Performance of distance-based DNA barcoding in the molecular identification of primates.

Abstract:

:For comparative primatology proper recognition of basal taxa (i.e. species) is indispensable, and in this the choice of a suitable gene with high phylogenetic resolution is crucial. For the goals of species identification in animals, the cytochrome c oxidase subunit 1 (cox1) has been introduced as standard marker. Making use of the difference in intra- and interspecific genetic variation--the DNA barcoding gap--cox1 can be used as a fast and accurate marker for the identification of animal species. For the Order Primates we compare the performance of cox1 (166 sequences; 50 nominal species) in species-identification with that of two other mitochondrial markers, 16S ribosomal RNA (412 sequences, 92 species) and cytochrome b (cob: 547 sequences, 72 species). A wide gap exist between intra- and interspecific divergences for both cox1 and cob genes whereas this gap is less apparent for 16S, indicating that rRNA genes are less suitable for species delimitation in DNA barcoding. For those species where multiple sequences are available there are significant differences in the intraspecific genetic distances between different mitochondrial markers, without, however, showing a consistent pattern. We conclude that cox1 allows accurate differentiation of species and as such DNA barcoding may have an important role to play in comparative primatology.

journal_name

C R Biol

journal_title

Comptes rendus biologies

authors

Nijman V,Aliabadian M

doi

10.1016/j.crvi.2009.10.003

subject

Has Abstract

pub_date

2010-01-01 00:00:00

pages

11-6

issue

1

eissn

1631-0691

issn

1768-3238

pii

S1631-0691(09)00250-9

journal_volume

333

pub_type

杂志文章
  • Causality in medicine.

    abstract::This article is the result of a symposium organized at the French Academy of Sciences on May 31, 2016, entitled: Do we need to know the causes to understand and intervene? Questions on causality in the biological and medical sciences, and published in French in a book entitled: Causality in the biological and medical ...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章,评审

    doi:10.1016/j.crvi.2019.03.001

    authors: Bach JF

    更新日期:2019-01-01 00:00:00

  • Identification and expression of an atypical isoform of metallothionein in the African clawed frog Xenopus laevis.

    abstract::Exploiting the annotation of the western clawed frog Silurana tropicalis genome, we identified a new metallothionein (MT) gene, exhibiting all the features to be considered an active gene, but with an atypical coding region, showing only 17 cysteine residues instead of the canonical 20 cysteines of vertebrate metallot...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2015.03.011

    authors: Scudiero R,Tussellino M,Carotenuto R

    更新日期:2015-05-01 00:00:00

  • [Assessment of a new hotspot for plant biodiversity in the Mediterranean basin (North Africa)].

    abstract::The concept of biodiversity hotspot at the regional and global scale has contributed to the improvement of the conservation strategies. The need for precise evaluation is often hampered by lapses of knowledge in some Mediterranean regional hotspots. The objective of the present work is to analyse the diversity of ende...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2007.04.006

    authors: Véla E,Benhouhou S

    更新日期:2007-08-01 00:00:00

  • Parthenogenetic reproduction demonstrated in the diploid Spasalus puncticollis (Le Peletier & Serville 1825), n. stat., from the Antilles (Coleoptera, Scarabaeoidea, Passalidae).

    abstract::Only females were observed in Spasalus crenatus (Mac Leay 1819) in the Antilles, from Puerto Rico to Saint-Vincent, whereas both sexes are in Trinidad and on the continent. No difference in endo- and ectodermic female genitalia could be noticed between the two populations. Chromosomes of specimens from Guadeloupe reve...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2015.09.001

    authors: Boucher S,Dutrillaux AM,Dutrillaux B

    更新日期:2015-11-01 00:00:00

  • Investigation of the ultrastructure of Dendrocoelum constrictum (Platyhelminthes, Tricladida) spermatogenesis and mature spermatozoa.

    abstract::To add to our understanding of dendrocoelid spermatozoa and to describe additional phylogenetic characters, the ultrastructure of the testis was investigated in the subterranean freshwater planarian Dendrocoelum constrictum. This is the first study investigating spermatogenesis and spermatozoon ultrastructure in a sub...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2014.07.004

    authors: Harrath AH,Gammoudi M,Mansour L,Ahmed M,Sirotkin AV,Al Omar SY,Ibrahim KE,Alwasel SH

    更新日期:2014-09-01 00:00:00

  • Genetic diversity analysis of wild close relatives of barley from Tibet and the Middle East by ISSR and SSR markers.

