Abstract:
:Defective interfering (DI) RNAs of Tomato bushy stunt virus (TBSV), a plus-sense RNA virus, comprise four conserved noncontiguous regions (I through IV) derived from the viral genome. Region III, a 70-nucleotide-long sequence corresponding to a genomic segment located 378 nucleotides upstream of the 3' terminus of the genome, has been found to enhance DI RNA accumulation by approximately 10-fold in an orientation-independent manner (D. Ray and K. A. White, Virology 256:162-171, 1999). In this study, a more detailed structure-function analysis of region III was conducted. RNA secondary-structure analyses indicated that region III contains stem-loop structures in both plus and minus strands. Through deletion analyses of a DI RNA, a primary determinant of region III activity was mapped to the 5'-proximal 35-nucleotide segment. Compensatory-type mutational analyses showed that a stem-loop structure in the minus strand of this subregion was required for enhanced DI RNA replication. The same stem-loop structure was also found to function in a position-independent manner in a DI RNA (albeit at reduced levels) and to be important for efficient accumulation within the context of the TBSV genome. Taken together, these observations suggest that the 5'-proximal segment of region III is a modular RNA replication element that functions primarily through the formation of an RNA hairpin structure in the minus strand.
journal_name
J Viroljournal_title
Journal of virologyauthors
Ray D,White KAdoi
10.1128/jvi.77.1.245-257.2003subject
Has Abstractpub_date
2003-01-01 00:00:00pages
245-57issue
1eissn
0022-538Xissn
1098-5514journal_volume
77pub_type
杂志文章abstract::In coliphage 186, 22 essential genes were defined by complementation studies with amber mutants. Eighteen genes were associated with phage morphogenesis: 11 with phage tail formation, and 7 with phage head formation. The remaining four genes are discussed in the accompanying paper (S. M. Hocking and J. B. Egan, J. Vir...
journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.44.3.1056-1067.1982
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pub_type: 杂志文章
doi:10.1128/JVI.65.8.4494-4497.1991
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doi:10.1128/jvi.78.6.2701-2710.2004
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pub_type: 杂志文章
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doi:10.1128/JVI.01425-06
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.26.2.299-305.1978
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pub_type: 杂志文章
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pub_type: 杂志文章
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pub_type: 杂志文章
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更新日期:2011-04-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.73.12.10061-10069.1999
更新日期:1999-12-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.66.6.3740-3748.1992
更新日期:1992-06-01 00:00:00
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pub_type: 杂志文章
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更新日期:2006-07-01 00:00:00
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pub_type: 杂志文章
doi:10.1128/JVI.80.10.5078-5081.2006
更新日期:2006-05-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
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更新日期:2020-02-14 00:00:00
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journal_title:Journal of virology
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journal_title:Journal of virology
pub_type: 杂志文章
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journal_title:Journal of virology
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更新日期:2004-05-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.72.12.10189-10196.1998
更新日期:1998-12-01 00:00:00
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pub_type: 杂志文章
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更新日期:2004-04-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.48.3.752-764.1983
更新日期:1983-12-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
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更新日期:2007-06-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
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更新日期:2010-11-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.50.1.60-65.1984
更新日期:1984-04-01 00:00:00
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journal_title:Journal of virology
pub_type: 杂志文章
doi:10.1128/JVI.5.2.99-108.1970
更新日期:1970-02-01 00:00:00
abstract::Theiler's virus infection of the central nervous system (CNS) induces an immune-mediated demyelinating disease in susceptible mouse strains, such as SJL/J, and serves as a relevant infectious model for human multiple sclerosis. It has been previously suggested that susceptible SJL/J mice do not mount an efficient cyto...
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pub_type: 杂志文章
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更新日期:2002-07-01 00:00:00