Cold-adapted protease enables quantitation of surface proteins in the absence of membrane trafficking.

Abstract:

:We report here an improved method for analyzing protein surface expression utilizing a cold-adapted trypsin. Preservation of activity of the enzyme at 0-4°C permits modification of the protease method of surface analysis to temperatures at which trafficking of mammalian plasmalemmal proteins is blocked. This is an important advantage over established trypsin-cleavage protocols. Moreover, the method is less time-consuming than surface biotinylation.

journal_name

Biotechniques

journal_title

BioTechniques

authors

Ahmad F,Coleman SK,Kaila K,Blaesse P

doi

10.2144/000113651

subject

Has Abstract

pub_date

2011-04-01 00:00:00

pages

255-7

issue

4

eissn

0736-6205

issn

1940-9818

pii

000113651

journal_volume

50

pub_type

杂志文章
  • Measurement of prostaglandin G/H synthase and lipoxygenase activity in the stomach wall by HPLC.

    abstract::A method for the determination of prostaglandin G/H synthase and lipoxygenase activities in tissues was developed and employed with rat gastric mucosa samples. Tissues and microsomes were incubated in a buffer containing nonionic detergent and 1.32 mM arachidonic acid for 10 min. Following extraction with ethyl acetat...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Stein TA,Bailey B,Auguste LJ,Wise L

    更新日期:1991-02-01 00:00:00

  • Use of short-lived green fluorescent protein for the detection of proteasome inhibition.

    abstract::Human embryonic kidney (HEK293) cells were stably transduced with a retroviral vector containing an expression cassette for a short-lived green fluorescent protein (d2EGFP) and the neomycin resistance gene (Neor). When Neor HEK293 clones were treated with proteasome inhibitors, lactacystin or MG132, an increase in the...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/01303dd03

    authors: Andreatta C,Nahreini P,Hovland AR,Kumar B,Edwards-Prasad J,Prasad KN

    更新日期:2001-03-01 00:00:00

  • High-throughput RT-PCR analysis of multiple transcripts using a microplate RNA isolation procedure.

    abstract::We have developed a high-throughput, multiplex reverse transcription PCR (RTPCR) assay that is suitable for the analysis of medium-to low-copy cellular RNA transcripts from small numbers of cells (10(4)). High throughput was attained by utilizing microplate-based RNA extraction and RTPCR protocols, followed by PCR pro...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/97226st02

    authors: Su S,Vivier RG,Dickson MC,Thomas N,Kendrick MK,Williamson NM,Anson JG,Houston JG,Craig FF

    更新日期:1997-06-01 00:00:00

  • A simple method for genetic typing of transferrins in nonhuman primates.

    abstract::The serum protein transferrin (Tf) is a valuable marker for genetic studies of primates, because it is usually polymorphic, exhibiting as many as 13 allelic forms with high heterozygosity. The standard procedure to detect the different phenotypes requires vertical electrophoresis on polyacrylamide gels for 18 h at 4 d...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Manis GS,Samples NK,Stone WH

    更新日期:1993-11-01 00:00:00

  • Ribonuclease H renaturation gel assay using a fluorescent-labeled substrate.

    abstract::Ribonucleases H (RNases H) are enzymes that specifically degrade the RNA of RNA-DNA hybrids. These enzymes are involved in DNA replication, reverse transcription (RT) and antisense oligodeoxyribonucleotide-mediated arrest of translation. One of the most valuable tools for assaying RNase H activity is the renaturation ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/97235rr01

    authors: Han LY,Ma WP,Crouch RJ

    更新日期:1997-11-01 00:00:00

  • Fast separations of plasmid DNA using discontinuous gradients in the preparative ultracentrifuge.

    abstract::Plasmid DNA can be purified in 20 min using a three-step CsCl gradient in a vertical tube rotor. Ultracentrifugation with discontinuous gradients yields DNA with purity comparable to that obtained with longer isopycnic separations and with columns. ...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Dorin M,Bornecque CA

