2D NMR studies of aminoglycoside antibiotics. Use of relayed coherence transfer for 1H resonance assignment and in situ structure elucidation of amikacin derivatives in reaction mixtures.

Abstract:

:Phase-sensitive 2D 1H/1H COSY spectra can be used to identify the structures of individual pure specimens of the aminoglycoside antibiotic amikacin and its N-hemisuccinyl derivatives. However, even at 500 MHz the 2D chemical shift dispersion does not allow for unambiguous assignment of all cross-peaks. By use of 2D relayed coherence transfer experiments (RELAY) optimized to detect two-step 1H/1H scalar interactions in which one of the J-values is small, sufficient additional correlations can be obtained from the frequency-isolated resonances to allow facile tracing of all scalar connectivities. Complete assignments of the 1H NMR spectra of amikacin, its 6'-N-hemisuccinamide, and a novel bis(acylate) [gamma-N-(p-vinylbenzoyl)amikacin 6'-N-hemisuccinamide] were obtained for aqueous media. The NMR spectrum of amikacin free base was also assigned in dimethyl sulfoxide solution. The RELAY experiment can be extended to the analysis of reaction mixtures, which allows for the identification and resonance assignment of regioisomeric amikacin haptens in the mixture state. All of the N-monohemisuccinyl isomers of amikacin have been identified in reaction mixtures through the RELAY experiment. The relative reactivities of the amino functions of amikacin toward acylating agents were found to be 6'-N greater than 3-N equal to or greater than 3"-N equal to or greater than gamma-N. However, this reactivity order is altered after the initial acylation event.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Andersen NH,Eaton HL,Nguyen KT,Hartzell C,Nelson RJ,Priest JH

doi

10.1021/bi00408a019

subject

Has Abstract

pub_date

1988-04-19 00:00:00

pages

2782-90

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

27

pub_type

杂志文章
  • Role of a Water Network around the Mn4CaO5 Cluster in Photosynthetic Water Oxidation: A Fourier Transform Infrared Spectroscopy and Quantum Mechanics/Molecular Mechanics Calculation Study.

    abstract::Photosynthetic water oxidation takes place at the Mn4CaO5 cluster in photosystem II. Around the Mn4CaO5 cluster, a hydrogen bond network is formed by several water molecules, including four water ligands. To clarify the role of this water network in the mechanism of water oxidation, we investigated the effects of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01120

    authors: Nakamura S,Ota K,Shibuya Y,Noguchi T

    更新日期:2016-01-26 00:00:00

  • Cdx1 interacts physically with a subset of Hox proteins.

    abstract::Cdx and Hox gene families encode homeodomain-containing transcription factors involved in anterior-posterior vertebral patterning. Although Cdx proteins are direct transcriptional regulators of Hox gene expression, both Hox and Cdx proteins are known to interact with other homeodomain transcription factors, leading us...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301241q

    authors: Lafontaine CA,Grainger S,Hess BL,Béland M,Lohnes D

    更新日期:2012-12-04 00:00:00

  • Characterization of two major neutral glyceroglucolipids of the human gastric content.

    abstract::Two major neutral glyceroglucolipids (A and B) have been isolated from lipid extract of human gastric content by the procedure involving column fractionation on DEAE-Sephadex, silicic acid, and thin-layer chromatography. Both glycolipids contained glucose, glyceryl ethers, and fatty acids. The structures of these glyc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00637a003

    authors: Slomiany BL,Slomiany A,Glass GB

    更新日期:1977-09-06 00:00:00

  • Photoreactive derivatives of corticotropin. 1. Preparation and chracterization of 2,4-dinitro-5-azidophenylsulfenyl derivative of corticotropin.

    abstract::A photoaffinity probe for corticotropin (ACTH) receptors was prepared by selective modification of the single tryptophan residue in ACTH. A new photoreactive agent, 2,4-dinitro-5-azidophenylsulfenyl chloride, was synthesized and used for introducing the photoreactive group into ACTH. 2,4-Dinitro-5-azidophenylsulfenyl-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00555a027

    authors: Canova-Davis E,Ramachandran J

    更新日期:1980-07-08 00:00:00

  • Reevaluation of the stoichiometry of cytochrome b559 in photosystem II and thylakoid membranes.

    abstract::The stoichiometry of cytochrome b559 (one or two copies) per reaction center of photosystem II (PSII) has been the subject of considerable debate. The molar ratio of cytochrome b559 has a number of significant implications on our understanding of the functional role of cytochrome b559, the mechanism of electron donati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a024

    authors: Buser CA,Diner BA,Brudvig GW

    更新日期:1992-11-24 00:00:00

  • Membrane Docking of the Synaptotagmin 7 C2A Domain: Electron Paramagnetic Resonance Measurements Show Contributions from Two Membrane Binding Loops.

