A transforming growth factor-alpha-Pseudomonas exotoxin hybrid protein undergoes pH-dependent conformational changes conducive to membrane interaction.

Abstract:

:TP40 is a chimeric protein containing transforming growth factor alpha (TGF-alpha) at the N-terminus and a derivative of a 40,000-Da segment (PE40 delta cys) of Pseudomonas exotoxin (PE). PE40 delta cys contains domains Ib, II, and III of PE in which the cysteines are mutated to alanines. The rationale for inclusion of TGF-alpha is to provide TP40 with selective targeting toward cells expressing the epidermal growth factor receptor (EGFr) on their surface [Pastan, I., & FitzGerald, D. (1989) J. Biol. Chem. 264, 15157-15160]. Translocation across endosomal membranes is thought to be a required step for cytotoxic activity of PE. This step is presumably facilitated by the low pH in endosomes which induces exposure of a hydrophobic surface of the protein, which in turn becomes available to interact with and translocate across the membrane. We have employed the hydrophobic fluorescence probe 2-p-toludinylnaphthalene-6-sulfonate (TNS) and the intrinsic tryptophan fluorophores of TP40 to investigate pH-induced changes in the tertiary structure of this protein. The pH dependence of TP40 interaction with liposomes also provided a model for studying protein-membrane interactions. TNS fluorescence was markedly enhanced in the presence of TP40 below pH 4 and to a lesser degree between pH 7 and 5. A progressive red shift of tryptophan fluorescence with decreasing pH was also seen with the approximate midpoint for this transition occurring around pH 3. Both observations suggest that acidic pH induces exposure of hydrophobic regions of TP40, making them accessible to solvent and TNS. No major alteration of the secondary structure was manifested in the far-UV CD spectrum of TP40 upon a reduction in pH from 7 to 2. Thus, the low-pH-induced structural change of TP40 appears to involve a subtle exposure of one or more hydrophobic surfaces without an extensive unfolding of the protein's secondary structure. In the presence of anionic liposomes, a low-pH-induced blue shift of the TP40 tryptophan fluorescence was observed, suggesting that interaction with liposomes also required the low-pH conformation of the protein. However, the midpoint of this fluorescence blue shift occurred at approximately pH 5, which is presumably closer to the physiological pH within endosomes. Neutral liposomes failed to induce these spectral changes in TP40, implying a lack of interaction with these lipids. At acidic pH values between 2 and 4, self-association of TP40 in solution was detected by equilibrium sedimentation and quasielastic light scattering measurements. This probably results from intermolecular interaction between exposed hydrophobic surfaces.(ABSTRACT TRUNCATED AT 400 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Sanyal G,Marquis-Omer D,Gress JO,Middaugh CR

doi

10.1021/bi00064a037

subject

Has Abstract

pub_date

1993-04-06 00:00:00

pages

3488-97

issue

13

eissn

0006-2960

issn

1520-4995

journal_volume

32

pub_type

杂志文章
  • Conformational modulation of troponin T by configuration of the NH2-terminal variable region and functional effects.

    abstract::Troponin T (TnT) is an essential element in the thin filament-based regulatory system of striated muscle. Alternative mRNA splicing generates multiple TnT isoforms with primary structural differences in the NH2-terminal region. The functional significance of this hypervariable NH2-terminal domain and the developmental...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9812322

    authors: Wang J,Jin JP

    更新日期:1998-10-13 00:00:00

  • 1H NMR dipolar echo decay spectroscopy: a sensitive probe of membrane structure.

    abstract::The structural and motional properties of membrane lipids in various physical states and macroscopic organizations are elucidated by 1H NMR dipolar echo decay spectroscopy (DECODE). Multilamellar lipid dispersions in the gel (L beta') and liquid-crystalline (L alpha) states and a nonbilayer, hexagonal (HII) phase are ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00488a027

    authors: Janes N,Rubin E,Taraschi TF

    更新日期:1990-09-11 00:00:00

  • Characterization of prostate-specific antigen proteolytic activity on its major physiological substrate, the sperm motility inhibitor precursor/semenogelin I.

