A novel vector for positive selection of inserts harboring an open reading frame by translational coupling.

Abstract:

:We have developed a novel vector pTCS, as a tool for efficient selection of open reading frame (ORF)-containing inserts. In pTCS clones containing an insert with an ORF a downstream marker gene (immE3, conferring resistance to colicin) is activated via translational coupling with the insert, and transformed cells can then be selected by exposure to colicin E3. Our method differs from previous methods in that the marker gene is activated without protein fusion, and that selection occurs irrespective of the reading frame of the insert.

journal_name

Biotechniques

journal_title

BioTechniques

authors

Ohashi-Kunihiro S,Yohda M,Masaki H,Machida M

doi

10.2144/000112629

subject

Has Abstract

pub_date

2007-12-01 00:00:00

pages

751-2, 754

issue

6

eissn

0736-6205

issn

1940-9818

pii

000112629

journal_volume

43

pub_type

杂志文章
  • Rapid colchicine competition-binding scintillation proximity assay using biotin-labeled tubulin.

    abstract::We have developed a rapid [3H]colchicine competition-binding scintillation proximity assay (SPA) to evaluate antimitotic compounds that bind to the colchicine-binding site on tubulin. The premise of our assay is that compounds will compete with radiolabeled colchicine for the tubulin-binding domain. Biotin-labeled tub...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/00291rr02

    authors: Tahir SK,Kovar P,Rosenberg SH,Ng SC

    更新日期:2000-07-01 00:00:00

  • 3' RACE walking along a large cDNA employing tiered suppression PCR.

    abstract::Large genes present particular cloning difficulties, especially when expressed at relatively low levels. We describe a novel method, termed 3' rapid amplification of cDNA ends (RACE) walking, for the rapid determination of unknown 3' flanking sequence of a large cDNA. The technique is a derivative of the anchored PCR ...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/03344st04

    authors: Park DJ,Pask AJ,Renfree MB,Graves JA

    更新日期:2003-04-01 00:00:00

  • S-Gal: an autoclavable dye for color selection of cloned DNA inserts.

    abstract::Blue/white selection is the standard method for detecting a cloned DNA fragment. In the absence of an insert, uninterrupted expression of the vector-encoded alpha-complement of beta-galactosidase (beta-gal), results in the hydrolysis of X-gal (5-bromo-4-chloro-3-indolyl-beta-D-galactoside) and the subsequent blue stai...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/01305pf01

    authors: Heuermann K,Cosgrove J

    更新日期:2001-05-01 00:00:00

  • An effective, low-cost method for achieving and maintaining hypoxia during cell culture studies.

    abstract::Here we report a simple new method for exposing cells to normoxic and hypoxic conditions using vacuum bags, normally employed for food storage, to establish and maintain low oxygen levels in vitro. Vacuum bags were gassed with a mixture containing specified levels of oxygen, then sealed, creating a hypoxic microenviro...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000114341

    authors: Bakmiwewa SM,Heng B,Guillemin GJ,Ball HJ,Hunt NH

    更新日期:2015-10-01 00:00:00

  • [Letter to the Editor] Many commercial hot-start polymerases demonstrate activity prior to thermal activation.

    abstract::Address correspondence to Martin A. Kennedy, Department of Pathology & Carney Centre for Pharmacogenomics, University of Otago, Christchurch, PO Box 4345, Christchurch, New Zealand. E-mail: martin.kennedy@otago.ac.nz. ...

    journal_title:BioTechniques

    pub_type: 信件

    doi:10.2144/000114481

    authors: Stevens AJ,Appleby S,Kennedy MA

    更新日期:2016-12-01 00:00:00

  • Use of signal-distinguishable probes in differential or sequential autoradiography in hybridization analysis.

    abstract::To avoid the time-consuming reprobing process in hybridization analysis, signal-distinguishable probes (32P, 35S or antigenic hapten-labeled DNA) can be added to the same hybridization mixture. After hybridization, an unambiguous result can be obtained by differential or sequential autoradiography. ...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Au LC,Chang KJ,Shih CM,Teh GW

