Substrate binding-induced changes in the EPR spectra of the ferrous nitric oxide complexes of neuronal nitric oxide synthase.

Abstract:

:A versatile diatomic physiological messenger, nitric oxide (NO), is biosynthesized by a group of flavo-heme enzymes, the nitric oxide synthases. We have examined the active site of the neuronal isoform by EPR spectroscopy of the ferrous nitric oxide complex. The nitric oxide complex of the substrate-free enzyme exhibits a cytochrome P450-type EPR spectrum typical of a hexacoordinate NO-heme complex with a non-nitrogenous proximal axial heme ligand. The NO complex of the substrate-free enzyme is rather unstable and spontaneously converts to a cytochrome P420 type pentacoordinate denatured form. Binding of L-arginine (l-Arg) enhances the stability of the hexacoordinate NO form. The EPR spectrum of the NO adduct of the enzyme-substrate complex has an increased g-anisotropy and well-resolved hyperfine couplings due to the 14N of nitric oxide. Significant perturbations in the NO EPR spectrum were observed upon Nomega-monomethyl-L-Arg and Nomega-hydroxy-L-Arg binding. The perturbations in the EPR spectrum indicate that L-Arg and its derivatives bind on the distal site of the heme in very close proximity to the bound NO to cause alterations in the heme-NO coordination structure. Interactions between the bound NO and the substrate or its analogues appear to affect the Fe-NO geometry, resulting in the observed spectral changes. We infer that analogous interactions with oxygen might be involved in the hydroxylation events during enzyme catalysis of nitric oxide synthase.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Migita CT,Salerno JC,Masters BS,Martasek P,McMillan K,Ikeda-Saito M

doi

10.1021/bi970823+

subject

Has Abstract

pub_date

1997-09-09 00:00:00

pages

10987-92

issue

36

eissn

0006-2960

issn

1520-4995

pii

bi970823+

journal_volume

36

pub_type

杂志文章
  • Role of histidine-40 in ribonuclease T1 catalysis: three-dimensionalstructures of the partially active His40Lys mutant.

    abstract::Histidine-40 is known to participate in phosphodiester transesterification catalyzed by the enzyme ribonuclease T1. A mutant enzyme with a lysine replacing the histidine-40 (His40Lys RNase T1) retains considerable catalytic activity [Steyaert, J., Hallenga, K., Wyns, L., & Stanssens, P. (1990) Biochemistry 29, 9064-90...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a009

    authors: Zegers I,Verhelst P,Choe HW,Steyaert J,Heinemann U,Saenger W,Wyns L

    更新日期:1992-11-24 00:00:00

  • Reactions of the sarcoplasmic reticulum calcium adenosinetriphosphatase with adenosine 5'-triphosphate and Ca2+ that are not satisfactorily described by an E1-E2 model.

    abstract::Phosphorylation of the sarcoplasmic reticulum calcium ATPase, E, is first order with kb = 70 +/- 7 s-1 after free enzyme was mixed with saturating ATP and 50 microM Ca2+; this is one-third the rate constant of 220 s-1 for phosphorylation of enzyme preincubated with calcium, cE.Ca2, after being mixed with ATP under the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a019

    authors: Stahl N,Jencks WP

    更新日期:1987-12-01 00:00:00

  • Self-association of human and porcine relaxin as assessed by analytical ultracentrifugation and circular dichroism.

    abstract::The self-association properties of recombinant DNA derived human relaxin, and porcine relaxin isolated from porcine ovaries, have been studied by sedimentation equilibrium analytical ultracentrifugation and circular dichroism (CD). The human relaxin ultracentrifuge data were adequately defined by a monomer-dimer self-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00245a006

    authors: Shire SJ,Holladay LA,Rinderknecht E

    更新日期:1991-08-06 00:00:00

  • Orientation-conserved transfer of symmetric Krebs cycle intermediates in mammalian tissue.

