dipeptidyl aminopeptidases I and IV were used to hydrolyze the N-terminal portion of spinach plastocyanin to dipeptides. The enzymes were used individually as well as in a mixture and the dipeptides were analyzed by combined gas chromatography-mass spectrometry. Data are presented for native plastocy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00596a009

    authors: Seifert WE Jr,Caprioli RM

    更新日期:1978-02-07 00:00:00

  • Characterization of the interaction between androgen receptor and a new transcriptional inhibitor, SHP.

    abstract::SHP (short heterodimer partner) is an orphan nuclear receptor, first described for its interaction with nuclear receptors. This study explores a new way of inhibiting the androgen-signaling pathway. We demonstrated that SHP inhibited up to 97% of AR-induced activity. Characterization of AR/SHP interaction provided evi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011384o

    authors: Gobinet J,Auzou G,Nicolas JC,Sultan C,Jalaguier S

    更新日期:2001-12-18 00:00:00

  • Accumulation of a globo-series glycolipid having Gal alpha 1-3Gal in PC12h pheochromocytoma cells.

    abstract::In a previous paper, we reported the presence of globoside as a major neutral glycolipid in PC12 pheochromocytoma cells [Ariga, T., Macala, L. J., Saito, M., Margolis, R. K., Greene, L. A., Margolis, R. U., & Yu, R. K. (1988) Biochemistry 27, 52-58]. Recently, we found that subcloned PC12h cells accumulated another un...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00414a058

    authors: Ariga T,Yu RK,Scarsdale JN,Suzuki M,Kuroda Y,Kitagawa H,Miyatake T

    更新日期:1988-07-12 00:00:00

  • Generation and characterization of two transgenic mouse lines expressing human ApoE2 in neurons and glial cells.

    abstract::Apolipoprotein E (apoE) isoforms are key determinants of susceptibility to late-onset Alzheimer's disease (AD). The epsilon 4 and epsilon 2 alleles have been associated with increased and decreased risk for AD, respectively. We have generated and characterized transgenic mice in which the human apoE2 gene is expressed...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015971l

    authors: Georgopoulos S,McKee A,Kan HY,Zannis VI

    更新日期:2002-07-30 00:00:00

  • Binding domain of human parathyroid hormone receptor: from conformation to function.

    abstract::A 31 amino acid fragment of the extracellular N-terminus of the human G-protein coupled receptor for parathyroid hormone (PTH1R) has been structurally characterized by NMR and molecular dynamics simulations. The fragment PTH1R[168-198] includes residues 173-189, shown by photoaffinity cross-linking to be a contact dom...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981265h

    authors: Pellegrini M,Bisello A,Rosenblatt M,Chorev M,Mierke DF

    更新日期:1998-09-15 00:00:00

  • The Structure of the Periplasmic Sensor Domain of the Histidine Kinase CusS Shows Unusual Metal Ion Coordination at the Dimeric Interface.

    abstract::In bacteria, two-component systems act as signaling systems to respond to environmental stimuli. Two-component systems generally consist of a sensor histidine kinase and a response regulator, which work together through histidyl-aspartyl phosphorelay to result in gene regulation. One of the two-component systems in Es...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00707

    authors: Affandi T,Issaian AV,McEvoy MM

    更新日期:2016-09-20 00:00:00

  • Efficient substrate cleavage catalyzed by hammerhead ribozymes derivatized with selenium for X-ray crystallography.

    abstract::Because oxygen and selenium are in the same group (Family VI) in the periodic table, the site-specific mutagenesis at the atomic level by replacing RNA oxygen with selenium can provide insights on the structure and function of catalytic RNAs. We report here the first Se-derivatized ribozymes transcribed with all nucle...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060455m

    authors: Brandt G,Carrasco N,Huang Z

    更新日期:2006-07-25 00:00:00

  • Fluorescent oligonucleotides and deoxynucleotide triphosphates: preparation and their interaction with the large (Klenow) fragment of Escherichia coli DNA polymerase I.

    abstract::Fluorescent derivatives of short oligonucleotides of defined sequence were prepared by the incorporation of 5-(propylamino)uridine via current phosphoramidite chemistry, followed by derivatization of the propylamine function with mansyl chloride. These oligomers, annealed to complementary oligomers, yielded short dupl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00437a014

    authors: Allen DJ,Darke PL,Benkovic SJ

    更新日期:1989-05-30 00:00:00

  • Structure of influenza virus neuraminidase B/Lee/40 complexed with sialic acid and a dehydro analog at 1.8-A resolution: implications for the catalytic mechanism.

    abstract::Neuraminidase is one of the two glycoprotein spikes protruding from the influenza virus membrane. We have determined by X-ray crystallography the native structure of B/Lee/40 neuraminidase (NA) and the structures of its crystals soaked with a substrate, N-acetylneuraminyllactose (NANL), and an inhibitor, 2-deoxy-2,3-d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00193a002

    authors: Janakiraman MN,White CL,Laver WG,Air GM,Luo M

    更新日期:1994-07-12 00:00:00

  • Effects of base composition on the negative cooperativity and binding mode transitions of Escherichia coli SSB-single-stranded DNA complexes.

    abstract::We have examined the ability of the Escherichia coli single-stranded DNA binding protein (SSB) tetramer to form its different binding modes on poly(dC), poly(U), and poly(A) over a range of NaCl and NaF concentrations for comparison with previous studies with poly(dT). In reverse titrations with poly(U) and poly(A) at...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00186a016

    authors: Lohman TM,Bujalowski W

    更新日期:1994-05-24 00:00:00

  • Dynamin is membrane-active: lipid insertion is induced by phosphoinositides and phosphatidic acid.