    更新日期:1994-04-01 00:00:00

  • A device for stereotaxic viral delivery into the brains of neonatal mice.

    abstract::The increasing interest in manipulating neural circuits in developing brains has created a demand for reliable and accurate methods for delivering viruses to newborn mice. Here we describe a novel 3D-printed mouse neonatal stereotaxic adaptor for intracerebral viral injection that provides enhanced precision and relia...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2020-0050

    authors: Olivetti PR,Lacefield CO,Kellendonk C

    更新日期:2020-10-01 00:00:00

  • Highly efficient oligonucleotide transfer into intact yeast cells using square-wave pulse electroporation.

    abstract::Here, we present a rapid and reproducible procedure based on square-wave pulse electroporation that allows efficient penetration of synthetic oligonucleotides into intact yeast cells. This procedure was successfully used to modify the yeast genome with small amounts of oligonucleotide. ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/98252gt04

    authors: Barre FX,Mir LM,Lécluse Y,Harel-Bellan A

    更新日期:1998-08-01 00:00:00

  • Software to improve transfer and reproducibility of cell culture methods.

    abstract::Cell culture is a vital component of laboratories throughout the scientific community, yet the absence of standardized protocols and documentation practice challenges laboratory efficiency and scientific reproducibility. We examined the effectiveness of a cloud-based software application, CultureTrax® as a tool for st...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2018-0062

    authors: Canfield SG,Jin G,Palecek SP,Sampsell T

    更新日期:2018-11-01 00:00:00

  • A new approach to follow a single extracellular vesicle-cell interaction using optical tweezers.

    abstract::Extracellular vesicles (EVs) are spherical membrane structures released by most cells. These highly conserved mediators of intercellular communication carry proteins, lipids, and nucleic acids, and transfer these cellular components between cells by different mechanisms, such as endocytosis, macropinocytosis, or fusio...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000114371

    authors: Prada I,Amin L,Furlan R,Legname G,Verderio C,Cojoc D

    更新日期:2016-01-01 00:00:00

  • Two-hybrid system for characterization of protein-protein interactions in E. coli.

    abstract::The yeast two-hybrid system has been used to characterize many protein-protein interactions. A two-hybrid system for E. coli was constructed in which one hybrid protein bound to a specific DNA site recruits another to an adjacent DNA binding site. The first hybrid comprises a test protein, the bait, fused to a chimeri...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/00292st04

    authors: Hays LB,Chen YS,Hu JC

    更新日期:2000-08-01 00:00:00

  • Patents and patent office resources in biotechnology.

    abstract::Patents play an increasingly important role in the dissemination of information in many fast moving fields such as biotechnology and semiconductors. Quite a few new developments are introduced as patents, and only later, if at all, do they find their way into the scientific literature. In spite of this, patents lack w...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Koniarek JP,Coleman KD

    更新日期:1988-02-01 00:00:00

  • Measurement of isolated myocyte volume using the Coulter models Z2 and ZM/C256: a comparison of instrument function.

    abstract::Changes in cardiac structure that depart from normal have generally been termed "remodeling". Assessment of ventricular remodeling at the cellular level should include measurement of myocyte dimensions. A well-established and reliable method to assess myocyte remodeling uses isolated cells and the Coulter Counter/Chan...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/98253pf02

    authors: Said S,Tamura T,Gerdes AM

    更新日期:1998-09-01 00:00:00

  • An improved Huffman coding method for archiving text, images, and music characters in DNA.

    abstract::An improved Huffman coding method for information storage in DNA is described. The method entails the utilization of modified unambiguous base assignment that enables efficient coding of characters. A plasmid-based library with efficient and reliable information retrieval and assembly with uniquely designed primers is...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000113218

    authors: Ailenberg M,Rotstein O

    更新日期:2009-09-01 00:00:00

  • Genetically encoded far-red fluorescent sensors for caspase-3 activity.

