Photooxidation of cytochrome b559 in oxygen-evolving photosystem II.

Abstract:

:Cytochrome b559 (cyt b559) is an intrinsic and essential component of the photosystem II (PSII) protein complex, but its function, stoichiometry, and electron-transfer kinetics in the physiological system are not well-defined. In this study, we have used flash-detection optical spectroscopy to measure the kinetics and yields of photooxidation and dark reduction of cyt b559 in untreated, O2-evolving PSII-enriched membranes at room temperature. The dark redox states of cyt b559 and the primary electron acceptor, QA, were determined over the pH range 5.0-8.5. Both the fraction of dark-oxidized cyt b559 and dark-reduced QA increased with increasing acidity. Consistent with these results, an acid-induced drop in pH from 8.5 to 4.9 in a dark-adapted sample caused the oxidation of cyt b559, indicating a shift in the redox state during the dark reequilibration. As expected from the dark redox state of cyt b559, the rate and extent of photooxidation of cyt b559 during continuous illumination decreased toward more acidic pH values. After a single, saturating flash, the rate of photooxidation of cyt b559 was of the same order of magnitude as the rate of S2QA- charge recombination. In untreated PSII samples at pH 8.0 with 42% of cyt b559 oxidized and 15% of QA reduced in the dark, 4.7% of one copy of cyt b559 was photooxidized after one flash with a t1/2 of 540 +/- 90 ms. On the basis of our previous work [Buser, C. A., Thompson, L. K., Diner, B. A., & Brudvig, G. W (1990) Biochemistry 29, 8977] and the data presented here, we conclude that Sn+1, YZ., and P680+ are in redox equilibrium and cyt b559 (and YD) are oxidized via P680+. After a period of illumination sufficient to fully reduce the plastoquinone pool, we also observed the pH-dependent dark reduction of photooxidized cyt b559, where the rate of reduction decreased with decreasing pH and was not observed at pH < 6.4. To determine the direct source of reductant to oxidized cyt b559, we studied the dark reduction of cyt b559 and the reduction of the PQ pool as a function of 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU) concentration. We find that DCMU inhibits the reduction of cyt b559 under conditions where the plastoquinone pool and QA are reduced. We conclude that QB-. (H+) or QBH2 is the most likely source of the electron required for the reduction of oxidized cyt b559.(ABSTRACT TRUNCATED AT 400 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Buser CA,Diner BA,Brudvig GW

doi

10.1021/bi00161a025

subject

Has Abstract

pub_date

1992-11-24 00:00:00

pages

11449-59

issue

46

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Examination of the solvent perturbation technique as a method to identify enzyme catalytic groups.

    abstract::The present study was undertaken for the purpose of evaluating the solvent perturbation technique as a method to identify enzyme catalytic residues. For establishment of expected directions and sizes of pKa perturbations for different types of acids in different classes of solvents, a study of the pKa of a series of a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00287a013

    authors: Grace S,Dunaway-Mariano D

    更新日期:1983-08-30 00:00:00

  • Kinetics of long-chain (sphingoid) base biosynthesis in intact LM cells: effects of varying the extracellular concentrations of serine and fatty acid precursors of this pathway.

    abstract::Serine palmitoyltransferase (EC 2.3.1.50) catalyzes the condensation of L-serine and palmitoyl-CoA to yield 3-ketosphinganine in the first unique reaction of long-chain (sphingoid) base biosynthesis. The kinetic effects of changing the extracellular concentrations of the precursors for this pathway were studied with L...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00401a051

    authors: Merrill AH Jr,Wang E,Mullins RE

    更新日期:1988-01-12 00:00:00

  • Substrate specificity, metal binding properties, and spectroscopic characterization of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae.