    abstract::Dynamin is a large GTPase involved in the regulation of membrane constriction and fission during receptor-mediated endocytosis. Dynamin contains a pleckstrin-homology domain which is essential for endocytosis and which binds to anionic phospholipids. Here, we show for the first time that dynamin is a membrane-active m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000971r

    authors: Burger KN,Demel RA,Schmid SL,de Kruijff B

    更新日期:2000-10-10 00:00:00

  • Identification of the cyclosporin-binding site in P-glycoprotein.

    abstract::The binding site of cyclosporin A to P-glycoprotein was characterized by using a multidrug-resistant Chinese hamster ovary cell line. P-glycoprotein photolabeled with diazirine-cyclosporin A analogue was purified by a two-step process involving continuous elution electrophoresis followed by wheat germ agglutinin-agaro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981992c

    authors: Demeule M,Laplante A,Murphy GF,Wenger RM,Béliveau R

    更新日期:1998-12-22 00:00:00

  • Contribution of light chain residues to high affinity binding in an HIV-1 antibody explored by combinatorial scanning mutagenesis.

    abstract::Detailed analysis of factors governing high affinity antibody-antigen interactions yields important insight into molecular recognition and facilitates the design of functional antibody libraries. Here we describe comprehensive mutagenesis of the light chain complementarity determining regions (CDRs) of HIV-1 antibody ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100293q

    authors: Da Silva GF,Harrison JS,Lai JR

    更新日期:2010-07-06 00:00:00

  • Inhibition of eukaryotic translation by analogues of messenger RNA 5'-cap: chemical and biological consequences of 5'-phosphate modifications of 7-methylguanosine 5'-monophosphate.

    abstract::New analogues of 7-methylguanosine 5'-monophosphate (m7GMP) were synthesized with modified 5'-phosphate moieties by replacement of -O with -H, -CH3, or -NH2. Additional analogues were synthesized with 8-methyl- or 8-aminoguanine base substitutions or ring-opened ribose (2',3'-diol). These compounds were analyzed by 1H...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00388a028

    authors: Darzynkiewicz E,Ekiel I,Lassota P,Tahara SM

    更新日期:1987-07-14 00:00:00

  • Isolation of L-cell messenger RNA which lacks poly(adenylate).

    abstract::It has been found that centrifugation of (ethylenediamine)tetraacetic acid dissociated L-cell polyribosomes at 25 degrees C through preformed CS2SO4 density gradients containing 15% dimethyl sulfoxide resolves them into two distinct classes of particles that contain ribosomal and messenger RNA, respectively. Ribosomal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00661a019

    authors: Greenberg JR

    更新日期:1976-08-10 00:00:00

  • Insights into Cu(I) exchange in HAH1 using quantum mechanical and molecular simulations.

    abstract::The human antioxidant protein, HAH1, is an important participant in a Cu(I) transport chain, delivering one Cu(I) ion to the Wilson's (WND) or Menkes disease protein (MNK). Full geometry optimizations and second-derivative calculations were performed on several binding site models using the B3LYP functional to derive ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7007195

    authors: Op't Holt BT,Merz KM Jr

    更新日期:2007-07-31 00:00:00

  • Purification of cyclic 3',5'-nucleotide phosphodiesterase inhibitory protein by affinity chromatography on activator protein coupled to Sepharose.

    abstract::The Ca2+-dependent, reversible, interaction of cyclic adenosine 3',5'-monophosphate (cAMP) phosphodiesterase with its activator has been used to purify the enzyme by affinity chromatography. Activator-dependent cAMP phosphodiesterase is only a minor component of the proteins specifically adsorbed in the presence of Ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00594a017

    authors: Klee CB,Krinks MH

    更新日期:1978-01-10 00:00:00

  • H-Ras peptide and protein substrates bind protein farnesyltransferase as an ionized thiolate.

    abstract::The zinc metalloenzyme protein farnesyltransferase (FTase) catalyzes the alkylation of a cysteine residue of protein substrates with a 15 carbon farnesyl group. We have developed fluorescence assays to directly measure the affinity of the enzyme for peptide and protein (Ras) substrates. A peptide corresponding to the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981525v

    authors: Hightower KE,Huang CC,Casey PJ,Fierke CA

    更新日期:1998-11-03 00:00:00

  • Structure of toxic shock syndrome toxin 1.

    abstract::The three-dimensional structure of toxic shock syndrome toxin 1 (TSST-1) from Staphylococcus aureus has been determined and refined to an R value of 0.226 for data between 8- and 2.5-A resolution. Overall, the structure of TSST-1 is similar to that of another superantigen, staphylococcal enterotoxin B (SEB). The key d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00213a001

    authors: Prasad GS,Earhart CA,Murray DL,Novick RP,Schlievert PM,Ohlendorf DH

    更新日期:1993-12-21 00:00:00

  • Phospholipid transfer protein is present in human tear fluid.

    abstract::The human tear fluid film consists of a superficial lipid layer, an aqueous middle layer, and a hydrated mucin layer located next to the corneal epithelium. The superficial lipid layer protects the eye from drying and is composed of polar and neutral lipids provided by the meibomian glands. Excess accumulation of lipi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050151k

    authors: Jauhiainen M,Setälä NL,Ehnholm C,Metso J,Tervo TM,Eriksson O,Holopainen JM

    更新日期:2005-06-07 00:00:00