DetexNet: Accurately Diagnosing Frequent and Challenging Pediatric Malignant Tumors.

Abstract:

:The most frequent extracranial solid tumors of childhood, named peripheral neuroblastic tumors (pNTs), are very challenging to diagnose due to their diversified categories and varying forms. Auxiliary diagnosis methods of such pediatric malignant cancers are highly needed to provide pathologists assistance and reduce the risk of misdiagnosis before treatments. In this paper, inspired by the particularity of microscopic pathology images, we integrate neural networks with the texture energy measure (TEM) and propose a novel network architecture named DetexNet (deep texture network). This method enforces the low-level representation pattern clearer via embedding the expert knowledge as prior, so that the network can seize the key information of a relatively small pathological dataset more smoothly. By applying and finetuning TEM filters in the bottom layer of a network, we greatly improve the performance of the baseline. We further pre-train the model on unlabeled data with an auto-encoder architecture and implement a color space conversion on input images. Two kinds of experiments under different assumptions in the condition of limited training data are performed, and in both of them, the proposed method achieves the best performance compared with other state-of-the-art models and doctor diagnosis.

journal_name

IEEE Trans Med Imaging

authors

Liu Y,Yin M,Sun S

doi

10.1109/TMI.2020.3027547

subject

Has Abstract

pub_date

2021-01-01 00:00:00

pages

395-404

issue

1

eissn

0278-0062

issn

1558-254X

journal_volume

40

pub_type

杂志文章
  • Choice of initial conditions in the ML reconstruction of fan-beam transmission with truncated projection data.

    abstract::We investigate the effects of initial conditions in the iterative maximum-likelihood (ML) reconstruction of fan-beam transmission projection data with truncation. In an iterative ML reconstruction, the estimate of the transmission reconstructed image in the previous iteration is multiplied by some factors to obtain th...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.611352

    authors: Pan TS,Tsui BM,Byrne CL

    更新日期:1997-08-01 00:00:00

  • Establishment of an Automated Algorithm Utilizing Optical Coherence Tomography and Micro-Computed Tomography Imaging to Reconstruct the 3-D Deformed Stent Geometry.

    abstract::Percutaneous coronary intervention (PCI) is the prevalent treatment for coronary artery disease, with hundreds of thousands of stents implanted annually. Computational studies have demonstrated the role of biomechanics in the failure of vascular stents, but clinical studies is this area are limited by a lack of unders...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2018.2870714

    authors: Elliott MR,Kim D,Molony DS,Morris L,Samady H,Joshi S,Timmins LH

    更新日期:2019-03-01 00:00:00

  • A characterization of the geometric architecture of the peritalar joint complex via MRI: an aid to the classification of foot type.

    abstract::The purpose of this work is to study the architecture of the rearfoot using in vivo MR image data. Each data set used in this study is made of sixty sagittal slices of the foot acquired in a 1.5-T commercial GE MR system. We use the live-wire method to delineate boundaries and form the surfaces of the bones. In the fi...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.802753

    authors: Stindel E,Udupa JK,Hirsch BE,Odhner D

    更新日期:1999-09-01 00:00:00

  • Blind color decomposition of histological images.

    abstract::Cancer diagnosis is based on visual examination under a microscope of tissue sections from biopsies. But whereas pathologists rely on tissue stains to identify morphological features, automated tissue recognition using color is fraught with problems that stem from image intensity variations due to variations in tissue...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2239655

    authors: Gavrilovic M,Azar JC,Lindblad J,Wahlby C,Bengtsson E,Busch C,Carlbom IB

    更新日期:2013-06-01 00:00:00

  • Electrical impedance spectroscopy of the breast: clinical imaging results in 26 subjects.

    abstract::Electrical impedance spectroscopy (EIS) is a potential, noninvasive technique to image women for breast cancer. Studies have shown characteristic frequency dispersions in the electrical conductivity and permittivity of malignant versus normal tissue. Using a multifrequency EIS system, we imaged the breasts of 26 women...

    journal_title:IEEE transactions on medical imaging

    pub_type: 临床试验,杂志文章

    doi:10.1109/tmi.2002.800606

    authors: Kerner TE,Paulsen KD,Hartov A,Soho SK,Poplack SP

    更新日期:2002-06-01 00:00:00

  • Estimating the Accuracy Level Among Individual Detections in Clustered Microcalcifications.

