Replication of antibiotic resistance plasmid R6K DNA in vitro.

Abstract:

:A soluble extract prepared from cells of an Escherichia coli strain carrying the antibiotic resistance plasmid R6K is capable of carrying out the complete process of R6K DNA replication. DNA synthesis in vitro is dependent on the four deoxyribo- and ribonucleotide triphosphates and is sensitive to rifampin and streptolydigin, inhibitors of DNA-dependent RNA polymerase. The incorporation of deoxyribonucleotides into R6K DNA also is sensitive to actinomycin D, novobiocin, arabinofuranosyl-CTP, and N-ethylmaleimide. Kinetics of synthesis are linear for 60 to 120 min. Replication proceeds semiconservatively and supercoiled closed-circular DNA molecules are synthesized. Analysis by alkaline sucrose gradient centrifugation indicated that the early R6K DNA products contain DNA fragments of approximately 18 S in size, corresponding to the length between the R6K alpha origin of replication and the terminus of replication observed in vivo. Addition of exogenous supercoiled R6K DNA is inhibitory to the in vitro system, whereas the addition of R6K DNA in the form of relaxation complex stimulates R6K DNA synthesis to a small extent.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Inuzuka M,Helinski DR

doi

10.1021/bi00606a017

subject

Has Abstract

pub_date

1978-06-27 00:00:00

pages

2567-73

issue

13

eissn

0006-2960

issn

1520-4995

journal_volume

17

pub_type

杂志文章
  • Polymorphism of brain tubulin.

    abstract::Calf brain tubulin was subjected to isoelectric focusing and tryptic peptide map analysis. Results from isoelectric focusing experiments showed a total number of 17 well-resolved protein peaks. The number of peaks and the mass distribution under each peak remained the same when the concentration of protein or ampholyt...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00512a006

    authors: George HJ,Misra L,Field DJ,Lee JC

    更新日期:1981-04-28 00:00:00

  • Detergent-free domain isolated from Xenopus egg plasma membrane with properties similar to those of detergent-resistant membranes.

    abstract::Microdomains known as "rafts" have been isolated from many cell types as detergent-resistant membranes (DRMs) and are enriched in sphingolipids and cholesterol. However, there has been considerable controversy over whether such domains are found in native membranes or are artificially generated by the purification pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026107b

    authors: Luria A,Vegelyte-Avery V,Stith B,Tsvetkova NM,Wolkers WF,Crowe JH,Tablin F,Nuccitelli R

    更新日期:2002-11-05 00:00:00

  • Catalysis of phosphoryl group transfer. The role of divalent metal ions in the hydrolysis of lactic acid O-phenyl phosphate and salicylic acid O-aryl phosphates.

    abstract::The spontaneous hydrolyses of lactic acid O-phenyl phosphate (I) and, to a lesser extent, 3-hydroxybutyric acid O-phenyl phosphate (II) have been investigated and compared with similar intramolecular and bimolecular reactions. Compared to bimolecular nucleophilic reactions, the reactivity of II is similar to other sys...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00682a025

    authors: Steffens JJ,Siewers IJ,Benkovic SJ

    更新日期:1975-06-03 00:00:00

  • A solution NMR investigation into the early events of amelogenin nanosphere self-assembly initiated with sodium chloride or calcium chloride.

    abstract::Using solution-state NMR spectroscopy, new insights into the early events governing amelogenin supramolecular self-assembly have been identified using sodium chloride and calcium chloride to trigger the association. Two-dimensional 1H-15N HSQC spectra were recorded for 15N- and 13C-labeled murine amelogenin as a funct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8018288

    authors: Buchko GW,Tarasevich BJ,Bekhazi J,Snead ML,Shaw WJ

    更新日期:2008-12-16 00:00:00

  • Crystal structure of 3-amino-5-hydroxybenzoic acid (AHBA) synthase.

    abstract::The biosynthesis of ansamycin antibiotics, including rifamycin B, involves the synthesis of an aromatic precursor, 3-amino-5-hydroxybenzoic acid (AHBA), which serves as starter for the assembly of the antibiotics' polyketide backbone. The terminal enzyme of AHBA formation, AHBA synthase, is a dimeric, pyridoxal 5'-pho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990018q

    authors: Eads JC,Beeby M,Scapin G,Yu TW,Floss HG

    更新日期:1999-08-03 00:00:00

  • Effects of Parkinson's disease-linked mutations on the structure of lipid-associated alpha-synuclein.