    abstract::Metabolism of [2-13C]-, [3-13C]-, and [1,2,3-13C]propionate in perfused rat livers and [2-13C]-acetate in perfused rat hearts has been examined in tissue extracts by 13C NMR. Label from [2-13C]-propionate was preferentially incorporated into the C2 carbon of lactate, alanine, and aspartate in liver tissue while label ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00186a029

    authors: Sherry AD,Sumegi B,Miller B,Cottam GL,Gavva S,Jones JG,Malloy CR

    更新日期:1994-05-24 00:00:00

  • Alternate substrate binding modes to two mutant (D98N and H255N) forms of nitrite reductase from Alcaligenes faecalis S-6: structural model of a transient catalytic intermediate.

    abstract::High-resolution nitrite soaked oxidized and reduced crystal structures of two active site mutants, D98N and H255N, of nitrite reductase (NIR) from Alcaligenes faecalis S-6 were determined to better than 2.0 A resolution. In the oxidized D98N nitrite-soaked structures, nitrite is coordinated to the type II copper via i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0107400

    authors: Boulanger MJ,Murphy ME

    更新日期:2001-08-07 00:00:00

  • Kinetics of peptide binding to the class II MHC protein I-Ek.

    abstract::Class II MHC glycoproteins bind short (7-25 amino acid) peptides in an extended type II polyproline-like conformation and present them for immune recognition. Because empty MHC is unstable, measurement of the rate of the second-order reaction between peptide and MHC is challenging. In this report, we use dissociation ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9921337

    authors: Kasson PM,Rabinowitz JD,Schmitt L,Davis MM,McConnell HM

    更新日期:2000-02-08 00:00:00

  • Inhibitors can activate proteases to catalyze the synthesis and hydrolysis of peptides.

    abstract::Competitive inhibitors can activate proteases (papain, trypsin, and cathepsin S) to catalyze the synthesis of peptide bonds and accelerate the hydrolysis of poor substrates (from 1 to 99%). Reaction mixtures contained intermediate molecules that were formed by the coupling of the inhibitor with the poor substrate. Thi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061910h

    authors: Schechter I,Ziv E

    更新日期:2006-12-12 00:00:00

  • Adaptation to altered growth temperatures in Acholeplasma laidlawii B: Fourier transform infrared studies of acyl chain conformational order in live cells.

    abstract::Acholeplasma laidlawii B cells, highly enriched in saturated C14 and C15 fatty acids, have been grown at several temperatures. Conformational order in the acyl chains of live cell membranes has been monitored with Fourier-transform infrared (FT-IR) spectroscopy. Coupled CH2 wagging progressions, characteristic of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00179a037

    authors: Moore DJ,Mendelsohn R

    更新日期:1994-04-05 00:00:00

  • Mechanistic studies of lantibiotic-induced permeabilization of phospholipid vesicles.

    abstract::Nisin is a cationic polycyclic bacteriocin secreted by some lactic acid bacteria. Nisin has previously been shown to permeabilize liposomes. The interaction of nisin was analyzed with liposomes prepared of the zwitterionic phosphatidylcholine (PC) and the anionic phosphatidylglycerol (PG). Nisin induces the release of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00005a017

    authors: Driessen AJ,van den Hooven HW,Kuiper W,van de Kamp M,Sahl HG,Konings RN,Konings WN

    更新日期:1995-02-07 00:00:00

  • Energetic effects of magnesium in the recognition of adenosine nucleotides by the F(1)-ATPase beta subunit.

    abstract::Nucleotide-induced conformational changes of the catalytic beta subunits play a crucial role in the rotary mechanism of F(1)-ATPase. To gain insights into the energetic bases that govern the recognition of nucleotides by the isolated beta subunit from thermophilic Bacillus PS3 (Tbeta), the binding of this monomer to M...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1006767

    authors: Pulido NO,Salcedo G,Pérez-Hernández G,José-Núñez C,Velázquez-Campoy A,García-Hernández E

