Abstract:
:The extraction of high-quality nucleic acid may be problematic in formalin-fixed tissues because of cross-linking between proteins and DNA. Old fixed tissue specimens do produce fragmented DNA (<1.2 kb), which is only used for PCR amplification. Here we show that high molecular weight DNA (>194 kb) can be successfully extracted from fixed tissue samples (16-70 years old) by gradual dehydration and critical point drying. The reliability of extracted DNA was measured by its ability to serve as a template for the amplification of mtDNA fragments (403 and 1198 bp) and an nDNA fragment (1844 bp). In addition, fingerprinting analysis was performed using DNA from fixed human tissue to ensure the ability of extracted DNA to hybridize with the DNA probe. DNA derived by this method can be subject to amplification, complete digestion by restriction endonuclease, and hybridization.
journal_name
Biotechniquesjournal_title
BioTechniquesauthors
Fang SG,Wan QH,Fujihara Ndoi
10.2144/02333rr03subject
Has Abstractpub_date
2002-09-01 00:00:00pages
604, 606, 608-10issue
3eissn
0736-6205issn
1940-9818journal_volume
33pub_type
杂志文章相关文献
BIOTECHNIQUES文献大全abstract::We present a simple method for sequential chemiluminescent detections of two different DNA loci on a single Southern blot. First, an enzyme-linked DNA probe for a unique sequence is detected with a horse-radish peroxidase (HRP) substrate followed by the detection of another enzyme-linked DNA probe for a different uniq...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/99264st08
更新日期:1999-04-01 00:00:00
abstract::Naturstoff reagent A (diphenylboric acid 2-aminoethyl ester [DPBA]) has been used historically in plant science to observe polyphenolic pigments, such as flavonoids, whose fluorescence requires enhancement to be visible by microscopy. Flavonoids are common dietary constituents and are the focus of considerable attenti...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/btn-2018-0084
更新日期:2019-02-01 00:00:00
abstract::Pairs of primers flanking known miniTn10 transposon insertion sites were used to confirm the presence of the transposon in DNA isolated from Legionella pneumophila mutants. It was expected that the polymerase chain reaction products derived from the mutant template would be larger than those from the wild-type (WT) te...
journal_title:BioTechniques
pub_type:
doi:10.2144/99273st04
更新日期:1999-09-01 00:00:00
abstract::The PCR method has proved to be an invaluable tool for the specific and sensitive detection of genetically modified material (e.g., Roundup Ready Soybean and Bt-176 "Maximizer" Maize) in foodstuffs. The first step in the procedure, namely the purification of nucleic acids from the sample, is often the deciding factor ...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/01312pf01
更新日期:2001-08-01 00:00:00
abstract::A nascent protein remains in a complex with its ribosome and mRNA if the stop codon is deleted from the mRNA. In the same manner, mRNA forms a stable complex with DNA if the transcription termination is blocked. In principle, if both mRNA translation and DNA transcription termination are prevented, the protein should ...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/00294st06
更新日期:2000-10-01 00:00:00
abstract::The reliability of the PCR technique used to type two human variable number tandem repeats, that is, 3' to apolipoprotein B gene and locus D17S30, was examined using DNA samples of mixed human and microbial origin. Mixtures of human and microbial DNA were amplified, choosing microbes found commonly in the vagina. Tota...
journal_title:BioTechniques
pub_type: 杂志文章
doi:
更新日期:1992-08-01 00:00:00
abstract::Characterization of the thermodynamics of binding interactions is important in improving our understanding of bimolecular recognition and forms an essential part of the rational drug design process. Isothermal titration calorimetry (ITC) is rapidly becoming established as the method of choice for undertaking such stud...
journal_title:BioTechniques
pub_type: 杂志文章,评审
doi:
更新日期:2001-07-01 00:00:00
abstract::14CO2 capture is commonly used to evaluate the cellular oxidation rate of respiratory substrates. A modification of the established 14CO2-capture method was developed that enables the use of cells in adherent culture and easy analysis of multiple samples under different culture conditions. The use of commercially avai...
