Kinetics of long-chain (sphingoid) base biosynthesis in intact LM cells: effects of varying the extracellular concentrations of serine and fatty acid precursors of this pathway.

Abstract:

:Serine palmitoyltransferase (EC 2.3.1.50) catalyzes the condensation of L-serine and palmitoyl-CoA to yield 3-ketosphinganine in the first unique reaction of long-chain (sphingoid) base biosynthesis. The kinetic effects of changing the extracellular concentrations of the precursors for this pathway were studied with LM cells by following the incorporation of L-[3-14C]serine into the long-chain base (i.e., sphinganine and sphingenine) backbones of complex sphingolipids. [14C]Serine was taken up by the cells and rapidly reached steady-state concentrations similar to those of the medium. From the cellular [14C]serine concentrations and specific activities, the apparent Vmax [14 pmol min-1 (10(6) cells)-1] and Km (0.23 mM) values for long-chain base synthesis were determined and found to be essentially identical with those for serine palmitoyltransferase assayed in vitro [i.e., 13 pmol min-1 (10(6) cells)-1 and 0.27 mM, respectively]. The other precursor, palmitic acid, was also taken up rapidly and increased long-chain base biosynthesis in a concentration-dependent manner. This effect was limited to palmitic acid and matched the known specificity of serine palmitoyltransferase for saturated fatty acyl-CoA's of 16 +/- 1 carbon atoms. These studies delineate the influence of extracellular precursors on the formation of the sphingolipid backbone and suggest that the kinetic properties of serine palmitoyltransferase govern this behavior of long-chain base synthesis in intact cells.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Merrill AH Jr,Wang E,Mullins RE

doi

10.1021/bi00401a051

subject

Has Abstract

pub_date

1988-01-12 00:00:00

pages

340-5

issue

1

eissn

0006-2960

issn

1520-4995

journal_volume

27

pub_type

杂志文章
  • Characterization of the adenosinetriphosphatase and transport activities of purified cystic fibrosis transmembrane conductance regulator.

    abstract::The cystic fibrosis transmembrane conductance regulator (CFTR) functions in vivo as a cAMP-activated chloride channel. A member of the ATP-binding cassette superfamily of membrane transporters, CFTR contains two transmembrane domains (TMDs), two nucleotide-binding domains (NBDs), and a regulatory (R) domain. It is pre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035382a

    authors: Ketchum CJ,Rajendrakumar GV,Maloney PC

    更新日期:2004-02-03 00:00:00

  • Paramecium calmodulin mutants defective in ion channel regulation associate with melittin in the absence of calcium but require it for tertiary collapse.

    abstract::Calmodulin (CaM) is a small acidic protein essential to calcium-mediated signal transduction. Conformational change driven by calcium binding controls its selective activation of myriad target proteins. In most well characterized cases, both homologous domains of CaM interact with a target protein. However, physiologi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0023091

    authors: Sorensen BR,Eppel JT,Shea MA

    更新日期:2001-01-30 00:00:00

  • Mechanism of autophosphorylation of mycobacterial PknB explored by molecular dynamics simulations.

    abstract::Mycobacterial Ser/Thr kinase, PknB, is essential for the growth of the pathogen. Unphosphorylated PknB is catalytically inactive, and its activation requires autophosphorylation of Thr residues on the activation loop. Autophosphorylation can in principle take place via two distinct mechanisms. Intermolecular trans aut...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500245v

    authors: Damle NP,Mohanty D

    更新日期:2014-07-22 00:00:00

  • Evaluation of structure-function relationships in the core light-harvesting complex of photosynthetic bacteria by reconstitution with mutant polypeptides.

    abstract::Seven mutant LH1 polypeptides of Rhodobactor sphaeroides have been isolated, and their behaviors in in vitro reconstitution of LH1 and its subunit complex have been characterized. Two mutants were selected to address the increased stability of the subunit complex of Rb. sphaeroides compared with that of Rhodobacter ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962386p

    authors: Davis CM,Bustamante PL,Todd JB,Parkes-Loach PS,McGlynn P,Olsen JD,McMaster L,Hunter CN,Loach PA

    更新日期:1997-03-25 00:00:00

  • Structure of the conserved HAMP domain in an intact, membrane-bound chemoreceptor: a disulfide mapping study.

    abstract::The HAMP domain is a conserved motif widely distributed in prokaryotic and lower eukaryotic organisms, where it is often found in transmembrane receptors that regulate two-component signaling pathways. The motif links receptor input and output modules and is essential to receptor structure and signal transduction. Rec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701832b

    authors: Swain KE,Falke JJ

    更新日期:2007-12-04 00:00:00

  • Human sterol carrier protein x/sterol carrier protein 2 gene has two promoters.