    abstract::The catalytic and structural properties of divalent metal ion cofactor binding sites in the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) from Haemophilus influenzae were investigated. Co(II)-substituted DapE enzyme was 25% more active than the Zn(II)-loaded form of the enzyme. Interestingly, Mn...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034845+

    authors: Bienvenue DL,Gilner DM,Davis RS,Bennett B,Holz RC

    更新日期:2003-09-16 00:00:00

  • The tyrosine photophysics of a primase-derived peptide are sensitive to the peptide's zinc-bound state: proof that the bacterial primase hypothetical zinc finger sequence binds zinc.

    abstract::A 35-amino acid peptide corresponding to the putative "zinc finger" sequence of primase was prepared to study its zinc binding properties. When zinc was added to the peptide, it was found that the fluorescence quantum yield of the single tyrosine increased by 46% and the average lifetime by 34%. The binding stoichiome...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9612778

    authors: Griep MA,Adkins BJ,Hromas D,Johnson S,Miller J

    更新日期:1997-01-21 00:00:00

  • Comparisons of pressure and temperature activation parameters for amide hydrogen exchange in T4 lysozyme.

    abstract::Activation enthalpies and entropies are reported for proton-deuteron exchange at 42 amide sites in T4 lysozyme and compared with activation volumes for the same residues obtained earlier [Hitchens, T. K., and Bryant, R. G. (1998) Biochemistry 37, 5878-5887]. There is no correlation found between activation volume and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991718y

    authors: Dixon ME,Hitchens TK,Bryant RG

    更新日期:2000-01-11 00:00:00

  • SNX-325, a novel calcium antagonist from the spider Segestria florentina.

    abstract::A novel selective calcium channel antagonist peptide, SNX-325, has been isolated from the venom of the spider Segestria florentina. The peptide was isolated using as bioassays the displacement of radioiodinated omega-conopeptide SNX-230 (MVIIC) from rat brain synaptosomal membranes, as well as the inhibition of the ba...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00026a015

    authors: Newcomb R,Palma A,Fox J,Gaur S,Lau K,Chung D,Cong R,Bell JR,Horne B,Nadasdi L

    更新日期:1995-07-04 00:00:00

  • Isolation of brain endopeptidases: influence of size and sequence of substrates structurally related to bradykinin.

    abstract::Two thiol-activated endopeptidases with pH optima near pH 7.5 were isolated from the supernatant fraction of rabbit brain homogenates by DEAE-cellulose chromatography, gel filtration and isoelectrofocusing. Peptide bond hydrolysis was measured quantitatively by ion-exchange chromatography with an amino acid analyzer. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00654a026

    authors: Oliveira EB,Martins AR,Camargo AC

    更新日期:1976-05-04 00:00:00

  • Translesional synthesis on DNA templates containing an estrogen quinone-derived adduct: N2-(2-hydroxyestron-6-yl)-2'-deoxyguanosine and N6-(2-hydroxyestron-6-yl)-2'-deoxyadenosine.

    abstract::Miscoding properties induced by estrogen quinone-derived DNA adducts were analyzed using an in vitro experimental system to quantify base substitutions and deletions. Site-specifically modified oligodeoxynucleotides containing a single N2-(2-hydroxyestron-6-yl)-2'-deoxyguanosine (2-OHE1-N2-dG) or N6-(2-hydroxyestron-6...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981235e

    authors: Terashima I,Suzuki N,Dasaradhi L,Tan CK,Downey KM,Shibutani S

    更新日期:1998-09-29 00:00:00

  • How Do Branched Detergents Stabilize GPCRs in Micelles?

    abstract::The structural and functional properties of G protein-coupled receptors (GPCRs) are often studied in a detergent micellar environment, but many GPCRs tend to denature or aggregate in short alkyl chain detergents. In our previous work [Lee, S., et al. (2016) J. Am. Chem. Soc.138, 15425-15433], we showed that GPCRs in a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00183

    authors: Lee S,Ghosh S,Jana S,Robertson N,Tate CG,Vaidehi N

    更新日期:2020-06-16 00:00:00

  • Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction.