    abstract::Caspase-3 is a key effector caspase that is activated in both extrinsic and intrinsic pathways of apoptosis. Available fluorescent sensors for caspase-3 activity operate in relatively short wavelength regions and are nonoptimal for multiparameter microscopy and whole-body imaging. In the present work, we developed new...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000114377

    authors: Zlobovskaya OA,Sergeeva TF,Shirmanova MV,Dudenkova VV,Sharonov GV,Zagaynova EV,Lukyanov KA

    更新日期:2016-02-01 00:00:00

  • Adaptation of conformation-sensitive gel electrophoresis to an ALFexpress DNA sequencer to screen BRCA1 mutations.

    abstract::Conformation-sensitive gel electrophoresis (CSGE) has been introduced as the most reliable method for the screening of large and multi-exon genes because of its simplicity, sensitivity and specificity. Based on heteroduplex formation and with the use of mildly denaturing solvents, it allows detection of single-base mu...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/00285rr08

    authors: Blesa JR,Hernández-Yago J

    更新日期:2000-05-01 00:00:00

  • A concise guide to cDNA microarray analysis.

    abstract::Microarray expression analysis has become one of the most widely used functional genomics tools. Efficient application of this technique requires the development of robust and reproducible protocols. We have optimized all aspects of the process, including PCR amplification of target cDNA clones, microarray printing, p...

    journal_title:BioTechniques

    pub_type: 杂志文章,评审

    doi:10.2144/00293bi01

    authors: Hegde P,Qi R,Abernathy K,Gay C,Dharap S,Gaspard R,Hughes JE,Snesrud E,Lee N,Quackenbush J

    更新日期:2000-09-01 00:00:00

  • Rapid polymerase chain reaction amplification using intact bacterial cells.

    abstract::We have demonstrated that efficient polymerase chain reaction amplifications from chromosomal DNA can be carried out using whole bacterial cells as the starting material. Cells from the liquid or solid cultures can be used directly, without any pre-treatment, thus eliminating the need for DNA isolation. ...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Joshi AK,Baichwal V,Ames GF

    更新日期:1991-01-01 00:00:00

  • How to transition from 'early career' to 'established'.

    abstract::PhDs, postdocs, fellows and newly appointed lecturers all fall into the category of early-career researchers (ECRs). The life of researchers in early stages of their career is far from straightforward. Funding is a huge barrier for many ECRs looking to make the next step in their career, but it's not the only challeng...

    journal_title:BioTechniques

    pub_type: 新闻

    doi:10.2144/btn-2018-0182

    authors:

    更新日期:2019-01-01 00:00:00

  • Optimized multiplex IgH/ras PCR: a tool for quantitative monitoring of B-lymphoproliferative disorders.

    abstract::The use of quantitative PCR is recommended to monitor the level of residual hematological malignancies. The proposed multiplex IgH/ras PCR uses a co-amplification of the clonal CDR3 rearrangement of the immunoglobulin heavy chain gene (IgH) as a disease marker and a segment of the Hras 1 gene containing codon 61 (ras)...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/00284st08

    authors: Slavícková A,Ullmannová V,Klener P

    更新日期:2000-04-01 00:00:00

  • Determination of human NAT2 acetylator genotype by oligonucleotide ligation assay.

    abstract::The oligonucleotide ligation assay (OLA) was adapted to the genotyping of the N-arylamine-acetyltransferase (NAT2) gene. This assay allows the use of 96-well microplates and robotic workstations for high sample throughput. We found this assay to be accurate, efficient and reliable. Another advantage for epidemiologica...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/97224st03

    authors: Bigler J,Chen C,Potter JD

    更新日期:1997-04-01 00:00:00

  • Post-hybridization recovery of membrane filter-bound DNA for enzymatic DNA amplification.

    abstract::We describe here a simple and rapid method for enzymatic DNA amplification using DNA template recovered from membrane filters previously used in hybridization analysis. This is done by first solubilizing membrane pieces carrying DNA of interest in dimethyl sulfoxide, followed by isopropanol precipitation and polymeras...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Chong KY,Chen CM,Choo KB

    更新日期:1993-04-01 00:00:00

  • Fluorescent in situ hybridization of maize meiotic chromosomes as visualized by confocal microscopy.

    abstract::Knob heterochromatin served as the model for the development of fluorescent chromosome in situ hybridization on maize meiotic chromosomes. The meiotic chromosomes were hybridized with a digoxigenin-labeled RNA probe of the knob repeat sequence that is a component of the morphologically determined knob heterochromatin....