    abstract::The protease prostate-specific antigen (PSA) is a marker widely used clinically for monitoring prostatic malignancies. Under normal conditions, this enzyme is mainly involved in the post ejaculation degradation of the major human seminal protein, the seminal plasma motility inhibitor precursor/semenogelin I (SPMIP/SgI...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9626158

    authors: Robert M,Gibbs BF,Jacobson E,Gagnon C

    更新日期:1997-04-01 00:00:00

  • Oxidation-reduction cycles of peroxiredoxin proteins and nontranscriptional aspects of timekeeping.

    abstract::The circadian clock allows organisms to accurately predict the earth's rotation and modify their behavior as a result. Genetic analyses in a variety of organisms have defined a mechanism based largely on gene expression feedback loops. However, as we delve more deeply into the mechanisms of circadian timekeeping, we a...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi5008386

    authors: Hoyle NP,O'Neill JS

    更新日期:2015-01-20 00:00:00

  • Deuterium NMR investigation of backbone dynamics in the synthetic oligonucleotide [d(CGCGAATTCGCG)]2.

    abstract::Backbone dynamics in the [5',5"-2H2]2'-deoxythymidine labeled duplex dodecamer [d-(CGCGAAT*T*CGC)]2 have been investigated by solid-state 2H NMR. Quadrupolar echo line shapes, spin-lattice relaxation, and quadrupolar echo decay times were obtained over hydration levels ranging from W = 0.0 to 25.2 (moles of H2O/mole o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00102a014

    authors: Alam TM,Orban J,Drobny GP

    更新日期:1991-09-24 00:00:00

  • The androgen receptor T877A mutant recruits LXXLL and FXXLF peptides differently than wild-type androgen receptor in a time-resolved fluorescence resonance energy transfer assay.

    abstract::The interactions of the ligand binding domain (LBD) of androgen receptor (AR) and the AR T877A mutant, found in prostate cancer, with peptides from coactivator and corepressor proteins or random phage display peptides were investigated using in vitro time-resolved fluorescence resonance energy transfer (TR-FRET). Inte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061321b

    authors: Ozers MS,Marks BD,Gowda K,Kupcho KR,Ervin KM,De Rosier T,Qadir N,Eliason HC,Riddle SM,Shekhani MS

    更新日期:2007-01-23 00:00:00

  • Limited proteolysis and biophysical characterization of the lipovitellin homology region in apolipoprotein B.

    abstract::Apolipoprotein B (apoB) is the essential nonexchangeable protein in chylomicrons and very low-density lipoprotein-derived lipoprotein particles, including low-density lipoprotein (LDL). ApoB has been a key target for cardiovascular research because of its essential role in the assembly, secretion, delivery, and recept...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048286y

    authors: Jiang ZG,Carraway M,McKnight CJ

    更新日期:2005-02-01 00:00:00

  • Characterization of the nuclease activity of Drosophila Rrp1 on phosphoglycolate- and phosphate-modified DNA 3'-termini.

    abstract::Drosophila Rrp1 includes a carboxy-terminal region homologous to Escherichia coli exonuclease III which is sufficient to repair both oxidative and alkylation damage to DNA. An apurinic/apyrimidinic endonuclease activity intrinsic to Rrp1 was characterized previously. In this work, the 3'-phosphodiesterase and 3'-phosp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00004a021

    authors: Sander M,Huang SM

    更新日期:1995-01-31 00:00:00

  • Characterization of the phosphoserine of pepsinogen using 31P nuclear magnetic resonance: corroboration of X-ray crystallographic results.

    abstract::The endogenous phosphoserine residue in porcine pepsinogen has been titrated with use of phosphorus-31 nuclear magnetic resonance (31P NMR). It has an observed pKa2 of 6.7 and a narrow line width (congruent to 10 Hz). The phosphate can be readily removed by an acid phosphatase from potato; however, it is resistant to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00369a049

    authors: Williams SP,Bridger WA,James MN

    更新日期:1986-10-21 00:00:00

  • Solubilization of the Semliki Forest virus membrane with sodium dodecyl sulfate.