    abstract::Proline utilization A (PutA) from Escherichia coli is a multifunctional flavoprotein that is both a transcriptional repressor of the proline utilization (put) genes and a membrane-associated enzyme which catalyzes the 4-electron oxidation of proline to glutamate. Previously, proline was shown to induce PutA-membrane b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048596g

    authors: Zhang W,Zhou Y,Becker DF

    更新日期:2004-10-19 00:00:00

  • Tryptophan 500 and arginine 707 define product and substrate active site binding in soybean lipoxygenase-1.

    abstract::There is much debate whether the fatty acid substrate of lipoxygenase binds "carboxylate-end first" or "methyl-end first" in the active site of soybean lipoxygenase-1 (sLO-1). To address this issue, we investigated the sLO-1 mutants Trp500Leu, Trp500Phe, Lys260Leu, and Arg707Leu with steady-state and stopped-flow kine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0489098

    authors: Ruddat VC,Mogul R,Chorny I,Chen C,Perrin N,Whitman S,Kenyon V,Jacobson MP,Bernasconi CF,Holman TR

    更新日期:2004-10-19 00:00:00

  • Kinetics of ganglioside transfer between liposomal and synaptosomal membranes.

    abstract::The transfer of ganglioside GM1 from micelles to membranes and between different membrane populations has been examined by using a pyrene fatty acid derivative of the ganglioside. The transfer of gangliosides from micelles to membranes depends on the physical state as well as the molecular composition of the acceptor ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00375a032

    authors: Masserini M,Freire E

    更新日期:1987-01-13 00:00:00

  • Site specific combinations of stabilizing and destabilizing amino acid replacements in yeast cytochrome c: in vivo and in vitro effects.

    abstract::Oligonucleotide-directed mutagenesis in vivo was used to create destabilizing site specific changes at position 6 in iso-1-cytochrome c in Saccharomyces cerevisiae. These changes were made in combination with the stabilizing N52I substitution. The resulting proteins showed that a variety of forces and interactions are...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00021a023

    authors: Linske-O'Connell LI,Sherman F,McLendon G

    更新日期:1995-05-30 00:00:00

  • Effects of the A.T/T.A degeneracy of pyrrole--imidazole polyamide recognition in the minor groove of DNA.

    abstract::Pairing rules have been developed to predict the sequence specificity of minor groove binding polyamides containing pyrrole (Py) and imidazole (Im) amino acids. An Im/Py pair distinguishes G.C from C.G and both of these from A.T/T.A base pairs. A Py/Py pair appears not to distinguish A.T from T.A base pairs. To test t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960744i

    authors: White S,Baird EE,Dervan PB

    更新日期:1996-09-24 00:00:00

  • Thermal behavior of synthetic sphingomyelin-cholesterol dispersions.

    abstract::The thermotropic behavior of aqueous dispersions of palmitoylsphingomyelin-cholesterol and lignoceryl-sphingomyelin-cholesterol mixtures has been examined by high-sensitivity differential scanning calorimetry. When less than 25 mol % cholesterol is mixed with either sphingomyelin, the calorimetric endotherm is compose...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00577a042

    authors: Estep TN,Mountcastle DB,Barenholz Y,Biltonen RL,Thompson TE

    更新日期:1979-05-15 00:00:00

  • Structurally diverse chitolipooligosaccharide nod factors accumulate primarily in membranes of wild type Rhizobium leguminosarum biovar trifolii.

    abstract::The general view on Rhizobium chitolipooligosaccharides (CLOS) is that they are made in very low levels as diffusible molecules and are primarily secreted by the bacteria into the extracellular milieu where they interact with the host. However, the structural and predicted physicochemical properties of these amphiphil...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00011a041

    authors: Orgambide GG,Lee J,Hollingsworth RI,Dazzo FB

    更新日期:1995-03-21 00:00:00

  • Human brain and placental choline acetyltransferase: purification and properties.