    abstract::The human sterol carrier protein x (SCPx)/sterol carrier protein 2 (SCP2) gene gives rise to two mRNAs: a 2.8 kb mRNA encoding SCPx, a peroxisome-associated thiolase, and a 1.5 kb mRNA encoding SCP2, which is thought to be an intracellular lipid transfer protein. The SCPx/SCP2 gene is highly expressed in organs involv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00033a042

    authors: Ohba T,Holt JA,Billheimer JT,Strauss JF 3rd

    更新日期:1995-08-22 00:00:00

  • Distal pocket polarity in ligand binding to myoglobin: structural and functional characterization of a threonine68(E11) mutant.

    abstract::Site-directed mutagenesis studies have confirmed that the distal histidine in myoglobin stabilizes bound O2 by hydrogen bonding and have suggested that it is the polar character of the imidazole side chain rather than its size that limits the rate of ligand entry into the protein. We constructed an isosteric Val68 to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00239a025

    authors: Smerdon SJ,Dodson GG,Wilkinson AJ,Gibson QH,Blackmore RS

    更新日期:1991-06-25 00:00:00

  • Membrane topology of human ASBT (SLC10A2) determined by dual label epitope insertion scanning mutagenesis. New evidence for seven transmembrane domains.

    abstract::The membrane topology of the human apical sodium-dependent bile acid transporter (hASBT) remains unresolved. Whereas N-glycosylation analysis favors a 7 transmembrane (TM) model, membrane insertion scanning supports a 9TM topology. In order to resolve this controversy, we used dual label epitope insertion to systemati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052202j

    authors: Banerjee A,Swaan PW

    更新日期:2006-01-24 00:00:00

  • Thioesterase portability and peptidyl carrier protein swapping in yersiniabactin synthetase from Yersinia pestis.

    abstract::Multimodular enzymes, including polyketide synthases (PKSs), nonribosomal peptide synthetases (NRPSs), and mixed PKS/NRPS systems, contain functional domains with similar functions. Domain swapping and module fusion are potential powerful strategies for creating hybrid enzymes to synthesize modified natural products. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047538s

    authors: Suo Z

    更新日期:2005-03-29 00:00:00

  • Dynamics of ligand binding to alpha-chymotrypsin and to N-methyl-alpha-chymotrypsin.

    abstract::Ks values for binding of selected substrates, competitive inhibitors, and a noncompetitive inhibitor were found to be similar for alpha-chymotrypsin and N-methyl-alpha-chymotrypsin. The rates and steps of binding of a competitive inhibitor and a noncompetitive inhibitor were also found to be similar for alpha-chymotry...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00262a017

    authors: Maehler R,Whitaker JR

    更新日期:1982-09-14 00:00:00

  • Allosteric Modulation of JNK Docking Site Interactions with ATP-Competitive Inhibitors.

    abstract::The c-Jun N-terminal kinases (JNKs) play a wide variety of roles in cellular signaling processes, dictating important, and even divergent, cellular fates. These essential kinases possess docking surfaces distal to their active sites that interact with diverse binding partners, including upstream activators, downstream...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00776

    authors: Lombard CK,Davis AL,Inukai T,Maly DJ

    更新日期:2018-10-09 00:00:00

  • Characterization and purification of the discoidin domain-containing protein retinoschisin and its interaction with galactose.

    abstract::RS1, also known as retinoschisin, is an extracellular discoidin domain-containing protein that has been implicated in maintaining the cellular organization and synaptic structure of the vertebrate retina. Mutations in the gene encoding RS1 are responsible for X-linked retinoschisis, a retinal degenerative disease char...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800938g

    authors: Dyka FM,Wu WW,Pfeifer TA,Molday LL,Grigliatti TA,Molday RS

    更新日期:2008-09-02 00:00:00

  • Mapping of steroids binding to 17 beta-hydroxysteroid dehydrogenase type 1 using Monte Carlo energy minimization reveals alternative binding modes.

    abstract::Crystallographic studies of ligand-protein complexes reveal most preferable ligand binding modes, but do not show less populated modes that may contribute to measurable biochemical and biophysical characteristics of the complexes. In some cases, a ligand may bind a protein in essentially different modes. An example is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047553x

    authors: Blanchet J,Lin SX,Zhorov BS

    更新日期:2005-05-17 00:00:00

  • Expression, folding, and thermodynamic properties of the bovine oxytocin-neurophysin precursor: relationships to the intermolecular oxytocin-neurophysin complex.