    更新日期:2010-06-29 00:00:00

  • Binding of beta-scorpion toxin: a physicochemical study.

    abstract::The binding to rat brain synaptosomes of a beta-scorpion toxin, i.e., toxin II of Centruroides suffusus suffusus (Css II), was studied as a function of pH, temperature, and concentration of some monovalent and divalent cations. At 10 degrees C and pH 6.0, the specific binding of 125I-labeled Css II corresponds to a si...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00301a018

    authors: Jover E,Bablito J,Couraud F

    更新日期:1984-03-13 00:00:00

  • Stoichiometry and specificity of lipid-protein interaction with myelin proteolipid protein studied by spin-label electron spin resonance.

    abstract::The interaction of spin-labeled lipids with the myelin proteolipid apoprotein in complexes with dimyristoylphosphatidylcholine of varying lipid/protein ratios has been studied with electron spin resonance spectroscopy. A first shell of approximately 10 lipids per 25 000-dalton protein is found to be motionally restric...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00300a011

    authors: Brophy PJ,Horváth LI,Marsh D

    更新日期:1984-02-28 00:00:00

  • Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1.

    abstract::The mechanism of oxidation of a peptide substrate by the flavoprotein lysine-specific demethylase (LSD1) has been examined using the effects of pH and isotopic substitution on steady-state and rapid-reaction kinetic parameters. The substrate contained the 21 N-terminal residues of histone H3, with a dimethylated lysyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900499w

    authors: Gaweska H,Henderson Pozzi M,Schmidt DM,McCafferty DG,Fitzpatrick PF

    更新日期:2009-06-16 00:00:00

  • Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1.

    abstract::FLI1 (Friend leukemia integration 1) is a metazoan transcription factor that is upregulated in a number of cancers. In addition, rearrangements of the fli1 gene cause sarcomas, leukemias, and lymphomas. These rearrangements encode oncogenic transcription factors, in which the DNA binding domain (DBD or ETS domain) of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01121

    authors: Hou C,Tsodikov OV

    更新日期:2015-12-22 00:00:00

  • Assignment of the 1H NMR spectrum and secondary structure elucidation of the single-stranded DNA binding protein encoded by the filamentous bacteriophage IKe.

    abstract::By means of 2D NMR techniques, all backbone resonances in the 1H NMR spectrum of the single-stranded DNA binding protein encoded by gene V of the filamentous phage IKe have been assigned sequence specifically (at pH 4.6, T = 298 K). In addition, a major part of the side chain resonances could be assigned as well. Anal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00119a039

    authors: van Duynhoven JP,Folkers PJ,Prinse CW,Harmsen BJ,Konings RN,Hilbers CW

    更新日期:1992-02-04 00:00:00

  • 15N- and 13C-labeled media from Anabaena sp. for universal isotopic labeling of bacteriocins: NMR resonance assignments of leucocin A from Leuconostoc gelidum and nisin A from Lactococcus lactis.

    abstract::A procedure for universal 13C and/or 15N labeling of microbial peptides which are produced by fermentation in complex media and its application to two food-preserving bacteriocins from lactic acid bacteria are described. Isotopic enrichment of nisin A (from Lactococcus lactis) and of leucocin A (from Leuconostoc gelid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00052a039

    authors: Sailer M,Helms GL,Henkel T,Niemczura WP,Stiles ME,Vederas JC

    更新日期:1993-01-12 00:00:00

  • Thermodynamics of ferredoxin binding to ferredoxin:NADP+ reductase and the role of water at the complex interface.

    abstract::The association of ferredoxin with ferredoxin:NADP+ reductase (both proteins from spinach chloroplasts) was characterized by isothermal titration calorimetry and fluorescence quenching titration. The formation of the complex is mainly driven by a positive entropy change (delta S = 125 +/- 8 J mol-1 K-1). The calorimet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00249a019

    authors: Jelesarov I,Bosshard HR

    更新日期:1994-11-15 00:00:00

  • Structure of a stable form of sulfheme.