    abstract::The genetic diversity analysis of 90 barley samples, including 45 wild close relatives of barley from the Tibet region of China and 45 wild accessions from different countries throughout the Middle East, were carried out using ISSR and SSR markers. The results showed that Tibetan wild close relatives of barley had a h...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2008.11.007

    authors: Wang A,Yu Z,Ding Y

    更新日期:2009-04-01 00:00:00

  • [Parasitological profile of two forms of schistosomiasis (urinary and intestinal forms) at ten sites in Burkina Faso (Sub-Saharan Africa country)].

    abstract::In spite of great progress in schistosomiasis control during the last decade in Burkina Faso, this disease remains a public health concern in the country. Indeed, our study consisted of the analysis of parasitological data related to Schistosoma haematobium and Schistosoma mansoni and in malacological investigations. ...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2013.04.014

    authors: Zongo D,Kabre BG,Dayeri D,Savadogo B,Poda JN

    更新日期:2013-05-01 00:00:00

  • Discrimination through silk recognition: the case of the two-spotted spider mite Tetranychus urticae.

    abstract::Choosing a suitable habitat is a main step in the settlement process, particularly for species having weak movement abilities. Reliable cues are thus needed for habitat selection. In silk-spinning arthropods, silk can be used as a social cue to select an appropriate location. Silk can also provide information on the p...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2012.07.001

    authors: Clotuche G,Deneubourg JL,Mailleux AC,Detrain C,Hance T

    更新日期:2012-08-01 00:00:00

  • Evaluation of cadmium, lead and metallothionein contents in the tissues of mussels (Mytilus galloprovincialis) from the Campania coast (Italy): levels and seasonal trends.

    abstract::The biological effect of seasonality on cadmium, lead and metallothionein contents was assessed in mussels Mytilus galloprovincialis from natural banks located along the coastline of the Gulf of Naples (Campania, Italy). Heavy metals and metallothionein concentrations were measured in digestive and reproductive glands...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2014.05.003

    authors: Scudiero R,Cretì P,Trinchella F,Grazia Esposito M

    更新日期:2014-07-01 00:00:00

  • [A new species of wild mice on the Island of Cyprus].

    abstract::A mitochondrial and nuclear gene analysis allowed us to precise the taxonomical position of the two sympatric species of mice known to be present on Cyprus. One of them is the commensal house mouse M. m. domesticus, and the other revealed to be a new taxon that is a sister species of M. spicilegus and M. macedonicus. ...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2004.03.001

    authors: Bonhomme F,Orth A,Cucchi T,Hadjisterkotis E,Vigne JD,Auffray JC

    更新日期:2004-05-01 00:00:00

  • A euryhaline fish, lost in the desert: The unexpected metapopulation structure of Coptodon guineensis (Günther, 1862) in the Sebkha of Imlili.

    abstract::Euryhaline Cichlid fish of the species Coptodon guineensis are present in different water holes situated in a dried depression in the desert in the extreme South of Morocco, the Sebkha of Imlili. A genetic survey of this population, using complete sequences of the ND2 gene (mtDNA) and sixteen microsatellite loci, reve...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2018.01.002

    authors: Agnèse JF,Louizi H,Gilles A,Berrada Rkhami O,Benhoussa A,Qninba A,Pariselle A

    更新日期:2018-02-01 00:00:00

  • Does coverage matter at mesoscale within a Posidonia oceanica seagrass meadow?

    abstract::Despite the fact that coverage is one of the most widely used descriptors for seagrass meadows, the spatial structure of coverage at mesoscale has not often been taken into account. The present work investigates the structure of P. oceanica coverage at mesoscale and its possible relationship with several factors (dept...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2006.05.001

    authors: Leriche A,Boudouresque CF,Gravez V,Mayot N

    更新日期:2006-09-01 00:00:00

  • Potential for individual recognition in acoustic signals: a comparative study of two gulls with different nesting patterns.

    abstract::We test relationships between structure of acoustic signal used for individual recognition and nesting ecology among two gulls: the black-headed gull (Larus ridibundus), in which chicks remain in the nest, and the slender-billed gull (L. genei), in which chicks leave the nest after hatching to form crèches. A striking...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/s1631-0691(03)00072-6

    authors: Mathevon N,Charrier I,Jouventin P

    更新日期:2003-03-01 00:00:00

  • Evaluation of the genetic trend of milk yield in the multiple ovulation and embryo transfer populations of dairy cows, using stochastic simulation.