    abstract::Choline acetyltransferase (EC 2.3.1.6) catalyzes the biosynthesis of acetylcholine according to the following chemical equation: acetyl-CoA + choline in equilibrium to acetylcholine + CoA. In addition to nervous tissue, primate placenta is the only other animal source which contains appreciable acetylcholine and its b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00694a013

    authors: Roskoski R Jr,Lim CT,Roskoski LM

    更新日期:1975-11-18 00:00:00

  • Evidence for a recombination-independent pathway for the repair of DNA interstrand cross-links based on a site-specific study with nitrogen mustard.

    abstract::DNA-DNA interstrand cross-links are thought to be important for the cytotoxicity of many chemotherapeutic agents. To study this more definitively, adduct site-specific methods are used to construct a plasmid with a single nitrogen mustard interstrand cross-link (inter-HN2-pTZSV28). Replication efficiency (RE = [coloni...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962778w

    authors: Berardini M,Mackay W,Loechler EL

    更新日期:1997-03-25 00:00:00

  • A new inhibitor of coupled oxidative phosphorylation, 5-hydroxynaphthalenedicarboxylic anhydride, a derivative of a carcinogenic polynuclear hydrocarbon.

    abstract::5-Hydroxy-1,2-naphthalenedicarboxylic anhydride is closely related to its precursor dibasic acid which is a metabolite of the carcinogenic polynuclear hydrocarbon dibenz[a,h]anthracene. The anhydride inhibited respiration of coupled mitochondria. This inhibition was relieved by 2,4-dinitrophenol. Several mitochondrial...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00695a022

    authors: Hadler HI,Demetriou JM

    更新日期:1975-12-02 00:00:00

  • Dilatometric study of binary mixtures of phosphatidylcholines.

    abstract::Volumes of lipid dispersions as a function of temperature have been measured for two different kinds of binary mixtures of lecithins, (1) DMPC and DSPC and (2) DMPC and DC20PC. Emphasis was placed on DMPC-rich compositions so as to resolve ambiguities regarding solid-phase immiscibility in DMPC-DSPC mixtures. Special ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00586a032

    authors: Wilkinson DA,Nagle JF

    更新日期:1979-09-18 00:00:00

  • Primary structure of human J chain: alignment of peptides from chemical and enzymatic hydrolyses.

    abstract::The primary structure of the J chain from a human Waldenströms IgM protein has been determined using a combination of automated and conventional Edman degradative procedures. Eighty-five percent of the sequence was established with peptides isolated from tryptic digests of carboxyamidomethylated and citraconylated J c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00635a002

    authors: Mole JE,Bhown AS,Bennett JC

    更新日期:1977-08-09 00:00:00

  • Rate-determining folding and association reactions on the reconstitution pathway of porcine skeletal muscle lactic dehydrogenase after denaturation by guanidine hydrochloride.

    abstract::Reactivation of tetrameric porcine skeletal muscle lactic dehydrogenase after dissociation and extensive unfolding of the monomers by 6 M guanidine hydrochloride (Gdn . HCl) is characterized by sigmoidal kinetics, indicating a complex mechanism involving rate-limiting folding and association steps. For analysis of the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00260a007

    authors: Zettlmeissl G,Rudolph R,Jaenicke R

    更新日期:1982-08-17 00:00:00

  • Light-induced global conformational change of photoactive yellow protein in solution.

    abstract::The light-induced global conformational change of photoactive yellow protein was directly observed by small-angle X-ray scattering (SAXS). The N-terminal 6, 15, or 23 amino acid residues were enzymatically truncated (T6, T15, or T23, respectively), and their near-UV intermediates were accumulated under continuous illu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264768

    authors: Imamoto Y,Kamikubo H,Harigai M,Shimizu N,Kataoka M

    更新日期:2002-11-19 00:00:00

  • Structural basis for the quinone reduction in the bc1 complex: a comparative analysis of crystal structures of mitochondrial cytochrome bc1 with bound substrate and inhibitors at the Qi site.

