Probing conformational changes within LC2 domains of cardiac myosin.

Abstract:

:Nine monoclonal antibodies were used to test calcium and EDTA effects on the molecular conformation of ventricular VLC2 within myosin. Antibody epitopes were located in six domains of VLC2 using recombinant proteins. The apparent association constants of these antibodies were measured in solution in the presence of calcium or EDTA. An immunofluorescence study was performed to establish whether the observed effects would occur in more integrated systems, as compared to isolated proteins in solution. Our results showed (1) a slight effect of calcium on isolated VLC2, located in the aa 29-45 domain, (2) a clear-cut effect of calcium on VLC2 within myosin, only in the aa 45-59 domain, and (3) in the presence of EDTA, antibody affinities for VLC2 within myosin similar to the affinities for isolated VLC2. These results are discussed in terms of spatial arrangements and binding mechanisms between HC and VLC2. They suggest that there are two processes for stabilizing HC/VLC2 complex formation: one binding via calcium chelation and another involving hydrophobic interactions.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Eldin P,Cathiard AM,Anoal M,Léger J,Mornet D,Léger JJ,Cornillon B

doi

10.1021/bi00208a005

subject

Has Abstract

pub_date

1994-10-25 00:00:00

pages

12558-64

issue

42

eissn

0006-2960

issn

1520-4995

journal_volume

33

pub_type

杂志文章
  • Effect of erythrocyte transbilayer phospholipid distribution on fusion with vesicular stomatitis virus.

    abstract::To identify the specific component(s) in the target membrane involved in fusion of vesicular stomatitis virus (VSV), we examined the interaction of the virus with human erythrocyte membranes with asymmetric and symmetric bilayer distributions of phospholipids. Fusion was monitored spectrofluorometrically by the octade...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00469a005

    authors: Herrmann A,Clague MJ,Puri A,Morris SJ,Blumenthal R,Grimaldi S

    更新日期:1990-05-01 00:00:00

  • 2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription.

    abstract::The interaction of the TAR RNA element of human immunodeficiency virus type 1 (HIV-1) with a 2'-O-methyl analogue of an RNA hairpin aptamer previously identified by in vitro selection [Ducongé, F., and Toulmé, J. J. (1999) RNA 5, 1605-1614] was characterized by UV-monitored thermal denaturation and surface plasmon res...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025974d

    authors: Darfeuille F,Arzumanov A,Gait MJ,Di Primo C,Toulmé JJ

    更新日期:2002-10-08 00:00:00

  • Candida drug resistance protein 1, a major multidrug ATP binding cassette transporter of Candida albicans, translocates fluorescent phospholipids in a reconstituted system.

    abstract::Candida albicans drug resistance protein 1 (Cdr1p), an ATP-dependent drug efflux pump, contributes to multidrug resistance in Candida-infected immunocompromised patients. Previous cell-based assays suggested that Cdr1p also acts as a phospholipid translocator. To investigate this, we reconstituted purified Cdr1p into ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700453e

    authors: Shukla S,Rai V,Saini P,Banerjee D,Menon AK,Prasad R

    更新日期:2007-10-30 00:00:00

  • Orientation factor in steady-state and time-resolved resonance energy transfer measurements.

    abstract::Resonance energy transfer measurements provide a way to estimate distances between chromophores attached to different sites of macromolecules. There are two unknowns involved in resonance energy transfer measurements, the distance between two chromophores and their relative orientation. When static orientational disor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00149a027

    authors: Wu P,Brand L

    更新日期:1992-09-01 00:00:00

  • Menaquinone (vitamin K2) biosynthesis in Escherichia coli: synthesis of o-succinylbenzoate does not require the decarboxylase activity of the ketoglutarate dehydrogenase complex.

    abstract::The committed step in menaquinone biosynthesis is the formation of o-succinylbenzoate (OSB). It is presumed to require the reaction of a seven-carbon intermediate of the shikimate pathway with a succinic semialdehyde-thiamin pyrophosphate (TPP) anion, derived by decarboxylation of 2-ketoglutarate. The following eviden...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00354a017

    authors: Marley MG,Meganathan R,Bentley R

    更新日期:1986-03-25 00:00:00

  • Streptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent L-Arginine α-Deaminase, γ-Hydroxylase in the Enduracididine Biosynthetic Pathway.

