A replication study of genome-wide CNV association for hepatic biomarkers identifies nine genes associated with liver function.

Abstract:

:Aspartate aminotransferase (AST) and alanine aminotransferase (ALT) are biochemical markers used to test for liver diseases. Copy number variation (CNV) plays an important role in determining complex traits and is an emerging area in the study various diseases. We performed a genome-wide association study with liver function biomarkers AST and ALT in 407 unrelated Koreans. We assayed the genome-wide variations on an Affymetrix Genome-Wide 6.0 array, and CNVs were analyzed using HelixTree. Using single linear regression, 32 and 42 CNVs showed significance for AST and ALT, respectively (P value < 0.05). We compared CNV-based genes between the current study (KARE2; AST-140, ALT-172) and KARE1 (AST-1885, ALT-773) using NetBox. Results showed 9 genes (CIDEB, DFFA, PSMA3, PSMC5, PSMC6, PSMD12, PSMF1, SDC4, and SIAH1) were overlapped for AST, but no overlapped genes were found for ALT. Functional gene annotation analysis shown the proteasome pathway, Wnt signaling pathway, programmed cell death, and protein binding.

journal_name

BMB Rep

journal_title

BMB reports

authors

Kim HY,Byun MJ,Kim H

doi

10.5483/bmbrep.2011.44.9.578

subject

Has Abstract

pub_date

2011-09-01 00:00:00

pages

578-83

issue

9

eissn

1976-6696

issn

1976-670X

journal_volume

44

pub_type

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