Significant genetic and antigenic variability within the env gene of systemic human immunodeficiency virus type 1 group O populations during the natural course of a heterosexual infection: a pilot study.

Abstract:

:We assessed the genetic and the antigenic variability within the env gene of peripheral blood human immunodeficiency virus (HIV) type 1 (HIV-1) group O populations during the natural course of a female heterosexual infection. Our data revealed the existence of a significant increase in amino acid sequence variability within the C2-V3 and gp41 regions (P = 0.023 and P < 0.001, respectively) in association with substitutions within neutralizing epitope sequences usually selected for HIV serological assays. These antigenic variations might significantly decrease the sensitivity of classical HIV enzyme-linked immunosorbent assays with blood samples of subjects heterosexually infected by HIV-1 group O strains. These findings may be of significant use both to devise diagnostic tools and to pursue suitable therapeutic modalities in cases of heterosexual infection by outlier HIV-1 strains.

journal_name

J Clin Microbiol

authors

Andréoletti L,Réveil B,Moret H,Brodard V,Philbert F,Tabary T,Cohen JH

doi

10.1128/JCM.01818-06

subject

Has Abstract

pub_date

2007-04-01 00:00:00

pages

1319-21

issue

4

eissn

0095-1137

issn

1098-660X

pii

JCM.01818-06

journal_volume

45

pub_type

杂志文章
  • Isolation of Legionella pneumophila from blood with the BACTEC system: a prospective study yielding positive results.

    abstract::In a prospective study of 16 patients with Legionnaires disease confirmed by cultural isolation of Legionella pneumophila from the respiratory tract, 38% (6 of 16) had positive blood cultures. Daily subcultures were made onto buffered charcoal-yeast extract plates from 6B aerobic and 7C anaerobic BACTEC blood culture ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.22.3.422-424.1985

    authors: Rihs JD,Yu VL,Zuravleff JJ,Goetz A,Muder RR

    更新日期:1985-09-01 00:00:00

  • Microbiological assessment of 24- and 48-h changes and management of semiclosed circuits from ventilators in a neonatal intensive care unit.

    abstract::The contamination of semiclosed disposable circuits of Healthdyne and Bourns ventilators was studied in a newborn intensive care unit over a 2-year period. A total of 379 fluid samples was obtained from inspiratory and expiratory tubing condensates and traps and from thermal humidifier columns fed with prefilled conta...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.23.2.322-328.1986

    authors: Malecka-Griggs B

    更新日期:1986-02-01 00:00:00

  • Evaluation of Etest for rapid susceptibility testing of Mycobacterium chelonae and M. fortuitum.

    abstract::Etest is a new concept for MIC determinations for antimicrobial agents that is based on a predefined antibiotic gradient on a plastic strip calibrated with a continuous logarithmic MIC scale covering 15 twofold dilutions. Etest was compared with a reference agar dilution method for susceptibility testing of clinical i...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.32.8.1846-1849.1994

    authors: Hoffner SE,Klintz L,Olsson-Liljequist B,Bolmström A

    更新日期:1994-08-01 00:00:00

  • Disseminated Geotrichum candidum infection.

    abstract::The pathogenicity of the fungus Geotrichum candidum in humans has not been clearly defined. A patient with acute leukemia who developed a fatal disseminated G. candidum infection while neutropenic is described. At autopsy examination, this patient was misdiagnosed on the basis of histopathology as having disseminated ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.25.9.1782-1783.1987

    authors: Kassamali H,Anaissie E,Ro J,Rolston K,Kantarjian H,Fainstein V,Bodey GP

    更新日期:1987-09-01 00:00:00

  • Carious dentine provides a habitat for a complex array of novel Prevotella-like bacteria.

    abstract::Previous analysis of the microbiology of advanced caries by culture and real-time PCR emphasized the high incidence and abundance of gram-negative anaerobic species, particularly Prevotella-like bacteria. The diversity of Prevotella-like bacteria was further explored by analyzing pooled bacterial DNA from lesions of c...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.42.11.5238-5244.2004

    authors: Nadkarni MA,Caldon CE,Chhour KL,Fisher IP,Martin FE,Jacques NA,Hunter N

    更新日期:2004-11-01 00:00:00

  • Identification of Escherichia coli K1 antigen.

    abstract::We compared the use of bacteriophage sensitivity, seroagglutination with polyclonal antisera raised in rabbits or horses, seroagglutination with murine monoclonal antibody, and the serum agar precipitin technique for the detection of K1 capsular polysaccharide among clinical isolates of Escherichia coli obtained from ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.20.2.302-304.1984

    authors: Cross A,Orskov I,Orskov F,Sadoff J,Gemski P

    更新日期:1984-08-01 00:00:00

  • Direct immunofluorescence microscopy for rapid screening of Campylobacter enteritis.