    abstract::Stochastic modeling of dairy cattle populations using multiple ovulation and embryo transfer (MOET) was used to compare 15-year genetic responses with an artificial insemination (AI) program. MOET and AI techniques were simulated in four populations, two with 100 breeding females each and two with 400 breeding females...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2010.07.001

    authors: Hossein-Zadeh NG

    更新日期:2010-10-01 00:00:00

  • [The domestication of Penicillium cheese fungi].

    abstract::Domestication is the process of organism evolution under selection by humans, and as such has been a model for studying adaptation since Charles Darwin. Here we review recent studies on the genomics of adaptation and domestication syndrome in two cheese-making fungal lineages, Penicillium roqueforti used for maturing ...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章,评审

    doi:10.5802/crbiol.15

    authors: Ropars J,Caron T,Lo YC,Bennetot B,Giraud T

    更新日期:2020-10-09 00:00:00

  • Penetration of resveratrol into bovine aortic endothelial cells (BAEC): a possible passive diffusion.

    abstract::Several studies have demonstrated that, in a context of oxidative stress, resveratrol, a polyphenol found in wine, could act as a protective agent on endothelial cells by various mechanisms but without showing that it could penetrate inside the cell. The aim of this study was to detect for the first time resveratrol i...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2012.03.013

    authors: Frombaum M,Le Clanche S,Thérond P,Nubret E,Bonnefont-Rousselot D,Borderie D

    更新日期:2012-04-01 00:00:00

  • Highly efficient protocol for callogenesis, somagenesis and regeneration of Indica rice plants.

    abstract::In the present study, we have reported a simple, fast and efficient regeneration protocol using mature embryos as explants, and discovered its effective applicability to a range of Indica rice genotypes. We have considered the response of six varieties in the steps of the regeneration procedure. The results showed tha...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2015.04.004

    authors: Azizi P,Rafii MY,Mahmood M,Hanafi MM,Abdullah SN,Abiri R,Sahebi M

    更新日期:2015-07-01 00:00:00

  • Cell cycle progression.

    abstract::In this paper we consider cell cycle models for which the transition operator for the evolution of birth mass density is a simple, linear dynamical system with a stochastic perturbation. The convolution model for a birth mass distribution is presented. Density functions of birth mass and tail probabilities in n-th gen...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章,评审

    doi:10.1016/j.crvi.2003.05.002

    authors: Tyrcha J

    更新日期:2004-03-01 00:00:00

  • [Cell therapy for inherited diseases of the hematopoietic system].

    abstract::Cell therapy was born in 1968 with the first allogeneic transplantation of hematopoietic stem cells for two immune deficiency disorders: the Wiskott-Aldrich syndrome and the Severe Combined ImmunoDeficiency (SCID). From this pioneering experience, thousands of patients affected with inherited or acquired diseases of t...

    journal_title:Comptes rendus biologies

    pub_type: 历史文章,杂志文章,评审

    doi:10.1016/j.crvi.2007.04.003

    authors: Cavazzana-Calvo M,Dal-Cortivo L,André-Schmutz I,Hacein-Bey Abina S,Fischer A

    更新日期:2007-06-01 00:00:00

  • Dynamic topology of the cephalochordate to amniote morphological transition: a self-organized system of Russian dolls.

    abstract::This note presents a mechanistic explanation of the transition between the morphology of cephalochordates to that of amniotes. By a careful study of the morphogenetic movements which occur during the early stages of development of a typical amniote (a chicken embryo), we are able to show that the formation of a verteb...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2010.11.009

    authors: Fleury V

    更新日期:2011-02-01 00:00:00

  • [Inflammation in the perivascular adipose tissue and atherosclerosis].

    abstract::In atherosclerosis studies, there are few data, especially in men, on the biology of perivascular adipose tissue (PVAT) compared to that of other adipose tissue (AT), on amendments in obesity, and its possible role in the development of atherosclerosis. We conducted an ex vivo human study on pericarotid adipose tissue...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2017.01.001

    authors: Hamlat-Khennaf N,Neggazi S,Ayari H,Feugier P,Bricca G,Aouichat-Bouguerra S,Beylot M

    更新日期:2017-03-01 00:00:00

  • A novel hypothalamic neuroendocrine peptide: URP (urotensin-II-related peptide)?

    abstract::Urotensin-II-related peptide (URP) is an eight-amino-acid peptide recently isolated from rat brain and considered as the endogenous ligand for the urotensin-II receptor. Immunohistochemical treatment of mouse brain sections with anti-URP antibodies revealed numerous immunopositive fibres in the median eminence and vas...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2005.06.002

    authors: Egginger JG,Calas A

    更新日期:2005-08-01 00:00:00

  • Aminoglycosides and other factors promoting stop codon readthrough in human cells.