    abstract::The dissociation of Semliki Forest virus induced by increasing concentrations of the anionic detergent sodium dodecyl sulfate was studied using density gradient centrifugation. Detectable binding to the virus started well below the critical micellar concentration of the detergent and increased thereafter with increase...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00680a005

    authors: Becker R,Helenius A,Simons K

    更新日期:1975-05-06 00:00:00

  • Light inhibition of bovine retinal rod guanylyl cyclase mediated by beta gamma-transducin.

    abstract::Photoreceptor guanylyl cyclase (ROS-GC), converting GTP into cGMP and pyrophosphate, is a key enzyme in the regulation of the visual transduction cascade. ROS-GC requires GC-activating proteins (GCAPs) and low free [Ca] for full activity. We found that when choline or potassium were the major cations present, light ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9825596

    authors: Wolbring G,Baehr W,Palczewski K,Schnetkamp PP

    更新日期:1999-03-02 00:00:00

  • Determination of the essentiality of the eight cysteine residues of the NrtA protein for high-affinity nitrate transport and the generation of a functional cysteine-less transporter.

    abstract::All eight cysteine residues, C90, C94, C143, C147, C219, C325, C367, and C431, present in transmembrane domains of the Aspergillus nidulans NrtA nitrate transporter protein were altered individually by site-specific mutagenesis. The results indicate that six residues, C90, C147, C219, C325, C367, and C431, are not req...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047732e

    authors: Unkles SE,Rouch DA,Wang Y,Siddiqi MY,Okamoto M,Stephenson RM,Kinghorn JR,Glass AD

    更新日期:2005-04-12 00:00:00

  • Correlation of photolabeling with occupancy of cAMP binding sites in the regulatory subunit of cAMP-dependent protein kinase I.

    abstract::Each regulatory subunit of the cAMP-dependent protein kinase contains two in-tandem cAMP binding sites. Photolabeling of holoenzyme I with 8-azidoadenosine 3',5'-monophosphate (8-N3-cAMP) leads to the covalent modification of two residues, Trp-260 and Tyr-371. In order to correlate photolabeling of these two residues ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a035

    authors: Bubis J,Taylor SS

    更新日期:1987-06-16 00:00:00

  • Cembranoid and long-chain alkanol sites on the nicotinic acetylcholine receptor and their allosteric interaction.

    abstract::Long-chain alkanols are general anesthetics which can also act as uncharged noncompetitive inhibitors of the peripheral nicotinic acetylcholine receptor (AChR) by binding to one or more specific sites on the AChR. Cembranoids are naturally occurring, uncharged noncompetitive inhibitors of peripheral and neuronal AChRs...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0112255

    authors: Pagán OR,Eterović VA,Garcia M,Vergne D,Basilio CM,Rodríguez AD,Hann RM

    更新日期:2001-09-18 00:00:00

  • Isolation and characterization of rat pancreatic elastase.

    abstract::Proelastase has been purified to homogeneity from rat pancreatic tissue by a combination of CM-Sephadex and immobilized protease inhibitor affinity resins. Trypsin activation yields an elastolytic enzyme that possesses a specificity toward small hydrophobic residues in synthetic amide substrates, similar to those of p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00285a008

    authors: Largman C

    更新日期:1983-08-02 00:00:00

  • Proteolysis of the cytochrome d complex with trypsin and chymotrypsin localizes a quinol oxidase domain.

    abstract::The cytochrome d complex is a two-subunit, membrane-bound terminal oxidase in the aerobic respiratory chain of Escherichia coli. The enzyme catalyzes the two-electron oxidation of ubiquinol and the four-electron reduction of oxygen to water. Previous work demonstrated that the site for ubiquinol oxidation was selectiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00228a007

    authors: Dueweke TJ,Gennis RB

    更新日期:1991-04-09 00:00:00

  • Structure, topology, and tilt of cell-signaling peptides containing nuclear localization sequences in membrane bilayers determined by solid-state NMR and molecular dynamics simulation studies.