    abstract::A stable green heme was extracted from ferric cyanosulfmyoglobin after it had undergone an internal conversion reaction. After iron removal and conversion to the methyl ester, the resulting green porphyrin was purified by high-pressure liquid chromatography. Visible, 1H NMR, and mass spectrometric studies provided evi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00374a021

    authors: Bondoc LL,Chau MH,Price MA,Timkovich R

    更新日期:1986-12-30 00:00:00

  • Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution.

    abstract::The rapid expansion of the amount of genomic and structural data has provided many examples of enzymes with evolutionarily related active sites that catalyze different reactions. Functional comparisons of these active sites can provide insight into the origins of the enormous catalytic proficiency of enzymes and the e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060847t

    authors: Zalatan JG,Fenn TD,Brunger AT,Herschlag D

    更新日期:2006-08-15 00:00:00

  • Effects of mutations in M4 of the gastric H+,K+-ATPase on inhibition kinetics of SCH28080.

    abstract::The effects of site-directed mutagenesis were used to explore the role of residues in M4 on the apparent Ki of a selective, K+-competitive inhibitor of the gastric H+,K+ ATPase, SCH28080. A double transfection expression system is described, utilizing HEK293 cells and separate plasmids encoding the alpha and beta subu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991837d

    authors: Munson KB,Lambrecht N,Sachs G

    更新日期:2000-03-21 00:00:00

  • Structural investigation of the binding of a herpesviral protein to the SH3 domain of tyrosine kinase Lck.

    abstract::Herpesvirus saimiri codes for a tyrosine kinase interacting protein (Tip) that interacts with both the SH3 domain and the kinase domain of the T-cell-specific tyrosine kinase Lck via two separate motifs. The activation of Lck by Tip is considered as a key event in the transformation of human T-lymphocytes during herpe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015986j

    authors: Schweimer K,Hoffmann S,Bauer F,Friedrich U,Kardinal C,Feller SM,Biesinger B,Sticht H

    更新日期:2002-04-23 00:00:00

  • Kinetic characterization of myosin head fragments with long-lived myosin.ATP states.

    abstract::We have separately expressed the Dictyosteliumdiscoideum myosin II nonhydrolyzer point mutations E459V and E476K [Ruppel, K. M., and Spudich, J. A. (1996) Mol. Biol. Cell 7, 1123-1136] in the soluble myosin head fragment M761-1R [Anson et al. (1996) EMBO J. 15, 6069-6074] and performed transient kinetic analyses to ch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi973143f

    authors: Friedman AL,Geeves MA,Manstein DJ,Spudich JA

    更新日期:1998-07-07 00:00:00

  • Beta-lactamase-catalyzed aminolysis of depsipeptides: peptide inhibition and a new kinetic mechanism.

    abstract::The aminolysis of the depsipeptide m-[[(phenylacetyl)glycyl]oxy]benzoic acid (1) by D-phenylalanine, catalyzed by the beta-lactamase of Enterobacter cloacae P99, is inhibited by the product of the reaction, (phenylacetyl)glycyl-D-phenylalanine (2), by the peptide analogue of 1, m-[(phenylacetyl)-glycinamido]benzoic ac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00443a015

    authors: Pazhanisamy S,Pratt RF

    更新日期:1989-08-22 00:00:00

  • The formylglycinamide ribonucleotide amidotransferase complex from Bacillus subtilis: metabolite-mediated complex formation.

    abstract::Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP- and glutamine-dependent formation of formylglycinamidine ribonucleotide, ADP, P(i), and glutamate in the fourth step of de novo purine biosynthesis. Like all amidotransferases (ATs), FGAR-AT is proposed to channel ammonia between a glutamin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049127h

    authors: Hoskins AA,Anand R,Ealick SE,Stubbe J

    更新日期:2004-08-17 00:00:00

  • Identification of the principal binding site for RGD-containing ligands in the alpha(V)beta(3) integrin: a photoaffinity cross-linking study.