    abstract::Enhanced stop codon readthrough is a potential treatment strategy for diseases caused by nonsense mutations. Here, we compare readthrough levels induced by three types of factors: aminoglycoside antibiotics, suppressor tRNAs, and factors decreasing translation termination efficiency. We show that the highest levels of...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2006.09.001

    authors: Diop D,Chauvin C,Jean-Jean O

    更新日期:2007-01-01 00:00:00

  • A new high-elevation scorpion species of the genus Scorpiops Peters, 1861 (Scorpiones: Euscorpiidae: Scorpiopinae) from the Himalayas, India.

    abstract::A new high-elevation scorpion species of the genus Scorpiops is described from the Indian state of Himachal Pradesh. Scorpiops spitiensis sp. nov. is the second highest-elevation scorpion species in Asia and the first one from India occurring at elevations above 4200 m. The new species closely resembles Scorpiops pete...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2014.04.004

    authors: Zambre A,Sanap RV,Mirza ZA

    更新日期:2014-06-01 00:00:00

  • Territorial aggressiveness and predation: two possible origins of snapping in the ant Plectroctena minor.

    abstract::Plectroctena minor workers have long mandibles that can snap and deliver a sharp blow to intruders or prey, stunning or killing them. Encounters between homocolonial P. minor workers separated for 24 h or 15 days never resulted in snapping, while this behaviour was always noted during encounters between heterocolonial...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/s1631-0691(02)01484-1

    authors: Dejean A,Suzzoni JP,Schatz B,Orivel J

    更新日期:2002-07-01 00:00:00

  • Alterations in brain morphology and HSP70 expression in lizard embryos exposed to thermal stress.

    abstract::The teratogenic effects of thermal stress were studied in the oviparous Italian wall lizard Podarcis sicula. To this purpose, the eggs were exposed to continuous or temporary cold (15°C) or warm (30°C) stresses and the effects were analysed at the cytological and molecular levels. The results demonstrated the lethalit...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2016.07.002

    authors: Simoniello P,Esposito MG,Trinchella F,Motta CM,Scudiero R

    更新日期:2016-09-01 00:00:00

  • The neurobiology of temporal lobe epilepsy: too much information, not enough knowledge.

    abstract::Although there are many types of epilepsy of both genetic and acquired forms, temporal lobe epilepsy (TLE) with hippocampal sclerosis is probably the single most common human epilepsy, and the one most intensely studied. Despite a wealth of descriptive data obtained from patient histories, imaging techniques, electroe...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章,评审

    doi:10.1016/j.crvi.2004.10.010

    authors: Sloviter RS

    更新日期:2005-02-01 00:00:00

  • Identification of new partners of the epithelial sodium channel alpha subunit.

    abstract::A fine regulation of the amiloride-sensitive Epithelial Sodium Channel (ENaC), made of alpha, beta and gamma subunits, is crucial for maintenance of Na+ balance and blood pressure. Both beta- and gamma-ENaC participate in negative regulation by interacting with Nedd4-2, an E3 ubiquitin-ligase. Disruption of this inter...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/s1631-0691(03)00154-9

    authors: Malbert-Colas L,Nicolas G,Galand C,Lecomte MC,Dhermy D

    更新日期:2003-07-01 00:00:00

  • Toxicity assessment of the puffer fish Lagocephalus lagocephalus from the Tunisian coast.

    abstract::This study was undertaken to assess the risk of poisoning due to consumption of the puffer fish Lagocephalus lagocephalus collected along the Tunisian coast. Wistar rats were daily intraperitoneally injected, for 10 days, with acidic extracts of liver or flesh (muscles + skin) of L. lagocephalus. Control rats received...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2008.05.005

    authors: Saoudi M,Abdelmouleh A,Kammoun W,Ellouze F,Jamoussi K,El Feki A

    更新日期:2008-08-01 00:00:00

  • [Is there any point to eradicate Phragmanthera capitata parasitizing African rubber trees?].

    abstract::The effect of Phragmanthera capitata (Sprengel) Balle, an epiphytic Loranthaceae, on latex production of three clones of rubber tree, Hevea brasiliensis (Müll. Arg.), was studied in the industrial plantation of Mitzic, in Gabon. The 22-year-old trees, presenting the largest trunk circumference, were the most parasitiz...

    journal_title:Comptes rendus biologies

    pub_type: 杂志文章

    doi:10.1016/j.crvi.2006.01.007

    authors: Engone Obiang NL,Sallé G

    更新日期:2006-03-01 00:00:00