    abstract::Alpha-synuclein (alphaS) is a lipid-binding synaptic protein of unknown function that is found in an aggregated amyloid fibril form in the intraneuronal Lewy body deposits that are a defining characteristic of Parkinson's disease (PD). Although intrinsically unstructured when free in solution, alphaS adopts a highly h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036135+

    authors: Bussell R Jr,Eliezer D

    更新日期:2004-04-27 00:00:00

  • Investigation of the aggregation and activation of prothrombin using quasi-elastic light scattering.

    abstract::The technique of quasi-elastic light scattering was used to measure the translational diffusion coefficient, D, of purified human prothrombin in buffered aqueous solutions and to monitor for the first time the fragmentation of this protein as it is converted to thrombin. The values of D20,w, measured at two different ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00628a016

    authors: Agarwal GP,Gallagher JG,Aune KC,Armeniades CD

    更新日期:1977-05-03 00:00:00

  • Conformational and aggregational properties of the gene 9 minor coat protein of bacteriophage M13 in membrane-mimicking systems.

    abstract::The membrane-bound state of the gene 9 minor coat protein of bacteriophage M13 was studied in various membrane-mimicking systems, including organic solvents, detergent micelles, and phospholipid bilayers. For this purpose we determined the conformational and aggregational properties of the chemically synthesized prote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981149e

    authors: Houbiers MC,Spruijt RB,Wolfs CJ,Hemminga MA

    更新日期:1999-01-19 00:00:00

  • Solubilization of the carcinogen nickel subsulfide and its interaction with deoxyribonucleic acid and protein.

    abstract::Significant concentrations (1-10 mM) of nickel(II) were found in solution after incubation of the potent carcinogen nickel subsulfide in 0.05 M Tris-HCl, pH 7.4, solutions containing DNA, rat liver microsomes, and NADPH. The presence of NADPH decreased the rate of solubilization of nickel subsulfide. The solubilized n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00533a030

    authors: Lee JE,Ciccarelli RB,Jennette KW

    更新日期:1982-02-16 00:00:00

  • Roles of aquaporin-4 isoforms and amino acids in square array assembly.

    abstract::Aquaporin-4 (AQP4) is a water channel found at high concentrations around blood vessels in the brain and is organized into elaborate assemblies called square arrays. The natural functions of AQP4 and the square arrays remain unknown, but under pathophysiological conditions, AQP4 has been shown to influence brain edema...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802231q

    authors: Strand L,Moe SE,Solbu TT,Vaadal M,Holen T

    更新日期:2009-06-30 00:00:00

  • A host-guest relationship in bone morphogenetic protein receptor-II defines specificity in ligand-receptor recognition.

    abstract::One of the most intriguing questions confronting the bone morphogenetic protein family is the mechanism of ligand recognition, because there are more ligands than receptors. Crystal structures of two type II receptors, ActR-II and BMPR-II, are essentially identical, and a loop structure (A-loop) has been suggested to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3003023

    authors: Yeh LC,Falcon WE,Garces A,Lee JC,Lee JC

    更新日期:2012-09-04 00:00:00

  • Structural analysis of calmodulin binding by nNOS inhibitory amphibian peptides.

    abstract::Calmodulin (CaM) is a ubiquitous protein in nature and plays a regulatory role in numerous biological processes, including the upregulation of nitric oxide (NO) synthesis in vivo. Several peptides that prevent NO production by interacting with CaM have been isolated in the cutaneous secretions of Australian amphibians...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5004124

    authors: Calabrese AN,Bowie JH,Pukala TL

    更新日期:2015-01-20 00:00:00

  • Dissociation of apolipoprotein E oligomers to monomer is required for high-affinity binding to phospholipid vesicles.

    abstract::The apolipoprotein apoE plays a key role in cholesterol and lipid metabolism. There are three isoforms of this protein, one of which, apoE4, is the major risk factor for Alzheimer's disease. At micromolar concentrations all lipid-free apoE isoforms exist primarily as monomers, dimers, and tetramers. However, the molec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1020106

    authors: Garai K,Baban B,Frieden C

    更新日期:2011-04-05 00:00:00

  • Three-dimensional model for the membrane domain of Escherichia coli leader peptidase based on disulfide mapping.

    abstract::We have mapped the interface between the two transmembrane alpha-helices in the membrane domain of the Escherichia coli enzyme leader peptidase by analyzing disulfides formed between pairs of cysteine residues introduced near their respective periplasmic ends. The interface is formed primarily from aliphatic amino aci...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00084a020

    authors: Whitley P,Nilsson L,von Heijne G

    更新日期:1993-08-24 00:00:00

  • The complete amino acid sequence of the major component myoglobin from the arctic minke whale, Balaenoptera acutorostrata.