    abstract::Diagnostic use of a direct fluorescent-antibody test for detection of Campylobacter jejuni and C. coli in human fecal specimens (n = 497) was compared with detection by culturing (specificity, 99.7%; sensitivity, 40%). Conjugates were prepared from immunoglobulin G antibody against 22 Lior C. jejuni and C. coli refere...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.24.5.863-865.1986

    authors: Hodge DS,Prescott JF,Shewen PE

    更新日期:1986-11-01 00:00:00

  • Value of enterobacterial repetitive intergenic consensus PCR for study of Pasteurella multocida strains isolated from mouths of dogs.

    abstract::Fifty-six Pasteurella multocida strains (40 P. multocida subsp. septica and 16 P. multocida subsp. multocida strains) isolated from the mouths of 56 dogs among the 134 living in a French canine military training center (132e Groupe Cynophile de l'Armée de Terre, Suippes, France) were studied by use of enterobacterial ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.8.2488-2492.1999

    authors: Loubinoux J,Lozniewski A,Lion C,Garin D,Weber M,Le Faou AE

    更新日期:1999-08-01 00:00:00

  • Identification of newly described Streptococcus pneumoniae serotype 6D by use of the Quellung reaction and PCR.

    abstract::We tested 121 pneumococcal serogroup 6 isolates (including 30 serotype 6C and 24 serotype 6D isolates) by serotype-specific PCR and the Quellung reaction, using "old" and "new" pool B, factor 6b, and new factor 6d antisera. In combination with group B and other factor antisera, factor 6d antiserum can reliably identif...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00675-10

    authors: Oftadeh S,Satzke C,Gilbert GL

    更新日期:2010-09-01 00:00:00

  • Sequence diversity of the Escherichia coli H7 fliC genes: implication for a DNA-based typing scheme for E. coli O157:H7.

    abstract::Flagellar (H) antigens are mostly encoded by genes at the fliC locus in E. coli. We have sequenced 11 H7 fliC genes from Escherichia coli strains that belong to seven O serotypes. These sequences, together with those of nine other H7 fliC genes (from strains of three different O serotypes) sequenced recently (S. D. Re...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.5.1786-1790.2000

    authors: Wang L,Rothemund D,Curd H,Reeves PR

    更新日期:2000-05-01 00:00:00

  • Comparison of serological reactions of typed Fusobacterium nucleatum strains with those of isolates from humans, canines, and a Macaca mulatta monkey.

    abstract::In the present study, we compared typed F. nucleatum strains with isolates from various human periodontal diseases, canines, and a Macaca mulatta monkey. All isolates displayed biochemical reactions similar to those of the typed strains in the API 20A system (Analytab Products, Plainville, N.Y.). The human and monkey ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.17.4.631-635.1983

    authors: Vincent JW,Falkler WA Jr,Craig JA

    更新日期:1983-04-01 00:00:00

  • Isolation of Helicobacter pylori from saliva.

    abstract::Helicobacter pylori was grown in low numbers from the saliva of one of nine patients who were positive for gastric H. pylori. The saliva-derived isolate from this patient was identical to the antral biopsy-derived isolate from the same patient and differed from isolates cultured from the antral biopsies of all other p...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.31.10.2802-2804.1993

    authors: Ferguson DA Jr,Li C,Patel NR,Mayberry WR,Chi DS,Thomas E

    更新日期:1993-10-01 00:00:00

  • Relationships among the results of coagulase, staphylococcal toxin, and thermonuclease tests on staphylococci from cow milk.

    abstract::Production of staphylococcal alpha- or alpha-beta-toxins correlated well with production of coagulase or thermonuclease (or both) in 203 Staphylococcus aureus isolates from milk and should be reliable indicators of S. aureus in the absence of Staphylococcus intermedius. Failures to produce toxin, tube coagulase, or th...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.21.4.582-584.1985

    authors: Jasper DE,Infante F,Dellinger JD

    更新日期:1985-04-01 00:00:00

  • Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.

    abstract::Fast and accurate identification and typing of pathogens are essential for effective surveillance and outbreak detection. The current routine procedure is based on a variety of techniques, making the procedure laborious, time-consuming, and expensive. With whole-genome sequencing (WGS) becoming cheaper, it has huge po...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.03617-13

    authors: Joensen KG,Scheutz F,Lund O,Hasman H,Kaas RS,Nielsen EM,Aarestrup FM

    更新日期:2014-05-01 00:00:00

  • Rapid detection of New Delhi metallo-β-lactamase gene and variants coding for carbapenemases with different activities by use of a PCR-based in vitro protein expression method.