    abstract::Computerized detection of clustered microcalcifications (MCs) in mammograms often suffers from the occurrence of false positives (FPs), which can vary greatly from case to case. We investigate how to apply statistical estimation to determine the number of FPs that are present in a detected MC lesion. First, we describ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2654799

    authors: Sainz de Cea MV,Nishikawa RM,Yang Y

    更新日期:2017-05-01 00:00:00

  • Multi-channel microstrip transceiver arrays using harmonics for high field MR imaging in humans.

    abstract::Radio-frequency (RF) transceiver array design using primary and higher order harmonics for in vivo parallel magnetic resonance imaging imaging (MRI) and spectroscopic imaging is proposed. The improved electromagnetic decoupling performance, unique magnetic field distributions and high-frequency operation capabilities ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2011.2166273

    authors: Wu B,Wang C,Lu J,Pang Y,Nelson SJ,Vigneron DB,Zhang X

    更新日期:2012-02-01 00:00:00

  • Computer-assisted scan protocol and reconstruction (CASPAR)-reduction of image noise and patient dose.

    abstract::X-ray computed tomography is a powerful medical imaging device. It allows high-resolution 3-D visualization of the human body. However, one drawback is the health risk associated with ionizing radiation. Simply downscaling the radiation intensities over the entire scan results in increased quantum noise. This paper pr...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2009.2034515

    authors: Sperl J,Beque D,Claus B,De Man B,Senzig B,Brokate M

    更新日期:2010-03-01 00:00:00

  • A Signal Acquisition Setup for Ultrashort Echo Time Imaging Operating in Parallel on Unmodified Clinical MRI Scanners Achieving an Acquisition Delay of [Formula: see text].

    abstract::Ultrashort echo time imaging on clinical systems is still limited by the rather long radio frequency switching times achievable with standard front end concepts. In this contribution, an independent parallel receive-only system is interfaced to an unmodified clinical MRI system, enabling imaging of species with ultras...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2924057

    authors: Eder M,Horneff A,Paul J,Storm A,Wunderlich A,Hell E,Ulrici J,Anders J,Rasche V

    更新日期:2020-01-01 00:00:00

  • Spatio-temporal fMRI analysis using Markov random fields.

    abstract::Functional magnetic resonance images (fMRI's) provide high-resolution datasets which allow researchers to obtain accurate delineation and sensitive detection of activation areas involved in cognitive processes. To preserve the resolution of this noninvasive technique, refined methods are required in the analysis of th...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.746636

    authors: Descombes X,Kruggel F,von Cramon DY

    更新日期:1998-12-01 00:00:00

  • A geometry-driven optical flow warping for spatial normalization of cortical surfaces.

    abstract::Spatial normalization is frequently used to map data to a standard coordinate system by removing intersubject morphological differences, thereby allowing for group analysis to be carried out. The work presented in this paper is motivated by the need for an automated cortical surface normalization technique that will a...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2008.925080

    authors: Tosun D,Prince JL

    更新日期:2008-12-01 00:00:00

  • Interactive CT-video registration for the continuous guidance of bronchoscopy.

    abstract::Bronchoscopy is a major step in lung cancer staging. To perform bronchoscopy, the physician uses a procedure plan, derived from a patient's 3D computed-tomography (CT) chest scan, to navigate the bronchoscope through the lung airways. Unfortunately, physicians vary greatly in their ability to perform bronchoscopy. As ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2252361

    authors: Merritt SA,Khare R,Bascom R,Higgins WE

    更新日期:2013-08-01 00:00:00

  • The adaptive bases algorithm for intensity-based nonrigid image registration.

    abstract::Nonrigid registration of medical images is important for a number of applications such as the creation of population averages, atlas-based segmentation, or geometric correction of functional magnetic resonance imaging (fMRI) images to name a few. In recent years, a number of methods have been proposed to solve this pr...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2003.819299

    authors: Rohde GK,Aldroubi A,Dawant BM

    更新日期:2003-11-01 00:00:00

  • Robust parameter estimation of intensity distributions for brain magnetic resonance images.