    更新日期:1995-01-01 00:00:00

  • Cloning and sequence analysis of homeobox transcription factor cDNAs with an inosine-containing probe.

    abstract::Much effort has been directed toward the isolation and characterization of homeobox cDNAs from numerous cell types because they encode transcription factors important to many cellular processes, including pattern formation in the embryo, cell growth and cell differentiation. Many novel homeobox cDNAs have been isolate...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Gorski DH,LePage DF,Walsh K

    更新日期:1994-05-01 00:00:00

  • Double staining to increase the sensitivity of protein detection in polyacrylamide gels.

    abstract::As more and more researchers are examining proteins that are available only in extremely limited quantities, i.e., cellular extracts or genetic engineering products, it is critical to utilize staining methods that maximize sensitivity. The protocol we describe here--double staining of polyacrylamide electrophoresis ge...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Ross M,Peters L

    更新日期:1990-11-01 00:00:00

  • siRNA cell arrays for high-content screening microscopy.

    abstract::RNA interference (RNAi) is a recent advance that provides the possibility to reduce the expression of specific target genes in cultured mammalian cells with potential applications on a genome-wide scale. However, to achieve this, robust methodologies that allow automated and efficient delivery of small interfering RNA...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/04373RT01

    authors: Erfle H,Simpson JC,Bastiaens PI,Pepperkok R

    更新日期:2004-09-01 00:00:00

  • Advantages of mRNA amplification for microarray analysis.

    abstract::Expanding applications of cDNA microarrays such as fine needle aspiration biopsy and laser capture microdissection necessitate the ability to perform arrays with minute starting amounts of RNA. While methods for amplifying RNA have been advocated, the fidelity of array results using amplified material has not been ful...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/02334mt04

    authors: Feldman AL,Costouros NG,Wang E,Qian M,Marincola FM,Alexander HR,Libutti SK

    更新日期:2002-10-01 00:00:00

  • Profile matching and profile subtraction: application of computer-based image analysis system for two-dimensional electrophoresis gels.

    abstract::The microcomputer-based image analysis system IB-1000 (developed by Indiana Biotech, Highland, IN) for two-dimensional electrophoresis gels has been described previously (9). It allows the user to compare protein spots between two profiles and identify those spots that are commonly shared in both profiles. This report...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Lee C,Sherwood ER,Sensibar JA,Berg LA,Chen YC,Tseng CC

    更新日期:1989-04-01 00:00:00

  • An assay for small scale screening of candidate β cell proliferative factors using intact islets.

    abstract::Current protocols for screening proliferative factors for β cells ex vivo are time-consuming, require cell lines or dissociated islets, and often entail expensive specialized screening equipment. Here we present an efficient and lower cost alternative that utilizes intact mouse islets for the initial screening of prol...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000114115

    authors: Mosser RE,Gannon M

    更新日期:2013-12-01 00:00:00

  • A microbiological assay for the quantitative determination of glutathione.

    abstract::Based on the requirement of a glutathione-deficient mutant strain of Saccharomyces cerevisiae to take up external glutathione for growth on synthetic media, a simple agar diffusion test for quantitative detection of total glutathione from various sources was established. Glutathione concentrations can be reliably dete...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/96215st07

    authors: Schmidt M,Grey M,Brendel M

    更新日期:1996-11-01 00:00:00

  • A novel yeast-based recombination method to clone and propagate diverse HIV-1 isolates.

    abstract::Replication studies on human immunodeficiency virus 1 (HIV-1) rely on a few laboratory strains that are divergent from dominant HIV-1 subtypes in the epidemic. Several phenotypic differences between diverse HIV-1 isolates and subtypes could affect vaccine development and treatment, but this research field lacks robust...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000113119

    authors: Dudley DM,Gao Y,Nelson KN,Henry KR,Nankya I,Gibson RM,Arts EJ

    更新日期:2009-05-01 00:00:00

  • New primer strategy improves precision of differential display.