    abstract::New Delhi metallo-β-lactamase (NDM)-producing bacteria are considered potential global health threats. It is necessary to monitor NDM-1 and its variants in clinical isolates in order to understand the NDM-1 epidemic and the impact of its variants on β-lactam resistance. To reduce the lengthy time needed for cloning an...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.03363-13

    authors: Huang L,Hu X,Zhou M,Yang Y,Qiao J,Wang D,Yu J,Cui Z,Zhang Z,Zhang XE,Wei H

    更新日期:2014-06-01 00:00:00

  • Characterization of Streptococcus agalactiae strains by randomly amplified polymorphic DNA analysis.

    abstract::A collection of 54 unrelated Streptococcus agalactiae strains isolated from cerebrospinal fluid samples from neonates and 60 unrelated strains isolated from carriers that had been previously studied by multilocus enzyme electrophoresis (R. Quentin, H. Huet, F.-S. Wang, P. Geslin, A. Goudeau, and R. K. Selander, J. Cli...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.35.10.2573-2579.1997

    authors: Chatellier S,Ramanantsoa C,Harriau P,Rolland K,Rosenau A,Quentin R

    更新日期:1997-10-01 00:00:00

  • Growth of coagulase-negative staphylococci on colistin-nalidixic acid agar and susceptibility to polymyxins.

    abstract::Colistin-nalidixic acid agar, although recently recommended as a replacement for blood agar for primary plating of urine specimens ( Fung et al., J. Clin. Microbiol. 16:632-636, 1982), has also been reported to suppress the growth of some strains of staphylococci that are susceptible to colistin (polymyxin E). The sus...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.19.5.714-716.1984

    authors: Fung JC,McKinley G,Tyburski MB,Berman M,Goldstein J

    更新日期:1984-05-01 00:00:00

  • Systematic investigation of enrichment media for wild-type Campylobacter jejuni strains.

    abstract::Of the media examined, thioglycolate broth supplemented with 5% lysed sheep blood, Butzler antibiotic mixture, and 0.1% lauryl sulfate was the most sensitive enrichment medium for recovery of wild-type strains of Campylobacter jejuni from cecal contents of chickens and chicken livers. It allowed the retrieval of 1 CFU...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.20.1.77-80.1984

    authors: Barot MS,Bokkenheuser VD

    更新日期:1984-07-01 00:00:00

  • A common variant of staphylococcal cassette chromosome mec type IVa in isolates from Copenhagen, Denmark, is not detected by the BD GeneOhm methicillin-resistant Staphylococcus aureus assay.

    abstract::Rapid tests for detection of methicillin-resistant Staphylococcus aureus (MRSA) carriage are important to limit the transmission of MRSA in the health care setting. We evaluated the performance of the BD GeneOhm MRSA real-time PCR assay using a diverse collection of MRSA isolates, mainly from Copenhagen, Denmark, but ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02153-08

    authors: Bartels MD,Boye K,Rohde SM,Larsen AR,Torfs H,Bouchy P,Skov R,Westh H

    更新日期:2009-05-01 00:00:00

  • Development and validation of a sensitive and specific sodB-based quantitative PCR assay for molecular detection of Ehrlichia species.

    abstract::We developed a sensitive and specific sodB-based quantitative PCR assay to detect Ehrlichia spp. The assay's limit of detection was 5 copies/reaction, and it did not amplify nonspecific DNA. Compared with a 16S rRNA gene PCR target, the sodB target may offer an improved molecular diagnostic assay to detect Ehrlichia s...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02340-14

    authors: Qurollo BA,Riggins D,Comyn A,Zewde MT,Breitschwerdt EB

    更新日期:2014-11-01 00:00:00

  • High prevalence of human metapneumovirus infection in young children and genetic heterogeneity of the viral isolates.

    abstract::RNA of the newly identified human metapneumovirus (HMPV) was detected in nasopharyngeal aspirates of 11 of 63 (17.5%) young children with respiratory tract disease. Markers of infection caused by another member of the Pneumovirinae subfamily of the family Paramyxoviridae, respiratory syncytial virus (RSV), were identi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.41.7.3043-3045.2003

    authors: Viazov S,Ratjen F,Scheidhauer R,Fiedler M,Roggendorf M

    更新日期:2003-07-01 00:00:00

  • Identification of Pneumocystis carinii f. sp. hominis gene sequences in filtered air in hospital environments.