    abstract::The synaptotagmin (Syt) family of proteins plays an important role in vesicle docking and fusion during Ca(2+)-induced exocytosis in a wide variety of cell types. Its role as a Ca(2+) sensor derives primarily from its two C2 domains, C2A and C2B, which insert into anionic lipid membranes upon binding Ca(2+). Syt isofo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00421

    authors: Osterberg JR,Chon NL,Boo A,Maynard FA,Lin H,Knight JD

    更新日期:2015-09-22 00:00:00

  • Ligand migration and binding in nonsymbiotic hemoglobins of Arabidopsis thaliana.

    abstract::We have studied carbon monoxide (CO) migration and binding in the nonsymbiotic hemoglobins AHb1 and AHb2 of Arabidopsis thaliana using Fourier transform infrared (FTIR) spectroscopy combined with temperature derivative spectroscopy (TDS) at cryogenic temperatures. Both proteins have similar amino acid sequences but di...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100768g

    authors: Nienhaus K,Dominici P,Astegno A,Abbruzzetti S,Viappiani C,Nienhaus GU

    更新日期:2010-09-07 00:00:00

  • Role of zinc binding in type A botulinum neurotoxin light chain's toxic structure.

    abstract::Clostridial neurotoxins are zinc endopeptidases, and each contains one Zn(2+)/molecule. To investigate the structural/functional role of Zn(2+) in botulinum neurotoxin light chain (the enzymatic subunit of the neurotoxin), the effect of the removal of zinc on protein folding and enzyme kinetics was investigated. The a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0007472

    authors: Li L,Singh BR

    更新日期:2000-08-29 00:00:00

  • Differential scanning calorimetry study of local anesthetic effects on F1ATPase and submitochondrial particles.

    abstract::The differential scanning calorimetry trace of F1ATPase, prepared from beef heart submitochondrial particles, has a single sharp endothermic transition at 80.5 +/- 1.0 degrees C and a half-height peak width of 2.0 +/- 0.2 degrees. The transition enthalpy is 19 +/- 2 cal/g of protein. Submitochondrial particles (SMP) h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00328a022

    authors: Kresheck GC,Adade AB,Vanderkooi G

    更新日期:1985-03-26 00:00:00

  • Basic and acidic regions flanking the HMG-box domain of maize HMGB1 and HMGB5 modulate the stimulatory effect on the DNA binding of transcription factor Dof2.

    abstract::The chromatin-associated high-mobility group (HMG) proteins of the plant HMGB family are characterized by a central HMG-box domain that is flanked by a basic N-terminal and an acidic C-terminal domain. By functional interaction with certain transcription factors, HMGB proteins contribute to transcriptional regulation....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi6024947

    authors: Grasser M,Christensen JM,Peterhänsel C,Grasser KD

    更新日期:2007-05-29 00:00:00

  • Engineering the zinc binding site of human carbonic anhydrase II: structure of the His-94-->Cys apoenzyme in a new crystalline form.

    abstract::The structure of the His-94-->Cys variant of human carbonic anhydrase II (CAII) has been determined by X-ray crystallographic methods to a resolution of 2.3 A with a final crystallographic R factor of 0.155. This variant of CAII crystallizes in orthorhombic space group P2(1)2(1)2(1) which is the first example of a new...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00057a015

    authors: Alexander RS,Kiefer LL,Fierke CA,Christianson DW

    更新日期:1993-02-16 00:00:00

  • Roles of cysteines in human lecithin:cholesterol acyltransferase.

    abstract::Human lecithin:cholesterol acyltransferase (LCAT, E.C.2.3.1.43) is a serine-type esterase that contains six cysteines, two of which, Cys31 and Cys184, are free. The remaining cysteines form disulfide links. One of these is between Cys50 and Cys74 and the other is between Cys313 and Cys356. The cDNA of LCAT and mutants...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00063a021

    authors: Qu SJ,Fan HZ,Blanco-Vaca F,Pownall HJ

    更新日期:1993-03-30 00:00:00

  • Chemical-enzymatic insertion of an amino acid residue in the reactive site of soybean trypsin inhibitor (Kunitz).

    abstract::Modified (Arg63-Ile64 reactive-site peptide bond hydrolyzed) soybean trypsin inhibitor (Kunitz) with all reactive amino groups, except that of Ile64, protected was described in the preceding paper (Kowalski, D., and Laskowski, M., Jr. (1976), Biochemistry, preceding paper in this issue). Treatment of this inhibitor wi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00651a022

    authors: Kowalski D,Laskowski M Jr

    更新日期:1976-03-23 00:00:00

  • The canine renal parathyroid hormone receptor is a glycoprotein: characterization and partial purification.