    abstract::To increase the reproducibility and to reduce the false positives in the initial mRNA differential display, modified long composite primers were developed based on both mRNA differential display and RNA arbitrarily primed PCR fingerprinting methods. Ten-base nucleotides were added at the 5' ends of the primers used in...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Zhao S,Ooi SL,Pardee AB

    更新日期:1995-05-01 00:00:00

  • 14C-methylamine-glutaraldehyde conjugation as an alternative to iodination for protein labeling.

    abstract::Radiolabeling of native proteins conventionally has required iodination using 125Iodine (125I). Although radioiodination can result in high specific activity, there are several drawbacks in the use of 125I (e.g., radiological hazards and short half-life). 14C-Methylamine-glutaraldehyde conjugation to proteins offers a...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/03352pt02

    authors: Moore PL,Damelin LH,Harrison TJ

    更新日期:2003-08-01 00:00:00

  • Two large insert vectors, lambda PS and lambda KO, facilitate rapid mapping and targeted disruption of mammalian genes.

    abstract::The construction and the testing of two lambda phage vectors are described that greatly simplify the tasks of mapping genomic DNA and making replacement-type gene-targeting vectors for mammalian cells from a library of isogenic genomic DNA. The first vector, lambda PS, accommodates up to 20 kb and allows inserts to be...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Nehls M,Messerle M,Sirulnik A,Smith AJ,Boehm T

    更新日期:1994-10-01 00:00:00

  • Application of 5-bromo-2'deoxyuridine as a label for in situ hybridization in chromosome microdissection and painting, and 3' OH DNA end labeling for apoptosis.

    abstract::We have utilized 5-bromo-2'deoxyuridine (BrdU) substituted DNA as a probe for a number of applications including, principally, for chromosome painting by fluorescence in situ hybridization (FISH) but also for DNA end-labeling to detect apoptotic cell death and for filter hybridization. Br-dUTP was used as a substitute...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Mühlmann-Díaz MC,Dullea RG,Bedford JS

    更新日期:1996-07-01 00:00:00

  • BUILDING THE FUTURE FROM 3D BLUEPRINTS.

    abstract::3D printed biomaterials are increasingly used in cell cultures and drug screens. Given the ease of creating artificial tissues, will this technique revolutionize biomedicine and organ implants in the future? ...

    journal_title:BioTechniques

    pub_type: 新闻

    doi:10.2144/btn-2017-0113

    authors: Prabhune M

    更新日期:2018-03-01 00:00:00

  • Magnetic bead purification of labeled DNA fragments for high-throughput capillary electrophoresis sequencing.

    abstract::We have developed an automated purification method for dye-terminator-based DNA sequencing products using a magnetic bead approach. This 384-well protocol generates sequence fragments that are essentially free of template DNA, salt, and excess dye-terminator products. In comparison with traditional ethanol precipitati...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/02326st05

    authors: Elkin C,Kapur H,Smith T,Humphries D,Pollard M,Hammon N,Hawkins T

    更新日期:2002-06-01 00:00:00

  • Improved extraction of PCR-quality community DNA from digesta and fecal samples.

    abstract::Several DNA extraction methods have been reported for use with digesta or fecal samples, but problems are often encountered in terms of relatively low DNA yields and/or recovering DNA free of inhibitory substances. Here we report a modified method to extract PCR-quality microbial community DNA from these types of samp...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/04365ST04

    authors: Yu Z,Morrison M

    更新日期:2004-05-01 00:00:00

  • Optimization of western blotting for the detection of proteins of different molecular weight.

    abstract::Protein samples electroblotted onto nitrocellulose membranes and quenched with a mixture of blocking agents produced a strong signal for cystic fibrosis transmembrane-conductance regulator (CFTR), a high-molecular-weight protein, in western blotting. Optimized conditions for CFTR were then extended to medium- and low-...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2019-0124

    authors: Heda GD,Shrestha L,Thapa S,Ghimire S,Raut D

    更新日期:2020-06-01 00:00:00

  • Development and application of a nonradioactive phosphorescent autoradiograph marker.