    abstract::To evaluate the risk of a nosocomial spread of Pneumocystis carinii f. sp. hominis (P. carinii hominis), air filter samples from rooms of P. carinii pneumonia (PCP) patients, adjacent corridors, and other hospital environments have been investigated for the presence of P. carinii hominis. Amplified DNA from air filter...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.6.1737-1740.1998

    authors: Olsson M,Lidman C,Latouche S,Björkman A,Roux P,Linder E,Wahlgren M

    更新日期:1998-06-01 00:00:00

  • Evaluation of transport media for Campylobacter jejuni in human fecal specimens.

    abstract::It is not always possible to culture feces immediately, and appropriate methods for transport of human specimens, unlike those from animals, have not been fully evaluated. Therefore, we took serial subcultures in two phases from six transport media inoculated with human diarrheal stools known to be positive for Campyl...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.18.4.803-807.1983

    authors: Wang WL,Reller LB,Smallwood B,Luechtefeld NW,Blaser MJ

    更新日期:1983-10-01 00:00:00

  • Diagnosis of placental malaria.

    abstract::In a group of 596 delivering Ghanaian women, the sensitivities of peripheral blood thick film microscopy, ICT Malaria P.f/P.v test, and PCR in detecting microscopically confirmed placental Plasmodium falciparum infection were 42, 80, and 97%, respectively. In addition to the gross underestimation of placental malaria ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.40.1.306-308.2002

    authors: Mockenhaupt FP,Ulmen U,von Gaertner C,Bedu-Addo G,Bienzle U

    更新日期:2002-01-01 00:00:00

  • Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens.

    abstract::A reverse transcription-seminested PCR (RT-snPCR) assay was developed for the detection and identification of enterovirus (EV) RNA in clinical specimens. Three conserved protein motifs were identified by aligning the VP3 and VP1 sequences of prototype EV strains. Consensus degenerate primers were designed from a conse...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00542-06

    authors: Nix WA,Oberste MS,Pallansch MA

    更新日期:2006-08-01 00:00:00

  • Racial tropism of a highly toxic clone of Actinobacillus actinomycetemcomitans associated with juvenile periodontitis.

    abstract::Actinobacillus actinomycetemcomitans strains with enhanced levels of production of leukotoxin are characterized by a 530-bp deletion from the promoter region of the leukotoxin gene operon. Previous isolates with this deletion constituted a single clone belonging to serotype b, although they displayed minor differences...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.35.12.3037-3042.1997

    authors: Haubek D,Dirienzo JM,Tinoco EM,Westergaard J,López NJ,Chung CP,Poulsen K,Kilian M

    更新日期:1997-12-01 00:00:00

  • Characterization of human cytomegalovirus strains by analysis of short tandem repeat polymorphisms.

    abstract::Human cytomegalovirus (HCMV) strains display genetic polymorphisms, and these polymorphisms can be analyzed to study viral transmission and pathogenesis. Recently, short tandem repeat (STR) length polymorphisms have been identified in the HCMV genome. We assessed the utility of STRs in characterizing HCMV strains and ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.39.6.2219-2226.2001

    authors: Walker A,Petheram SJ,Ballard L,Murph JR,Demmler GJ,Bale JF Jr

    更新日期:2001-06-01 00:00:00

  • Typing and subtyping influenza virus using DNA microarrays and multiplex reverse transcriptase PCR.

    abstract::A model DNA microarray has been prepared and shown to facilitate typing and subtyping of human influenza A and B viruses. Reverse transcriptase PCR was used to prepare cDNAs encoding approximately 500-bp influenza virus gene fragments, which were then cloned, sequenced, reamplified, and spotted to form a glass-bound m...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.39.2.696-704.2001

    authors: Li J,Chen S,Evans DH

    更新日期:2001-02-01 00:00:00

  • Toward molecular parasitologic diagnosis: enhanced diagnostic sensitivity for filarial infections in mobile populations.

    abstract::The diagnosis of filarial infections among individuals residing in areas where the disease is not endemic requires both strong clinical suspicion and expert training in infrequently practiced parasitological methods. Recently developed filarial molecular diagnostic assays are highly sensitive and specific but have lim...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01697-10

    authors: Fink DL,Fahle GA,Fischer S,Fedorko DF,Nutman TB

    更新日期:2011-01-01 00:00:00

  • Isolation of Yersinia enterocolitica from swine.

    abstract::Data pertaining to 20 strains of Yensinia enterocolitica isolated from the cecal content of swine slaughtered at Toronto Abattoirs are presented. Fifteen of 20 cultures belonged to the two predominant human serotypes in Ontario (i.e., serotype O:3 and O:5,27.) Seven cultures of Y. enterocolitica O:3 belonged to the "C...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Toma S,Deidrick VR

    更新日期:1975-12-01 00:00:00