    abstract::Cell-signaling peptides have been extensively used to transport functional molecules across the plasma membrane into living cells. These peptides consist of a hydrophobic sequence and a cationic nuclear localization sequence (NLS). It has been assumed that the hydrophobic region penetrates the hydrophobic lipid bilaye...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061895g

    authors: Ramamoorthy A,Kandasamy SK,Lee DK,Kidambi S,Larson RG

    更新日期:2007-01-30 00:00:00

  • Structural origins of the functional divergence of human insulin-like growth factor-I and insulin.

    abstract::Human insulin-like growth factors I and II (hIGF-I, hIGF-II) are potent stimulators of cell and growth processes. They display high sequence similarity to both the A and B chains of insulin but contain an additional connecting C-domain, which reflects their secretion without specific packaging or precursor conversion....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020084j

    authors: Brzozowski AM,Dodson EJ,Dodson GG,Murshudov GN,Verma C,Turkenburg JP,de Bree FM,Dauter Z

    更新日期:2002-07-30 00:00:00

  • Complex structures between the N-type calcium channel (CaV2.2) and ω-conotoxin GVIA predicted via molecular dynamics.

    abstract::The N-type voltage-gated Ca(2+) channel CaV2.2 is one of the important targets for pain management. ω-Conotoxins isolated from venoms of cone snails, which specifically inhibit CaV2.2, are promising scaffolds for novel analgesics. The inhibitory action of ω-conotoxins on CaV2.2 has been examined experimentally, but th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi4003327

    authors: Chen R,Chung SH

    更新日期:2013-05-28 00:00:00

  • Measuring the strength of side-chain hydrogen bonds in peptide helices: the Gln.Asp (i, i + 4) interaction.

    abstract::Whether hydrogen bonds between side chains are energetically significant in proteins and peptides has been controversial. A method is given here for measuring these interactions in peptide helices by comparing the helix contents of peptides with 1, 2, or 3 interactions. Results are given for the glutamine--aspartate (...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00041a001

    authors: Huyghues-Despointes BM,Klingler TM,Baldwin RL

    更新日期:1995-10-17 00:00:00

  • Modification of the conformational equilibria in the sodium and potassium dependent adenosinetriphosphatase with glutaraldehyde.

    abstract::Glutaraldehyde treatment of electroplax membrane preparations of Na,K-ATPase leads to irreversible changes in the enzymic behavior of the protein, which are not due to modification of the active site. When the glutaraldehyde treatment is carried out in a medium containing K+ and without Na+, the "K+-modified enzyme" s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00288a016

    authors: Chipman DM,Lev A

    更新日期:1983-09-13 00:00:00

  • Insights into Cu(I) exchange in HAH1 using quantum mechanical and molecular simulations.

    abstract::The human antioxidant protein, HAH1, is an important participant in a Cu(I) transport chain, delivering one Cu(I) ion to the Wilson's (WND) or Menkes disease protein (MNK). Full geometry optimizations and second-derivative calculations were performed on several binding site models using the B3LYP functional to derive ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7007195

    authors: Op't Holt BT,Merz KM Jr

    更新日期:2007-07-31 00:00:00

  • Primary quinone (QA) binding site of bacterial photosynthetic reaction centers: mutations at residue M265 probed by FTIR spectroscopy.

    abstract::In the primary quinone (Q(A)) binding site of Rb. sphaeroides reaction centers (RCs), isoleucine M265 is in extensive van der Waals contact with the ubiquinone headgroup. Substitution of threonine or serine for this residue (mutants M265IT and M265IS), but not valine (mutant M265IV), lowers the redox midpoint potentia...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026958j

    authors: Wells TA,Takahashi E,Wraight CA

    更新日期:2003-04-15 00:00:00

  • Mapping of factor XIII solvent accessibility as a function of activation state using chemical modification methods.