    abstract::The complete primary structure of the major component myoglobin from the Arctic minke whale, Balaenoptera acutorostrata, was determined by specific cleavage of the protein to obtain large peptides which are readily degraded by the automatic sequencer. Over 80% of the amino acid sequence was established from the three ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00623a023

    authors: Lehman LD,Dwulet FE,Bogardt RA Jr,Jones BN,Gurd FR

    更新日期:1977-02-22 00:00:00

  • Hydrogen-1 and carbon-13 nuclear magnetic resonance of the aromatic residues of fd coat protein.

    abstract::The aromatic residues of fd coat protein in sodium dodecyl sulfate micelles are characterized by 1H and 13C NMR. Resonances from both types of nuclei show structure-induced chemical shift dispersion and line widths indicative of a folded native structure for the protein. The two tyrosines were found to have pKas of 12...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00505a010

    authors: Cross TA,Opella SJ

    更新日期:1981-01-20 00:00:00

  • Circular dichroism and fluorescence studies of homogeneous antibodies to type III pneumococcal polysaccharide.

    abstract::The near-ultraviolet circular dichroism (CD) of three homogeneous anti-type III pneumococcal antibodies in the absence and the presence of the specific hexasaccharide ligand was studied. In addition recombinations and hybridizations of H and L chains derived from two of these antibodies were carried out and the CD spe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00695a013

    authors: Jaton JC,Huser H,Blatt Y,Pecht I

    更新日期:1975-12-02 00:00:00

  • A quantitative index of substrate promiscuity.

    abstract::Catalytic promiscuity is a widespread, but poorly understood, phenomenon among enzymes with particular relevance to the evolution of new functions, drug metabolism, and in vitro biocatalyst engineering. However, there is at present no way to quantitatively measure or compare this important parameter of enzyme function...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701448p

    authors: Nath A,Atkins WM

    更新日期:2008-01-08 00:00:00

  • Relaxation kinetics of glutamate dehydrogenase self-association by pressure perturbation.

    abstract::The kinetics of self-association for beef liver glutamate dehydrogenase (EC 1.4.1.3) have been measured by using pressure perturbation in both the time domain and the frequency domain by monitoring scattered light intensity. The kinetic behavior is entirely consistent with the random self-association model proposed by...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00579a007

    authors: Halvorson HR

    更新日期:1979-06-12 00:00:00

  • Purified native subunits of bacterial luciferase are active in the bioluminescence reaction but fail to assemble into the alpha beta structure.

    abstract::We have expressed the alpha and beta subunits of bacterial luciferase, encoded by luxA and luxB, from separate plasmids in Escherichia coli and developed an efficient purification scheme that yields many milligrams of protein of greater than 90% homogeneity. Earlier experiments showed that subunits synthesized separat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00070a010

    authors: Sinclair JF,Waddle JJ,Waddill EF,Baldwin TO

    更新日期:1993-05-18 00:00:00

  • Correlation of photolabeling with occupancy of cAMP binding sites in the regulatory subunit of cAMP-dependent protein kinase I.

    abstract::Each regulatory subunit of the cAMP-dependent protein kinase contains two in-tandem cAMP binding sites. Photolabeling of holoenzyme I with 8-azidoadenosine 3',5'-monophosphate (8-N3-cAMP) leads to the covalent modification of two residues, Trp-260 and Tyr-371. In order to correlate photolabeling of these two residues ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a035

    authors: Bubis J,Taylor SS

    更新日期:1987-06-16 00:00:00

  • Redesign of cosubstrate specificity and identification of important residues for substrate binding to hChAT.

    abstract::In eukaryotes, choline acetyltransferase (ChAT) catalyzes the reversible formation of the neurotransmitter acetylcholine from choline and acetyl-CoA. ChAT belongs to a family of CoA-dependent enzymes that also includes the carnitine acyltransferases CrAT, CrOT, and CPTs. In contrast to CrOT and CPTs that are very acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1007996

    authors: Green KD,Porter VR,Zhang Y,Garneau-Tsodikova S

    更新日期:2010-07-27 00:00:00

  • The hydrogen-bonding structure in parallel-stranded duplex DNA is reverse Watson-Crick.