    abstract::Earlier thermodynamic studies of the intermolecular interactions between mature oxytocin and neurophysin, and of the effects of these interactions on neurophysin folding, raised questions about the intramolecular interactions of oxytocin with neurophysin within their common precursor. To address this issue, the disulf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9912950

    authors: Eubanks S,Lu M,Peyton D,Breslow E

    更新日期:1999-10-12 00:00:00

  • Iso-mechanism of nitroalkane oxidase: 1. Inhibition studies and activation by imidazole.

    abstract::The flavoprotein nitroalkane oxidase catalyzes the oxidation of primary and secondary nitroalkanes to aldehydes and ketones, respectively, transferring electrons to oxygen to form hydrogen peroxide. The steady-state kinetic mechanism of the active flavin adenine dinucleotide-(FAD-) containing form of the enzyme has be...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9922547

    authors: Gadda G,Fitzpatrick PF

    更新日期:2000-02-15 00:00:00

  • Mutational analysis of the roles in catalysis and substrate recognition of arginines 54 and 305, aspartic acid 309, and tryptophan 317 located at subsites 1 and 2 in glucoamylase from Aspergillus niger.

    abstract::The mutants Arg54-->Leu, Arg54-->Lys, Arg305-->Lys, Asp309-->Glu, and Trp317-->Phe, located at subsites 1 and 2 in glucoamylase from Aspergillus niger, provide insight into the importance of specific hydrogen bonds and hydrophobic interactions in substrate recognition, catalytic mechanism, and stability. As suggested ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00032a009

    authors: Frandsen TP,Christensen T,Stoffer B,Lehmbeck J,Dupont C,Honzatko RB,Svensson B

    更新日期:1995-08-15 00:00:00

  • Narrowing substrate specificity in a directly evolved enzyme: the A293D mutant of aspartate aminotransferase.

    abstract::Several mutant Escherichia coli aspartate aminotransferases (eAATases) have been characterized in the attempt to evolve or rationally redesign the substrate specificity of eAATase into that of E. coli tyrosine aminotransferase (eTATase). These include HEX (designed), HEX + A293D (design followed by directed evolution)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0487544

    authors: Chow MA,McElroy KE,Corbett KD,Berger JM,Kirsch JF

    更新日期:2004-10-12 00:00:00

  • Differences in rearrangements of H1 and H5 in chicken erythrocyte chromatin.

    abstract::H1 can rearrange in chicken erythrocyte polynucleosomes in 80 mM NaCl buffers. These rearrangements have been studied by sedimentation analysis. H1 redistributes between polynucleosomes as well as between polynucleosomes and monosomes. In these rearrangements H1 molecules move to free DNA sites. In contrast to H1, the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00508a010

    authors: Lasters I,Muyldermans S,Wyns L,Hamers R

    更新日期:1981-03-03 00:00:00

  • Structural locations and functional roles of new subsites S5, S6, and S7 in memapsin 2 (beta-secretase).

    abstract::Memapsin 2 (beta-secretase) is the membrane-anchored aspartic protease that initiates the cleavage of beta-amyloid precursor protein (APP), leading to the production of amyloid-beta (Abeta), a major factor in the pathogenesis of Alzheimer's disease. The active site of memapsin 2 has been shown, with kinetic data and c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048106k

    authors: Turner RT 3rd,Hong L,Koelsch G,Ghosh AK,Tang J

    更新日期:2005-01-11 00:00:00

  • The colchicine-induced GTPase activity of tubulin: state of the product. Activation by microtubule-promoting cosolvents.

    abstract::Colchicine induces a weak assembly-independent GTPase activity in calf brain tubulin [David-Pfeuty, T., Erickson, H. P., & Pantaloni, D. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 5372-5376; Andreu, J. M., & Timasheff, S. N. (1981) Arch. Biochem. Biophys. 211, 151-157]. Kinetic analysis shows a turnover number of 2 x 10...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00186a027

    authors: Perez-Ramirez B,Shearwin KE,Timasheff SN

    更新日期:1994-05-24 00:00:00

  • Uptake of cesium ions by human erythrocytes and perfused rat heart: a cesium-133 NMR study.

    abstract::Cesium-133 NMR studies have been carried out on suspended human erythrocytes and on perfused rat hearts in media containing CsCl. The resulting spectra exhibit two sharp resonances, arising from intra- and extracellular Cs+, separated in chemical shift by 1.0-1.4 ppm. Thus, intra- and extracellular resonances are easi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a003

    authors: Davis DG,Murphy E,London RE

    更新日期:1988-05-17 00:00:00

  • An error-prone viral DNA ligase.