    abstract::L-Enduracididine (L-End) is a nonproteinogenic amino acid found in a number of bioactive peptides, including the antibiotics teixobactin, enduracidin, and mannopeptimycin. The potent activity of these compounds against antibiotic-resistant pathogens like MRSA and their novel mode of action have garnered considerable i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01016

    authors: Han L,Schwabacher AW,Moran GR,Silvaggi NR

    更新日期:2015-12-01 00:00:00

  • Photooxidation of cytochrome b559 in oxygen-evolving photosystem II.

    abstract::Cytochrome b559 (cyt b559) is an intrinsic and essential component of the photosystem II (PSII) protein complex, but its function, stoichiometry, and electron-transfer kinetics in the physiological system are not well-defined. In this study, we have used flash-detection optical spectroscopy to measure the kinetics and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a025

    authors: Buser CA,Diner BA,Brudvig GW

    更新日期:1992-11-24 00:00:00

  • A mechanism for reducing entropic cost of induced fit in protein--RNA recognition.

    abstract::Induced fit has been postulated to be an important component of ligand interactions with proteins, including protein-DNA interactions. We imagined that the entropic cost of induced fit might be highly dependent on the local protein sequence context around critical contact residues. To investigate this question, we ana...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960256a

    authors: Ribas de Pouplana L,Auld DS,Kim S,Schimmel P

    更新日期:1996-06-25 00:00:00

  • 31P NMR studies of ATP synthesis and hydrolysis kinetics in the intact myocardium.

    abstract::The origin of the nuclear magnetic resonance (NMR)-measurable ATP in equilibrium Pi exchange and whether it can be used to determine net oxidative ATP synthesis rates in the intact myocardium were examined by detailed measurements of ATP in equilibrium Pi exchange rates in both directions as a function of the myocardi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00397a045

    authors: Kingsley-Hickman PB,Sako EY,Mohanakrishnan P,Robitaille PM,From AH,Foker JE,Uğurbil K

    更新日期:1987-11-17 00:00:00

  • Dynamics of ligand binding to alpha-chymotrypsin and to N-methyl-alpha-chymotrypsin.

    abstract::Ks values for binding of selected substrates, competitive inhibitors, and a noncompetitive inhibitor were found to be similar for alpha-chymotrypsin and N-methyl-alpha-chymotrypsin. The rates and steps of binding of a competitive inhibitor and a noncompetitive inhibitor were also found to be similar for alpha-chymotry...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00262a017

    authors: Maehler R,Whitaker JR

    更新日期:1982-09-14 00:00:00

  • Primary structure of human J chain: alignment of peptides from chemical and enzymatic hydrolyses.

    abstract::The primary structure of the J chain from a human Waldenströms IgM protein has been determined using a combination of automated and conventional Edman degradative procedures. Eighty-five percent of the sequence was established with peptides isolated from tryptic digests of carboxyamidomethylated and citraconylated J c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00635a002

    authors: Mole JE,Bhown AS,Bennett JC

    更新日期:1977-08-09 00:00:00

  • Membrane topology of human ASBT (SLC10A2) determined by dual label epitope insertion scanning mutagenesis. New evidence for seven transmembrane domains.

    abstract::The membrane topology of the human apical sodium-dependent bile acid transporter (hASBT) remains unresolved. Whereas N-glycosylation analysis favors a 7 transmembrane (TM) model, membrane insertion scanning supports a 9TM topology. In order to resolve this controversy, we used dual label epitope insertion to systemati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052202j

    authors: Banerjee A,Swaan PW

    更新日期:2006-01-24 00:00:00

  • Interaction of alpha-dansylated peptide inhibitors with porcine pepsin: detection of complex formation by fluorescence energy transfer and chromatography and evidence for a two-step binding scheme.

    abstract::Peptide inhibitors, specifically labeled at the alpha-amino terminus by dansylation, have been prepared by utilizing solid-phase peptide synthesis. Changes in fluorescence have been observed upon mixing these peptides with porcine pepsin that can be attributed to the formation of at least two complexes. Energy transfe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00528a023

    authors: Dunn BM,Pham C,Raney L,Abayasekara D,Gillespie W,Hsu A

    更新日期:1981-12-08 00:00:00

  • Nucleotide- and substrate-induced conformational transitions in the CBS domain-containing pyrophosphatase of Moorella thermoacetica.

    abstract::In contrast to all other known pyrophosphatases, Moorella thermoacetica pyrophosphatase (mtCBS-PPase) contains nucleotide-binding CBS domains and is thus strongly regulated by adenine nucleotides. Stopped-flow measurements using a fluorescent AMP analogue, 2'(3')-O-(N-methylanthranoyl)-AMP (Mant-AMP), reveal that nucl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9019737

    authors: Jämsen J,Baykov AA,Lahti R

    更新日期:2010-02-09 00:00:00

  • Two homologues encoding human UDP-glucose:glycoprotein glucosyltransferase differ in mRNA expression and enzymatic activity.