    abstract::Covalent labeling of the canine renal parathyroid hormone receptor with [125I]bPTH(1-34) reveals several major binding components that display characteristics consistent with a physiologically relevant adenylate cyclase linked receptor. Through the use of the specific glycosidases neuraminidase and endoglycosidase F a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a044

    authors: Karpf DB,Arnaud CD,King K,Bambino T,Winer J,Nyiredy K,Nissenson RA

    更新日期:1987-12-01 00:00:00

  • Identification of the serine residue phosphorylated by protein kinase C in vertebrate nonmuscle myosin heavy chains.

    abstract::Two-dimensional mapping of the tryptic phosphopeptides generated following in vitro protein kinase C phosphorylation of the myosin heavy chain isolated from human platelets and chicken intestinal epithelial cells shows a single radioactive peptide. These peptides were found to comigrate, suggesting that they were iden...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00218a012

    authors: Conti MA,Sellers JR,Adelstein RS,Elzinga M

    更新日期:1991-01-29 00:00:00

  • Regulation of nonmuscle myosin II by tropomyosin.

    abstract::The actin cytoskeleton carries out cellular functions, including division, migration, adhesion, and intracellular transport, that require a variety of actin binding proteins, including myosins. Our focus here is on class II nonmuscle myosin isoforms, NMIIA, NMIIB, and NMIIC, and their regulation by the actin binding p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500162z

    authors: Barua B,Nagy A,Sellers JR,Hitchcock-DeGregori SE

    更新日期:2014-06-24 00:00:00

  • Physical properties of myosin from aortic smooth muscle.

    abstract::Porcine aortic myosin is a smooth muscle contractile protein similar to its striated muscle counterpart. Electrophoresis in sodium dodecyl sulfate indicates that the molecule consists of three classes of subunits with polypeptide chain molecular weights of 192,000, 19,000, and 15,000. At 277 nm the absorption spectrum...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00576a003

    authors: Frederiksen DW

    更新日期:1979-05-01 00:00:00

  • Conformational changes in the cytoplasmic domain of the Escherichia coli aspartate receptor upon adaptive methylation.

    abstract::By using targeted disulfide cross-linking, we have characterized structural changes that the Escherichia coli aspartate receptor undergoes upon modification of the four specific residues that are reversibly methylated during sensory adaptation. Cysteine residues were introduced at specific positions either in the cyto...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980343y

    authors: Le Moual H,Quang T,Koshland DE Jr

    更新日期:1998-10-20 00:00:00

  • Nativelike intermediate on the unfolding pathway of pig kidney fructose-1,6-bisphosphatase.

    abstract::The unfolding and dissociation of the tetrameric enzyme fructose-1,6-bisphosphatase from pig kidney by guanidine hydrochloride have been investigated at equilibrium by monitoring enzyme activity, ANS binding, intrinsic (tyrosine) protein fluorescence, exposure of thiol groups, fluorescence of extrinsic probes (AEDANS,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034203m

    authors: Reyes AM,Ludwig HC,Yañez AJ,Rodríguez PH,Slebe JC

    更新日期:2003-06-17 00:00:00

  • Characterization of heme-regulated eIF2alpha kinase: roles of the N-terminal domain in the oligomeric state, heme binding, catalysis, and inhibition.

    abstract::Heme-regulated eIF2alpha kinase [heme-regulated inhibitor (HRI)] plays a critical role in the regulation of protein synthesis by heme iron. The kinase active site is located in the C-terminal domain, whereas the N-terminal domain is suggested to regulate catalysis in response to heme binding. Here, we found that the r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060556k

    authors: Miksanova M,Igarashi J,Minami M,Sagami I,Yamauchi S,Kurokawa H,Shimizu T

    更新日期:2006-08-15 00:00:00

  • Phosphonate analogues of carboxypeptidase A substrates are potent transition-state analogue inhibitors.

    abstract::Analogues of tri- and tetrapeptide substrates of carboxypeptidase A in which the scissile peptide linkage is replaced with a phosphonate moiety (-PO2--O-) were synthesized and evaluated as inhibitors of the enzyme. The inhibitors terminated with either L-lactate or L-phenyllactate [designated (O) Ala and (O) Phe, resp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00441a022

    authors: Hanson JE,Kaplan AP,Bartlett PA

    更新日期:1989-07-25 00:00:00

  • Water in the active site of ketosteroid isomerase.

    abstract::Classical molecular dynamics simulations were utilized to investigate the structural and dynamical properties of water in the active site of ketosteroid isomerase (KSI) to provide insight into the role of these water molecules in the enzyme-catalyzed reaction. This reaction is thought to proceed via a dienolate interm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200703y

    authors: Hanoian P,Hammes-Schiffer S

    更新日期:2011-08-09 00:00:00

  • Replication of antibiotic resistance plasmid R6K DNA in vitro.