    abstract::The transglutaminase Factor XIII (FXIII) catalyzes the formation of covalent cross-links between adjacent noncovalently associated fibrin chains in blood coagulation. The resulting covalently cross-linked hard clot is much more mechanically stable and resistant to proteolytic degradation. FXIII is activated by the ser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049260+

    authors: Turner BT Jr,Sabo TM,Wilding D,Maurer MC

    更新日期:2004-08-03 00:00:00

  • Intrinsic uncoupling in proton-pumping cytochrome c oxidase: pH dependence of cytochrome c oxidation in coupled and uncoupled phospholipid vesicles.

    abstract::The pH dependence of the transient aerobic kinetics of cytochromes c and a has been investigated with cytochrome oxidase reconstituted in phospholipid vesicles in the absence and presence of an uncoupler and an ionophore. The cytochrome a reduction level immediately after the burst phase was 60-80% and was not signifi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a007

    authors: Maison-Peteri B,Malmström BG

    更新日期:1989-04-18 00:00:00

  • Domain characteristics of the carboxyl-terminal fragment 206-316 of thermolysin: immunochemical studies.

    abstract::The extent of nativeness of the stable conformation of the thermolysin fragment containing the carboxyl-terminal third of the protein (from residues 206 to 316, denoted fragment FII) was examined by its immunogenic and antigenic characteristics. Antisera elicited in rabbits by either intact thermolysin or fragment FII...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00538a007

    authors: Vita C,Fontana A,Chaiken IM

    更新日期:1982-04-27 00:00:00

  • Nucleotide Excision Repair and Impact of Site-Specific 5',8-Cyclopurine and Bulky DNA Lesions on the Physical Properties of Nucleosomes.

    abstract::The nonbulky 5',8-cyclopurine DNA lesions (cP) and the bulky, benzo[ a]pyrene diol epoxide-derived stereoisomeric cis- and trans- N2-guanine adducts (BPDE-dG) are good substrates of the human nucleotide excision repair (NER) mechanism. These DNA lesions were embedded at the In or Out rotational settings near the dyad ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01066

    authors: Shafirovich V,Kolbanovskiy M,Kropachev K,Liu Z,Cai Y,Terzidis MA,Masi A,Chatgilialoglu C,Amin S,Dadali A,Broyde S,Geacintov NE

    更新日期:2019-02-12 00:00:00

  • Role of local sequence in the folding of cellular retinoic abinding protein I: structural propensities of reverse turns.

    abstract::The experiments described here explore the role of local sequence in the folding of cellular retinoic acid binding protein I (CRABP I). This is a 136-residue, 10-stranded, antiparallel beta-barrel protein with seven beta-hairpins and is a member of the intracellular lipid binding protein (iLBP) family. The relative ro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034304k

    authors: Rotondi KS,Gierasch LM

    更新日期:2003-07-08 00:00:00

  • A novel delta(3),delta(2)-enoyl-CoA isomerase involved in the biosynthesis of the cyclohexanecarboxylic acid-derived moiety of the polyketide ansatrienin A.

    abstract::The side chain of the antifungal polyketide ansatrienin A produced by Streptomyces collinus contains a cyclohexanecarboxylic acid (CHC) derived moiety. This CHC in the coenzyme A activated form (CHC-CoA) is derived from shikimic acid via a pathway in which the penultimate step is the isomerization of 2-cyclohexenylcar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0005714

    authors: Patton SM,Cropp TA,Reynolds KA

    更新日期:2000-06-27 00:00:00

  • An extracellular loop region of the serotonin transporter may be involved in the translocation mechanism.

    abstract::The serotonin transporter (SERT) is a member of a highly homologous family of proteins responsible for the reuptake of biogenic amines from the synaptic cleft. We took advantage of native restriction sites in SERT to construct a chimeric transporter containing a small (34 amino acid) region of the norepinephrine trans...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962150l

    authors: Stephan MM,Chen MA,Penado KM,Rudnick G

    更新日期:1997-02-11 00:00:00