    abstract::UDP-glucose:glycoprotein glucosyltransferase (UGT) is a soluble protein of the endoplasmic reticulum (ER) that operates as a gatekeeper for quality control by preventing transport of improperly folded glycoproteins out of the ER. We report the isolation of two cDNAs encoding human UDP-glucose:glycoprotein glucosyltran...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9916473

    authors: Arnold SM,Fessler LI,Fessler JH,Kaufman RJ

    更新日期:2000-03-07 00:00:00

  • Porcine proparathyroid hormone. Identification, biosynthesis, and partial amino acid sequence.

    abstract::Porcine parathyroid gland slices were incubated with 3H-labeled amino acids in order to label tissue proteins. After incubation a crude hormonal extract was prepared and analyzed by chromatography on carboxymethylcellulose. Among the three radioactive peaks which were detected in the eluate, two were identified as par...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00687a018

    authors: Chu LK,Huang WY,Littledike ET,Hamilton JW,Cohn DV

    更新日期:1975-08-12 00:00:00

  • Conformational characteristics of luliberin. Luminescence properties at liquid-nitrogen temperature.

    abstract::The luminescence properties (fluorescence and phosphorescence) of luliberin have been investigated at liquid-nitrogen temperature (77 K) in 50% ethylene glycolaqueous buffer at various pH's. Calculation of the energy-transfer efficiency between Trp and Tyr residues leads to an evaluation of the distance separating the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00671a009

    authors: Marche P,Montenay-Garestier T,Fromageot P,Hélène C

    更新日期:1976-12-28 00:00:00

  • Association of melittin with the isolated myosin light chains.

    abstract::Melittin is a 26-residue peptide which undergoes high-affinity calcium-dependent binding by calmodulin [Barnette, M.S., Daly, R., & Weiss, B. (1983) Biochem. Pharmacol. 32, 2929; Comte, M., Maulet, Y., & Cox, J.A. (1983) Biochem. J. 209, 269; Anderson, S.R., & Malencik, D.A. (1986) Calcium Cell Funct. 6, 1]. The resul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00406a021

    authors: Malencik DA,Anderson SR

    更新日期:1988-03-22 00:00:00

  • A protein arginine N-methyltransferase 1 (PRMT1) and 2 heteromeric interaction increases PRMT1 enzymatic activity.

    abstract::Protein arginine N-methyltransferases (PRMTs) act in signaling pathways and gene expression by methylating arginine residues within target proteins. PRMT1 is responsible for most cellular arginine methylation activity and can work independently or in collaboration with other PRMTs. In this study, we demonstrate a dire...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200644c

    authors: Pak ML,Lakowski TM,Thomas D,Vhuiyan MI,Hüsecken K,Frankel A

    更新日期:2011-09-27 00:00:00

  • Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1.

    abstract::FLI1 (Friend leukemia integration 1) is a metazoan transcription factor that is upregulated in a number of cancers. In addition, rearrangements of the fli1 gene cause sarcomas, leukemias, and lymphomas. These rearrangements encode oncogenic transcription factors, in which the DNA binding domain (DBD or ETS domain) of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01121

    authors: Hou C,Tsodikov OV

    更新日期:2015-12-22 00:00:00

  • DNA binding of methyl-CpG-binding protein MeCP2 in human MCF7 cells.

    abstract::MeCP2 has been identified as a chromatin-associated protein that recognizes MAR elements as well as methyl-CpGs. To characterize target sequences of MeCP2 in human cells, we employed two complementary methods. First, by use of a preparative chromatin immunoprecipitation protocol, we created from MCF7 cells a library e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0359271

    authors: Koch C,Strätling WH

    更新日期:2004-05-04 00:00:00

  • Probing the acyl-binding pocket of aminoacylase-1.

    abstract::The aminoacylase-1/metallopeptidase 20 (Acy1/M20) family features several l-aminoacylases useful in biocatalysis. Mammalian Acy1, in particular, has been applied in racemic resolution and reverse hydrolysis. Despite recent advances in our understanding of the active site architecture and functioning, determinants of A...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi702156h

    authors: Lindner HA,Alary A,Wilke M,Sulea T

    更新日期:2008-04-08 00:00:00

  • Shape and volume of fragments Fab' and (Fab')2 of anti-poly(D-alanyl) antibodies in the presence and absence of tetra-D-alanine as determined by small-angle x-ray scattering.