    abstract::A soluble extract prepared from cells of an Escherichia coli strain carrying the antibiotic resistance plasmid R6K is capable of carrying out the complete process of R6K DNA replication. DNA synthesis in vitro is dependent on the four deoxyribo- and ribonucleotide triphosphates and is sensitive to rifampin and strepto...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00606a017

    authors: Inuzuka M,Helinski DR

    更新日期:1978-06-27 00:00:00

  • Crystal structure of (+)-delta-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis.

    abstract::(+)-Delta-cadinene synthase (DCS) from Gossypium arboreum (tree cotton) is a sesquiterpene cyclase that catalyzes the cyclization of farnesyl diphosphate in the first committed step of the biosynthesis of gossypol, a phytoalexin that defends the plant from bacterial and fungal pathogens. Here, we report the X-ray crys...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900483b

    authors: Gennadios HA,Gonzalez V,Di Costanzo L,Li A,Yu F,Miller DJ,Allemann RK,Christianson DW

    更新日期:2009-07-07 00:00:00

  • Determination of singlet oxygen-specific versus radical-mediated lipid peroxidation in photosensitized oxidation of lipid bilayers: effect of beta-carotene and alpha-tocopherol.

    abstract::Photosensitized oxidation reactions damage tissue by catalyzing the formation of oxyradicals and singlet oxygen. beta-Carotene is hypothesized to exert photoprotective effects by quenching singlet oxygen formed by Type II reactions and by scavenging free radicals formed by Type I reactions. beta-Carotene antioxidant m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9708646

    authors: Stratton SP,Liebler DC

    更新日期:1997-10-21 00:00:00

  • A new pathway for transmembrane electron transfer in photosynthetic reaction centers of Rhodobacter sphaeroides not involving the excited special pair.

    abstract::It is generally accepted that electron transfer in bacterial photosynthesis is driven by the first singlet excited state of a special pair of bacteriochlorophylls (P*). We have examined the first steps of electron transfer in a mutant of the Rhodobacter sphaeroides reaction center in which charge separation from P* is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9703756

    authors: Van Brederode ME,Jones MR,Van Mourik F,Van Stokkum IH,Van Grondelle R

    更新日期:1997-06-10 00:00:00

  • Interfacial and lipid transfer properties of human phospholipid transfer protein: implications for the transfer mechanism of phospholipids.

    abstract::In circulation the phospholipid transfer protein (PLTP) facilitates the transfer of phospholipid-rich surface components from postlipolytic chylomicrons and very low density lipoproteins (VLDL) to HDL and thereby regulates plasma HDL levels. To study the molecular mechanisms involved in PLTP-mediated lipid transfer, w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0621866

    authors: Setälä NL,Holopainen JM,Metso J,Wiedmer SK,Yohannes G,Kinnunen PK,Ehnholm C,Jauhiainen M

    更新日期:2007-02-06 00:00:00

  • Molecular interactions of N-RAP, a nebulin-related protein of striated muscle myotendon junctions and intercalated disks.

    abstract::N-RAP is a recently discovered muscle-specific protein that is concentrated at the myotendon junctions in skeletal muscle and at the intercalated disks in cardiac muscle. The C-terminal half of N-RAP contains a region with sequence homology to nebulin, while a LIM domain is found at its N-terminus. N-RAP is hypothesiz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982395t

    authors: Luo G,Herrera AH,Horowits R

    更新日期:1999-05-11 00:00:00

  • Human endonuclease III acts preferentially on DNA damage opposite guanine residues in DNA.

    abstract::The human endonuclease III homologue (hNTH1) removes premutagenic cytosine damage from DNA. This includes 5-hydroxycytosine, which has increased potential for pairing with adenine, resulting in C --> T transition mutations. Here we report that hNTH1 acts on both 5-hydroxycytosine and abasic sites preferentially when t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0028901

    authors: Eide L,Luna L,Gustad EC,Henderson PT,Essigmann JM,Demple B,Seeberg E

    更新日期:2001-06-05 00:00:00

  • Role of cysteine-82 in the catalytic mechanism of human S-adenosylmethionine decarboxylase.

    abstract::S-Adenosylmethionine decarboxylase is a pyruvate-dependent enzyme. The enzyme forms a Schiff base with substrate, S-adenosylmethionine, through the pyruvoyl moiety. This facilitates the release of CO2 from the substrate, which must then be protonated on the alpha carbon in order to permit hydrolysis of the Schiff base...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9825201

    authors: Xiong H,Stanley BA,Pegg AE

    更新日期:1999-02-23 00:00:00