    abstract::This paper presents two new methods for robust parameter estimation of mixtures in the context of magnetic resonance (MR) data segmentation. The head is constituted of different types of tissue that can be modeled by a finite mixture of multivariate Gaussian distributions. Our goal is to estimate accurately the statis...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.700730

    authors: Schroeter P,Vesin JM,Langenberger T,Meuli R

    更新日期:1998-04-01 00:00:00

  • Analysis of the role of lead resistivity in specific absorption rate for deep brain stimulator leads at 3T MRI.

    abstract::Magnetic resonance imaging (MRI) on patients with implanted deep brain stimulators (DBSs) can be hazardous because of the antenna-effect of leads exposed to the incident radio-frequency field. This study evaluated electromagnetic field and specific absorption rate (SAR) changes as a function of lead resistivity on an ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2010.2040624

    authors: Angelone LM,Ahveninen J,Belliveau JW,Bonmassar G

    更新日期:2010-04-01 00:00:00

  • Joint Design of Excitation k-Space Trajectory and RF Pulse for Small-Tip 3D Tailored Excitation in MRI.

    abstract::We propose a new method for the joint design of k-space trajectory and RF pulse in 3D small-tip tailored excitation. Designing time-varying RF and gradient waveforms for a desired 3D target excitation pattern in MRI poses a non-linear, non-convex, constrained optimization problem with relatively large problem size tha...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2478880

    authors: Hao S,Fessler JA,Noll DC,Nielsen JF

    更新日期:2016-02-01 00:00:00

  • Motion estimation of skeletonized angiographic images using elastic registration.

    abstract::An approach for estimating the motion of arteries in digital angiographic image sequences is proposed. Binary skeleton images are registered using an elastic registration algorithm in order to estimate the motion of the corresponding arteries. This algorithm operates recursively on the skeleton images by considering a...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.310876

    authors: Tom BS,Efstratiadis SN,Katsaggelos AK

    更新日期:1994-01-01 00:00:00

  • Spatio-Temporal Tensor Decomposition of a Polyaffine Motion Model for a Better Analysis of Pathological Left Ventricular Dynamics.

    abstract::Given that heart disease can cause abnormal motion dynamics over the cardiac cycle, understanding and quantifying cardiac motion can provide insight for clinicians to aid with diagnosis, therapy planning, and determining prognosis. The goal of this paper is to extract population-specific motion patterns from 3D displa...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2015.2405579

    authors: McLeod K,Sermesant M,Beerbaum P,Pennec X

    更新日期:2015-07-01 00:00:00

  • Spatial transformation of DWI data using non-negative sparse representation.

    abstract::This paper presents an algorithm to transform and reconstruct diffusion-weighted imaging (DWI) data for alignment of micro-structures in association with spatial transformations. The key idea is to decompose the diffusion signal profile, a function defined on a unit sphere, into a series of weighted diffusion basis fu...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2012.2204766

    authors: Yap PT,Shen D

    更新日期:2012-11-01 00:00:00

  • A backprojection filtering algorithm for a spatially varying focal length collimator.

    abstract::Fan-beam collimators are used in single photon emission computed tomography to improve the sensitivity for imaging of small organs. The disadvantage of fan-beam collimation is the truncation of projection data surrounding the organ of interest or, in those cases of imaging large patients, of the organ itself producing...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.310886

    authors: Zeng GL,Gullberg GT

    更新日期:1994-01-01 00:00:00

  • ERS transform for the automated detection of bronchial abnormalities on CT of the lungs.

    abstract::The identification of bronchi on Computed Tomography (CT) images of the lungs provides valuable clinical information in patients with suspected airways diseases including bronchiectasis, emphysema, or constrictive obliterative bronchiolitis. The automated recognition of the airways is, therefore, an important part of ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.952731

    authors: Chabat F,Hu XP,Hansell DM,Yang GZ

    更新日期:2001-09-01 00:00:00

  • Hybrid feature-based diffeomorphic registration for tumor tracking in 2-D liver ultrasound images.