    abstract::By superimposing data obtained by photo-cross-linking RGD-containing ligands to the human alpha(V)beta(3) integrin onto the crystal structure of the ectopic domain of this receptor (Xiong et al. (2001) Science 294, 339-345), we have identified the binding site for the RGD triad within this integrin. We synthesized thr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025690t

    authors: Yahalom D,Wittelsberger A,Mierke DF,Rosenblatt M,Alexander JM,Chorev M

    更新日期:2002-07-02 00:00:00

  • Formation of short-lived protein aggregates directly from the coil in two-state folding.

    abstract::Recent results on the 102 residue protein U1A show that protein aggregation is not always slow and irreversible but may take place transiently in refolding studies on a millisecond time scale. In this study we observe a similar aggregation behavior with the classical two-state protein CI2. Since both U1A and CI2 appea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9909997

    authors: Silow M,Tan YJ,Fersht AR,Oliveberg M

    更新日期:1999-10-05 00:00:00

  • The C-terminal aqueous-exposed domain of the 45 kDa subunit of the particulate methane monooxygenase in Methylococcus capsulatus (Bath) is a Cu(I) sponge.

    abstract::The crystal structure of the particulate methane monooxygenase (pMMO) from Methylococcus capsulatus (Bath) has been reported recently [Lieberman, R. L., and Rosenzweig, A. C. (2005) Crystal structure of a membrane-bound metalloenzyme that catalyses the biological oxidation of methane, Nature 434, 177-182]. Subsequent ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700883g

    authors: Yu SS,Ji CZ,Wu YP,Lee TL,Lai CH,Lin SC,Yang ZL,Wang VC,Chen KH,Chan SI

    更新日期:2007-12-04 00:00:00

  • Full-length human glutaminase in complex with an allosteric inhibitor.

    abstract::Glutaminase (GLS1/2) catalyzes the conversion of L-glutamine to L-glutamate and ammonia. The level of a splice variant of GLS1 (GAC) is elevated in certain cancers, and GAC is specifically inhibited by bis-2-(5-phenylacetimido-1,2,4,thiadiazol-2-yl)ethyl sulfide (BPTES). We report here the first full-length crystal st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201613d

    authors: DeLaBarre B,Gross S,Fang C,Gao Y,Jha A,Jiang F,Song J J,Wei W,Hurov JB

    更新日期:2011-12-20 00:00:00

  • The CD4 determinant for downregulation by HIV-1 Nef directly binds to Nef. Mapping of the Nef binding surface by NMR.

    abstract::Using heteronuclear NMR spectroscopy, we demonstrate that a 13-residue peptide (MS-QIKRLLSEKKT) from the cytoplasmic tail of CD4 binds to Nef protein. This part of CD4 is critical for downregulation of CD4 by HIV-1 Nef [Aiken et al. (1994) Cell 76, 853-864]. We show that a control peptide without the central dileucine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9611164

    authors: Grzesiek S,Stahl SJ,Wingfield PT,Bax A

    更新日期:1996-08-13 00:00:00

  • Mutations affecting the activity of toxic shock syndrome toxin-1.

    abstract::Toxic shock syndrome toxin-1 (TSST-1), the potent staphylococcal exoprotein linked to most cases of the toxic shock syndrome, is a V beta-restricted T-cell mitogen (a so-called "superantigen"). TSST-ovine (TSST-O) is a natural variant of TSST-1, and is produced by certain ovine mastitis-associated strains of Staphyloc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00209a016

    authors: Deresiewicz RL,Woo J,Chan M,Finberg RW,Kasper DL

    更新日期:1994-11-01 00:00:00