    abstract::The conformation of two fragments derived from anti-poly(D-alanyl) antibodies, the divalent fragment (Fab')2 and the monovalent fragment Fab', was studied by small-angle X-ray scattering before and after interaction with the tetra-D-alanine amide hapten. More than 90% of the combining sites were occupied by the hapten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00677a035

    authors: Pilz I,Kratky O,Licht A,Sela M

    更新日期:1975-03-25 00:00:00

  • Structural changes in the lumirhodopsin-to-metarhodopsin I conversion of air-dried bovine rhodopsin.

    abstract::Structural changes during the photochemical reactions of unhydrated air-dried films of bovine rhodopsin in rod outer segments were examined by visible and Fourier transform infrared (FTIR) spectroscopy at 200, 240, and 280 K. These films exhibited conversion from a lumirhodopsin state to a metarhodopsin I state with a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00051a025

    authors: Nishimura S,Sasaki J,Kandori H,Lugtenburg J,Maeda A

    更新日期:1995-12-26 00:00:00

  • Role of the conserved phenylalanine 181 of NADPH-cytochrome P450 oxidoreductase in FMN binding and catalytic activity.

    abstract::NADPH-cytochrome P450 oxidoreductase (P450 reductase, EC 1.6.2.4) is an essential component of the P450 monooxygenase complex and binds FMN, FAD, and NADPH cofactors. Residues Tyr140 and Tyr178 are known to be involved in FMN binding. A third aromatic side chain, Phe181, is also located in the proximity of the FMN rin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011147l

    authors: Paine MJ,Ayivor S,Munro A,Tsan P,Lian LY,Roberts GC,Wolf CR

    更新日期:2001-11-13 00:00:00

  • Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase.

    abstract::The Haemophilus influenzae diaminopimelate epimerase was cloned, expressed, purified, and crystallized in the C2221 space group (a = 102.1 A, b = 115.4 A, c = 66.3 A, alpha = beta = gamma = 90 degrees). The three-dimensional structure was solved to 2.7 A using a single Pt derivative and the Se-Met-substituted enzyme t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982138o

    authors: Cirilli M,Zheng R,Scapin G,Blanchard JS

    更新日期:1998-11-24 00:00:00

  • Unique chicken tandem-repeat-type galectin: implications of alternative splicing and a distinct expression profile compared to those of the three proto-type proteins.

    abstract::Animal galectins (lectins with specificity for beta-galactosides of glycan chains) are potent effectors in diverse aspects of cell sociology. Gene divergence has led to different groups and a marked interspecies variability in the number of members per group. Since the suitability of a model for studying functionality...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900083q

    authors: Kaltner H,Solís D,André S,Lensch M,Manning JC,Mürnseer M,Sáiz JL,Gabius HJ

    更新日期:2009-05-26 00:00:00

  • Formation of an 8-hydroxyguanine moiety in deoxyribonucleic acid on gamma-irradiation in aqueous solution.

    abstract::Isolation and characterization of a novel radiation-induced product, i.e., the 8-hydroxyguanine residue, produced in deoxyribonucleic acid (DNA), 2'-deoxyguanosine, and 2'-deoxyguanosine 5'-monophosphate by gamma-irradiation in aqueous solution, are described. For this purpose, gamma-irradiated DNA was first hydrolyze...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00337a032

    authors: Dizdaroglu M

    更新日期:1985-07-30 00:00:00

  • Functional annotation and three-dimensional structure of an incorrectly annotated dihydroorotase from cog3964 in the amidohydrolase superfamily.

    abstract::The substrate specificities of two incorrectly annotated enzymes belonging to cog3964 from the amidohydrolase superfamily were determined. This group of enzymes are currently misannotated as either dihydroorotases or adenine deaminases. Atu3266 from Agrobacterium tumefaciens C58 and Oant2987 from Ochrobactrum anthropi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301483z

    authors: Ornelas A,Korczynska M,Ragumani S,Kumaran D,Narindoshvili T,Shoichet BK,Swaminathan S,Raushel FM

    更新日期:2013-01-08 00:00:00

  • Polymer models of protein stability, folding, and interactions.

    abstract::The unfolded state and flexible linkers in the folded structure play essential roles in protein stability and folding and protein-protein interactions. Intrinsic to these roles is the fact that unfolded proteins and flexible linkers sample many different conformations. Polymer models may capture this and complement ex...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036269n

    authors: Zhou HX

    更新日期:2004-03-02 00:00:00