    abstract::Cytochrome bc(1) is an integral membrane protein complex essential to cellular respiration and photosynthesis. The Q cycle reaction mechanism of bc(1) postulates a separated quinone reduction (Q(i)) and quinol oxidation (Q(o)) site. In a complete catalytic cycle, a quinone molecule at the Q(i) site receives two electr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0341814

    authors: Gao X,Wen X,Esser L,Quinn B,Yu L,Yu CA,Xia D

    更新日期:2003-08-05 00:00:00

  • LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA.

    abstract::Locked nucleic acid (LNA) is a nucleic acid analogue containing one or more LNA nucleotide monomers with a bicyclic furanose unit locked in an RNA mimicking sugar conformation. LNA oligonucleotides display unprecedented hybridization affinity toward complementary single-stranded RNA and complementary single- or double...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0485732

    authors: Vester B,Wengel J

    更新日期:2004-10-26 00:00:00

  • Threonine 41 in beta-catenin serves as a key phosphorylation relay residue in beta-catenin degradation.

    abstract::Beta-catenin phosphorylation at serine 45 (Ser45), threonine 41 (Thr41), Ser37, and Ser33 is critical for beta-catenin degradation, and regulation of beta-catenin phosphorylation is a central part of the canonical Wnt signaling pathway. Beta-catenin mutations at Ser45, Thr41, Ser37, and Ser33 perturb beta-catenin degr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0601149

    authors: Wu G,He X

    更新日期:2006-04-25 00:00:00

  • Conformational studies of aqueous melittin: thermodynamic parameters of the monomer-tetramer self-association reaction.

    abstract::The self-association reaction in which four melittin molecules associate to form an aqueously soluble tetramer was studied by fluorescent spectroscopy. At 23 degrees C, pH 7.15, gamma/2 0.50, the dissociation constant, Kd, is 3.20 x 10(-16) M3. At 23 degrees C, gamma/2 0.60, melittin has an amino acyl group with a pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00272a026

    authors: Quay SC,Condie CC

    更新日期:1983-02-01 00:00:00

  • Holo Structure and Steady State Kinetics of the Thiazolinyl Imine Reductases for Siderophore Biosynthesis.

    abstract::Thiazolinyl imine reductases catalyze the NADPH-dependent reduction of a thiazoline to a thiazolidine, a required step in the formation of the siderophores yersiniabactin (Yersinia spp.) and pyochelin (Pseudomonas aeruginosa). These stand-alone nonribosomal peptide tailoring domains are structural homologues of sugar ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00735

    authors: Meneely KM,Ronnebaum TA,Riley AP,Prisinzano TE,Lamb AL

    更新日期:2016-09-27 00:00:00

  • Characterization of the ATPase activity of purified Chinese hamster P-glycoprotein.

    abstract::A simple and rapid procedure is described for purification of P-glycoprotein (Pgp) from a multidrug-resistant Chinese hamster ovary cell line (CR1R12) in which the plasma membranes are highly enriched in Pgp (Al-Shawi, M.K., Senior A.E. (1993) J. Biol. Chem, 268, 4197-4206). The procedure consisted of octylglucoside s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00189a008

    authors: Urbatsch IL,al-Shawi MK,Senior AE

    更新日期:1994-06-14 00:00:00

  • Model for general acid-base catalysis by the hammerhead ribozyme: pH-activity relationships of G8 and G12 variants at the putative active site.

    abstract::We have used nucleobase substitution and kinetic analysis to test the hypothesis that hammerhead catalysis occurs by a general acid-base mechanism, in which nucleobases are directly involved in deprotonation of the attacking 2'-hydroxyl group and protonation of the 5'-oxygen that serves as the leaving group in the cle...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047941z

    authors: Han J,Burke JM

    更新日期:2005-05-31 00:00:00