    abstract::Our recent demonstration that DNA polymerase X (Pol X), the DNA repair polymerase encoded by the African swine fever virus (ASFV), is extremely error prone during single-nucleotide gap filling led us to hypothesize that it might contribute to genetic variability in ASFV. For the infidelity of Pol X to be relevant, how...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047706g

    authors: Lamarche BJ,Showalter AK,Tsai MD

    更新日期:2005-06-14 00:00:00

  • Characterization of the monomeric form of the transmembrane and cytoplasmic domains of the integrin beta 3 subunit by NMR spectroscopy.

    abstract::We have characterized a membrane protein containing residues P688-T762 of the integrin beta3 subunit, encompassing its transmembrane and cytoplasmic domains, by nuclear magnetic resonance spectroscopy. Under conditions in which it is monomeric in dodecylphosphocholine micelles, the protein consists mainly of alpha-hel...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026822l

    authors: Li R,Babu CR,Valentine K,Lear JD,Wand AJ,Bennett JS,DeGrado WF

    更新日期:2002-12-31 00:00:00

  • Energetics of peptide recognition by the second PDZ domain of human protein tyrosine phosphatase 1E.

    abstract::Formation of protein-protein assemblies is essential in maintaining cell structure and function. Conservation of structural motifs and binding sites is the result of evolutionary pressure for solutions compatible with both molecular economy and regulation. PDZ domains are a typical example: A conserved fold governs sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061869i

    authors: Milev S,Bjelić S,Georgiev O,Jelesarov I

    更新日期:2007-01-30 00:00:00

  • Substrate binding to the peripheral site of acetylcholinesterase initiates enzymatic catalysis. Substrate inhibition arises as a secondary effect.

    abstract::Two sites of ligand interaction in acetylcholinesterase (AChE) were first demonstrated in ligand binding studies and later confirmed by crystallography, site-specific mutagenesis, and molecular modeling: an acylation site at the base of the active site gorge and a peripheral site at its mouth. We recently introduced a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9813577

    authors: Szegletes T,Mallender WD,Thomas PJ,Rosenberry TL

    更新日期:1999-01-05 00:00:00

  • Hydrogen-1 nuclear magnetic resonance study of the complexes of two diastereoisomers of folinic acid with dihydrofolate reductase.

    abstract::The 1H chemical shifts for the formyl and benzoyl protons of the individual diastereoisomeres of folinic acid bound to dihydrofolate reductase have been measured. For the tightly bound biologically active 6S, alpha S isomer, the "bound" signals were assigned by using transfer of saturation methods. In this case, only ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00510a019

    authors: Feeney J,Birdsall B,Albrand JP,Roberts GC,Burgen AS,Charlton PA,Young DW

    更新日期:1981-03-31 00:00:00

  • Another role for CO with nitrogenase? CO stimulates hydrogen evolution catalyzed by variant Azotobacter vinelandii Mo-nitrogenases.

    abstract::A likely entry/exit path for nitrogenase substrates, products, and/or protons involves residues α277(Arg), α192(Ser), and α356(Gly), all of which are highly conserved among MoFe proteins from different organisms. The α192(Ser) and α277(Arg) residues form part of a hydrogen-bonded network that also involves α195(His), ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500546k

    authors: Fisher K,Hare ND,Newton WE

    更新日期:2014-10-07 00:00:00

  • In vitro kinetic analysis of substrate specificity in enterobactin biosynthetic lower pathway enzymes provides insight into the biochemical function of the hot dog-fold thioesterase EntH.

    abstract::The Escherichia coli siderophore enterobactin is assembled from 2,3-dihydroxybenzoate (2,3-DHB) and l-serine by the nonribosomal peptide synthetases EntB and EntF. The processive thiol-template strategy used can be sabotaged by EntB misacylation. Through in vitro kinetic analysis, we demonstrate two potential routes t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802207t

    authors: Chen D,Wu R,Bryan TL,Dunaway-Mariano D

    更新日期:2009-01-27 00:00:00

  • Manganese-binding proteins of the oxygen-evolving complex.

    abstract::The extrinsic 33-kDa protein (P33) was cross-linked covalently to the binding site on P33-depleted PSII preparations which is responsible for reconstitution of photosynthetic water oxidation after PSII preparations have been washed with 1 M CaCl2. Conditions were found in which more than half of the cross-linked prote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00439a033

    authors: Mei R,Green JP,Sayre RT,Frasch WD

    更新日期:1989-06-27 00:00:00

  • Effect of sequence on the conformation of DNA holliday junctions.

    abstract::Structures of the DNA sequences d(CCGGCGCCGG) and d(CCAGTACbr(5)UGG) are presented here as four-way Holliday junctions in their compact stacked-X forms, with antiparallel alignment of the DNA strands. Thus, the ACC-trinucleotide motif, previously identified as important for stabilizing the junction, is now extended to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0346603

    authors: Hays FA,Vargason JM,Ho PS

    更新日期:2003-08-19 00:00:00