journal_title:BioTechniques
pub_type:
doi:10.2144/98245st04
更新日期:1998-05-01 00:00:00
abstract::The technique described here is a fast and simple method of extracting chloroplast DNA (cpDNA). It overcomes the need for differential centrifugation using density gradients. The leaves do not have to be kept in the dark and lyophilized before extraction, but lyophilization is still possible. The chloroplasts are spec...
journal_title:BioTechniques
pub_type:
doi:10.2144/00281st07
更新日期:2000-01-01 00:00:00
abstract::Direct contact-based coculture of human dermal fibroblasts and epidermal keratinocytes has been a long-standing and challenging issue owing to different serum and growth factor requirements of the two cell types. Existing protocols employ high serum concentrations (up to 10% fetal bovine serum), complex feeder systems...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/btn-2020-0112
更新日期:2020-11-01 00:00:00
abstract::An easy, sensitive and direct fluorescent immunodetection method for proteins is described using the new fluorochrome PBXL-1 imaged with the FMBIO II Laser Scanning Imaging System. PBXL-1 is derived from a protein supra-molecular complex that contains a large number of chromophores. This complex, the phycobilisome, is...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/99263pf02
更新日期:1999-03-01 00:00:00
abstract::Data are presented illustrating the optimum concentration range of reverse transcription PCR-generated products under 500 bp for accurate base calling with direct automated DNA sequencing. A 357-bp fragment of the human estrogen receptor, which includes the DNA binding domain of the protein, was used as a representati...
journal_title:BioTechniques
pub_type:
doi:
更新日期:1994-09-01 00:00:00
abstract::Extracellular vesicles (EVs) are spherical membrane structures released by most cells. These highly conserved mediators of intercellular communication carry proteins, lipids, and nucleic acids, and transfer these cellular components between cells by different mechanisms, such as endocytosis, macropinocytosis, or fusio...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/000114371
更新日期:2016-01-01 00:00:00
abstract::Stable cell transfection is used for the expression of exogenous genes or cDNAs in eukaryotic cells. Selection of these transfectants requires a dominant selectable marker. A variety of such markers has been identified and is currently in use. However, many of these are not suitable for all cell types or require uniqu...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/03346st05
更新日期:2003-06-01 00:00:00
abstract::3D printed biomaterials are increasingly used in cell cultures and drug screens. Given the ease of creating artificial tissues, will this technique revolutionize biomedicine and organ implants in the future? ...
journal_title:BioTechniques
pub_type: 新闻
doi:10.2144/btn-2017-0113
更新日期:2018-03-01 00:00:00
abstract::Inverse PCR has been used for the recovery of genome regions flanking a known sequence, although its application to metagenome walking is limited due to inefficient amplification from low copy number fragments. Here we present an improved inverse PCR scheme that enables walking of rare fragments in environmental metag...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/000112210
更新日期:2006-08-01 00:00:00
abstract::Patents play an increasingly important role in the dissemination of information in many fast moving fields such as biotechnology and semiconductors. Quite a few new developments are introduced as patents, and only later, if at all, do they find their way into the scientific literature. In spite of this, patents lack w...
journal_title:BioTechniques
pub_type: 杂志文章
doi:
更新日期:1988-02-01 00:00:00
abstract::Reverse transcription PCR (RT-PCR) represents a sensitive and powerful tool for analyzing RNA. While it has tremendous potential for quantitative applications, a comprehensive knowledge of its technical aspects is required. Successful quantitative RT-PCR involves correction for experimental variations in individual RT...
journal_title:BioTechniques
pub_type: 杂志文章,评审
doi:10.2144/99261rv01
更新日期:1999-01-01 00:00:00
abstract::To gain insightful information about the mechanisms through which genes are activated and repressed requires gene reporter systems that are sensitive, robust, and cost-effective. Although numerous reporter gene technologies are commercially available, none are as sophisticated and user-friendly as beta-lactamase (BLA)...