    abstract::A simple and rapid method for permanently marking autoradiographs is described. This procedure is based on the phosphorescence of light-activated zinc sulfide and the subsequent exposure of x-ray films by this light emission. A lacquer-based carrier allows the zinc sulfide to remain in suspension and permits permanent...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Seto D,Rohrabacher C

    更新日期:1991-05-01 00:00:00

  • Limitations for purification of murine interleukin-18 when expressed as a fusion protein containing the FLAG peptide.

    abstract::As a strategy to purify recombinant murine Interleukin (IL)-18, we cloned the mature coding region of this protein into the pFLAG-1 expression system. The intent was to use the FLAG peptide "tag" as an amino terminal addition to IL-18 so that purification of this fusion protein (FLAG-IL-18) on anti-FLAG antibody affin...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Elhofy A,Bost KL

    更新日期:1998-09-01 00:00:00

  • Enhanced assessment of contractile dynamics in Drosophila hearts.

    abstract::The Drosophila heart has gained considerable traction as a model of cardiac development and physiology. Previously we described a semiautomatic optical heartbeat analysis (SOHA) method for quantifying functional parameters from the fly heart that facilitated its use as an organ system and disease model. Here we presen...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000114255

    authors: Cammarato A,Ocorr S,Ocorr K

    更新日期:2015-02-01 00:00:00

  • Genotyping of human apolipoprotein E alleles by the new qualitative, microplate-based CASSI-detection assay.

    abstract::A new qualitative PCR product detection assay called competitive amplified single mutation detection by selective probe hybridization immunoassay (CASSI) was developed for genotyping the most common apolipoprotein E (apoE) polymorphisms. Single target DNA strands immobilized using biotin on streptavidin-coated micropl...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/98251st03

    authors: Köhler T,Rost AK,Purschwitz K,Vondran S,Remke H,Wagner O,Richter V

    更新日期:1998-07-01 00:00:00

  • A concise guide to cDNA microarray analysis.

    abstract::Microarray expression analysis has become one of the most widely used functional genomics tools. Efficient application of this technique requires the development of robust and reproducible protocols. We have optimized all aspects of the process, including PCR amplification of target cDNA clones, microarray printing, p...

    journal_title:BioTechniques

    pub_type: 杂志文章,评审

    doi:10.2144/00293bi01

    authors: Hegde P,Qi R,Abernathy K,Gay C,Dharap S,Gaspard R,Hughes JE,Snesrud E,Lee N,Quackenbush J

    更新日期:2000-09-01 00:00:00

  • Multiwell 14CO2-capture assay for evaluation of substrate oxidation rates of cells in culture.

    abstract::14CO2 capture is commonly used to evaluate the cellular oxidation rate of respiratory substrates. A modification of the established 14CO2-capture method was developed that enables the use of cells in adherent culture and easy analysis of multiple samples under different culture conditions. The use of commercially avai...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/98245st04

    authors: Collins CL,Bode BP,Souba WW,Abcouwer SF

    更新日期:1998-05-01 00:00:00

  • Polymerase chain displacement reaction.

    abstract::Quantitative PCR assays are now the standard method for viral diagnostics. These assays must be specific, as well as sensitive, to detect the potentially low starting copy number of viral genomic material. We describe a new technique, polymerase chain displacement reaction (PCDR), which uses multiple nested primers in...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000113951

    authors: Harris CL,Sanchez-Vargas IJ,Olson KE,Alphey L,Fu G

    更新日期:2013-02-01 00:00:00

  • Samasy: an automated system for sample selection and robotic transfer.

    abstract::Sample automation and management is increasingly important as the number and size of population-scale and high-throughput projects grow. This is particularly the case in large-scale population studies where sample size is far outpacing the commonly used 96-well plate format. To facilitate management and transfer of sa...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2018-0090

    authors: Cario CL,Witte JS

    更新日期:2018-12-01 00:00:00