    abstract::Raman spectra of the parallel-stranded duplex formed from the deoxyoligonucleotides 5'-d-[(A)10TAATTTTAAATATTT]-3' (D1) and 5'-d[(T)10ATTAAAATTTATAAA]-3' (D2) in H2O and D2O have been acquired. The spectra of the parallel-stranded DNA are then compared to the spectra of the antiparallel double helix formed from the de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00226a012

    authors: Otto C,Thomas GA,Rippe K,Jovin TM,Peticolas WL

    更新日期:1991-03-26 00:00:00

  • Conformationally restricted thrombin inhibitors resistant to proteolytic digestion.

    abstract::A new type of thrombin exo-site inhibitor has been designed with enhanced inhibitory potency and increased metabolic stability. With the aid of the model of the structure of the thrombin-hirudin fragment complex [Yue, S.-Y., DiMaio, J., Szewczuk, Z., Purisima, E. O., Ni, F., & Konishi, Y. (1992) Protein Eng. 5, 77-85]...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00153a004

    authors: Szewczuk Z,Gibbs BF,Yue SY,Purisima EO,Konishi Y

    更新日期:1992-09-29 00:00:00

  • Triple helix formation by (G,A)-containing oligonucleotides: asymmetric sequence effect.

    abstract::Sequence effects on the stability of purine-motif (also called (G, A)-motif) triple helix have been investigated through two symmetry-related systems: one of them had a 5'(GGA)43' core sequence of triplex-forming oligonucleotides (TFOs), whereas the other one had a reversed 5'(AGG)43' core sequence. These (G,A)-contai...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9805588

    authors: Arimondo PB,Barcelo F,Sun JS,Maurizot JC,Garestier T,Hélène C

    更新日期:1998-11-24 00:00:00

  • Thermodynamic characterization of the binding interaction between the histone demethylase LSD1/KDM1 and CoREST.

    abstract::Flavin-dependent histone demethylases catalyze the posttranslational oxidative demethylation of mono- and dimethylated lysine residues, producing formaldehyde and hydrogen peroxide in addition to the corresponding demethylated protein. In vivo, histone demethylase LSD1 (KDM1; BCH110) is a component of the multiprotein...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101776t

    authors: Hwang S,Schmitt AA,Luteran AE,Toone EJ,McCafferty DG

    更新日期:2011-02-01 00:00:00

  • Regulation of the function of eukaryotic DNA topoisomerase I: analysis of the binding step and of the catalytic constants of topoisomerization as a function of DNA topology.

    abstract::It was previously observed that two steps of the reaction of eukaryotic DNA topoisomerase I (topoisomerization and cleavage) depend upon the conformation of the DNA substrate: in both instances the supercoiled form is a more efficient substrate than the relaxed one. This paper reports the analysis of two other steps o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00487a024

    authors: Caserta M,Amadei A,Camilloni G,Di Mauro E

    更新日期:1990-09-04 00:00:00

  • Investigation of the active site cysteine residue of rat liver mitochondrial aldehyde dehydrogenase by site-directed mutagenesis.

    abstract::To determine the active site cysteine residue in aldehyde dehydrogenase, we mutated amino acid residues 49, 162, and 302 of recombinantly expressed rat liver mitochondrial (class 2) aldehyde dehydrogenase. The C49A and C162A mutants were fully active tetrameric enzymes, although the C162A mutant was found to be highly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00008a025

    authors: Farrés J,Wang TT,Cunningham SJ,Weiner H

    更新日期:1995-02-28 00:00:00

  • Transcriptional regulation of the nuclear gene encoding the alpha-subunit of the mammalian mitochondrial F1F0 ATP synthase complex: role for the orphan nuclear receptor, COUP-TFII/ARP-1.

    abstract::Our laboratory has been studying the transcriptional regulation of the nuclear gene (ATPA) that encodes the alpha-subunit of the mammalian mitochondrial F1F0 ATP synthase complex. We have previously determined that the regulatory factor, upstream stimulatory factor 2 (USF2), can stimulate transcription of the ATPA gen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0268347

    authors: Jordan EM,Worley T,Breen GA

    更新日期:2003-03-11 00:00:00

  • Role of Gly117 in the cation/melibiose symport of MelB of Salmonella typhimurium.

    abstract::The melibiose permease of Salmonella typhimurium (MelB(St)) catalyzes symport of melibiose with Na(+), Li(+), or H(+), and bioinformatics analysis indicates that a conserved Gly117 (helix IV) is part of the Na(+)-binding site. We mutated Gly117 to Ala, Pro, Trp, or Arg; the effects on melibiose transport and binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300230h

    authors: Guan L,Jakkula SV,Hodkoff AA,Su Y

    更新日期:2012-04-03 00:00:00