journal_title:BioTechniques
pub_type: 杂志文章,评审
doi:10.2144/000112292
更新日期:2007-01-01 00:00:00
abstract::The well-characterized cell line Chinese hamster ovary (CHO) has been used to produce numerous biopharmaceuticals and is an important tool for basic research. However, introducing foreign DNA into specially modified CHO cells such as DG44 and Lec 3.2.8.1 can sometimes be an arduous process. Here we show that the Flp-i...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/btn-2018-0075
更新日期:2018-07-01 00:00:00
abstract::Multiplex Manager 1.0 is a user-friendly cross-platform program that designs efficient combinations of existing genetic marker loci into multiplex polymerase chain reactions and optimizes using prior marker information. The program has the flexibility to solve two design problems: combining all markers into the smalle...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/000113156
更新日期:2009-06-01 00:00:00
abstract::Transfection of suspension cells has proven to be very difficult using conventional methods. Here, we present a simple and time-saving new transfection protocol wherein cell culture plates coated with chicken egg white are seeded with suspension cells prior to transfection. Our results demonstrate that coupling egg wh...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/000113914
更新日期:2012-08-01 00:00:00
abstract::Display of functional antibody fragments on the surface of filamentous bacteriophages allows fast selection of specific phage antibodies against a variety of target antigens. However, enrichment of single chain variable fragment (scFv)-displaying phages is often hampered by the abundance of bacteriophages lacking anti...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/01302rr04
更新日期:2001-02-01 00:00:00
abstract::Ribosome profiling is a powerful tool for characterizing in vivo protein translation at the genome scale, with multiple applications ranging from detailed molecular mechanisms to systems-level predictive modeling. Though highly effective, this intricate technique has yet to become widely used in the microbial research...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/000114302
更新日期:2015-06-01 00:00:00
abstract::Next-generation sequencing (NGS) of multigene panels performed for genetic clinical diagnostics requires 100% coverage of all targeted genes. In the genetic diagnostics laboratory, coverage gaps are typically filled with Sanger sequencing after NGS data are collected and analyzed. Libraries prepared using the hybridiz...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/000114217
更新日期:2014-10-01 00:00:00
abstract::In the design of oligonucleotide sequences for targeting DNA or RNA sequences, it can be difficult to identify sequences that will hybridize only to the intended target. The term "sequence-specific" or "sequence-nonspecific" is often used to describe the interactions of an oligonucleotide with a mixture of DNA or RNA....
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/96206pf01
更新日期:1996-06-01 00:00:00
abstract::As a strategy to purify recombinant murine Interleukin (IL)-18, we cloned the mature coding region of this protein into the pFLAG-1 expression system. The intent was to use the FLAG peptide "tag" as an amino terminal addition to IL-18 so that purification of this fusion protein (FLAG-IL-18) on anti-FLAG antibody affin...
journal_title:BioTechniques
pub_type:
doi:
更新日期:1998-09-01 00:00:00
abstract::Impurity assays for recombinant protein therapeutics are essential to ensure batch-to-batch consistency and to meet the FDA's criteria for a well-characterized biopharmaceutical. For determination of residual host cell DNA, membrane hybridization assays utilizing radiolabeled DNA probes prepared from the host cell's g...
journal_title:BioTechniques
pub_type:
doi:10.2144/02325dd06
更新日期:2002-05-01 00:00:00
abstract::A pipeline has been created for the characterization of Arabidopsis thaliana mutants by generating flanking sequence tags (FSTs) and optimized for economic, high-throughput production. The GABI-Kat collection of T-DNA mutagenized A. thaliana plants was used as a source of independent transgenic lines. The pipeline inc...
journal_title:BioTechniques
pub_type: 杂志文章
doi:10.2144/03356st01
更新日期:2003-12-01 00:00:00
abstract::beta-galactosidase (beta-gal), the product of the E. coli LacZ gene, has been used extensively as a reporter in numerous systems. Until recently, the most commonly used method of detecting beta-gal reporter enzymatic activity was a colormetric assay based on the cleavage of the beta-gal substrate 5-bromo-4-chloro-3-in...
journal_title:BioTechniques
pub_type:
doi:10.2144/01304st03
更新日期:2001-04-01 00:00:00