    abstract::Real-time ultrasound image acquisition is a pivotal resource in the medical community, in spite of its limited image quality. This poses challenges to image registration methods, particularly to those driven by intensity values. We address these difficulties in a novel diffeomorphic registration technique for tumor tr...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2262055

    authors: Cifor A,Risser L,Chung D,Anderson EM,Schnabel JA

    更新日期:2013-09-01 00:00:00

  • Automated characterization of breast lesions imaged with an ultrafast DCE-MR protocol.

    abstract::Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) of the breast has become an invaluable tool in the clinical work-up of patients suspected of having breast carcinoma. The purpose of this study is to introduce novel features extracted from the kinetics of contrast agent uptake imaged by a short (100 s) vi...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2281984

    authors: Platel B,Mus R,Welte T,Karssemeijer N,Mann R

    更新日期:2014-02-01 00:00:00

  • Ultra fast symmetry and SIMD-based projection-backprojection (SSP) algorithm for 3-D PET image reconstruction.

    abstract::Remarkable progress in positron emission tomography (PET) development has occurred in recent years, in hardware, software, and computer implementation of image reconstruction. Recent development in PET scanners such as the high-resolution research tomograph (HRRT) developed by CTI (now Siemens) represents such a case ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/tmi.2007.892644

    authors: Hong IK,Chung ST,Kim HK,Kim YB,Son YD,Cho ZH

    更新日期:2007-06-01 00:00:00

  • MRF-based deformable registration and ventilation estimation of lung CT.

    abstract::Deformable image registration is an important tool in medical image analysis. In the case of lung computed tomography (CT) registration there are three major challenges: large motion of small features, sliding motions between organs, and changing image contrast due to compression. Recently, Markov random field (MRF)-b...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2246577

    authors: Heinrich MP,Jenkinson M,Brady M,Schnabel JA

    更新日期:2013-07-01 00:00:00

  • Camera augmented mobile C-arm (CAMC): calibration, accuracy study, and clinical applications.

    abstract::Mobile C-arm is an essential tool in everyday trauma and orthopedics surgery. Minimally invasive solutions, based on X-ray imaging and coregistered external navigation created a lot of interest within the surgical community and started to replace the traditional open surgery for many procedures. These solutions usuall...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2009.2021947

    authors: Navab N,Heining SM,Traub J

    更新日期:2010-07-01 00:00:00

  • Strain Energy Decay Predicts Elastic Registration Accuracy from Intraoperative Data Constraints.

    abstract::Image-guided intervention for soft tissue organs depends on the accuracy of deformable registration methods to achieve effective results. While registration techniques based on elastic theory are prevalent, no methods yet exist that can prospectively estimate registration uncertainty to regulate sources and mitigate c...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2021.3052523

    authors: Heiselman JS,Miga MI

    更新日期:2021-01-18 00:00:00

  • Simultaneous MR-compatible emission and transmission imaging for PET using time-of-flight information.

    abstract::Quantitative positron emission tomography (PET) imaging relies on accurate attenuation correction. Predicting attenuation values from magnetic resonance (MR) images is difficult because MR signals are related to proton density and relaxation properties of tissues. Here, we propose a method to derive the attenuation ma...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2012.2198831

    authors: Mollet P,Keereman V,Clementel E,Vandenberghe S

    更新日期:2012-09-01 00:00:00

  • Co-registration of white matter tractographies by adaptive-mean-shift and Gaussian mixture modeling.

    abstract::In this paper, we present a robust approach to the registration of white matter tractographies extracted from diffusion tensor-magnetic resonance imaging scans. The fibers are projected into a high dimensional feature space based on the sequence of their 3-D coordinates. Adaptive mean-shift clustering is applied to ex...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2009.2029097

    authors: Zvitia O,Mayer A,Shadmi R,Miron S,Greenspan HK

    更新日期:2010-01-01 00:00:00

  • Segmentation of prostate boundaries from ultrasound images using statistical shape model.

    abstract::This paper presents a statistical shape model for the automatic prostate segmentation in transrectal ultrasound images. A Gabor filter bank is first used to characterize the prostate boundaries in ultrasound images in both multiple scales and multiple orientations. The Gabor features are further reconstructed to be in...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2003.809057

    authors: Shen D,Zhan Y,Davatzikos C

    更新日期:2003-04-01 00:00:00