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Makowski ER,Ruzin SE

    更新日期:1994-02-01 00:00:00

  • Increased efficiency for performing colony formation assays in 96-well plates: novel applications to combination therapies and high-throughput screening.

    abstract::The colony formation assay (CFA) is the gold standard for measuring the effects of cytotoxic agents on cancer cells in vitro; however, in its traditional 6-well format, it is a time-consuming assay, particularly when evaluating combination therapies. In the interest of increased efficiency, the 6-well CFA was converte...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000112757

    authors: Katz D,Ito E,Lau KS,Mocanu JD,Bastianutto C,Schimmer AD,Liu FF

    更新日期:2008-02-01 00:00:00

  • Laser scanning cytometry to quantify gene transfer efficiency and transcriptional activity of EGFP constructs.

    abstract::Enhanced green fluorescent protein (EGFP) is the preferred reporter protein for real-time detection in individual cells, but its usefulness for gene expression quantification is limited by the sensitivity of standard detection techniques. We tested whether the unique feature of single-cell detection and quantification...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/02321st01

    authors: Ferrer-Martínez A,Gomez-Foix AM

    更新日期:2002-01-01 00:00:00

  • CRISPR vs COVID-19: how can gene editing help beat a virus?

    abstract::[Formula: see text] Known to be a sturdy weapon in a scientist's arsenal, how has the gene editing tool CRISPR been applied in the fight against COVID-19? ...

    journal_title:BioTechniques

    pub_type: 新闻

    doi:10.2144/btn-2020-0145

    authors: Straiton J

    更新日期:2020-11-01 00:00:00

  • Method for linking a synthesized protein to its mRNA-DNA complex.

    abstract::A nascent protein remains in a complex with its ribosome and mRNA if the stop codon is deleted from the mRNA. In the same manner, mRNA forms a stable complex with DNA if the transcription termination is blocked. In principle, if both mRNA translation and DNA transcription termination are prevented, the protein should ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/00294st06

    authors: Liu S,Shivashankar GV,Sano T,Libchaber A

    更新日期:2000-10-01 00:00:00

  • Automation of dideoxynucleotide DNA sequencing reactions using a robotic workstation.

    abstract::We report here a system for automation of the dideoxynucleotide DNA sequencing method. The system consists of a Beckman Biomek 1000 robotic workstation which has been modified by the addition of a thin heater/cooler block directly on the instrument table. The heater/cooler block, which is regulated by a user-specified...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Wilson RK,Yuen AS,Clark SM,Spence C,Arakelian P,Hood LE

    更新日期:1988-09-01 00:00:00

  • Antibody-mediated soluble CD14 stabilization prevents agitation-induced increases in presepsin levels in blood component specimens.

    abstract::Presepsin is a 13-kDa N-terminal glycoprotein of CD14. Previously, agitation-induced increases in presepsin levels have been reported; however, the mechanism remains poorly understood. In this study, we aimed to reveal the mechanism of presepsin increase. The agitated plasma or serum was separated using gel exclusion ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2020-0136

    authors: Morino G,Takahashi G,Kan S,Inoue Y,Sato K,Shirakawa K

    更新日期:2021-01-29 00:00:00

  • High-throughput cDNA screening utilizing a low order neural network filter.

    abstract::A low order neural network-based filter was designed as a rapid screening agent for single-spanning transmembrane regions in an integrated informatics system. A rapid screening algorithm was seen as a compromise between costly structure-specific techniques and simple rules that gave a high false-positive rate for cDNA...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/96216bc01

    authors: Huang GM,Farkas J,Hood L

    更新日期:1996-12-01 00:00:00