Mechanism of inactivation of human leukocyte elastase by a chloromethyl ketone: kinetic and solvent isotope effect studies.

Abstract:

:The mechanism of inactivation of human leukocyte elastase (HLE) by the chloromethyl ketone MeOSuc-Ala-Ala-Pro-Val-CH2Cl was investigated. The dependence of the first-order rate constant for inactivation on concentration of chloromethyl ketone is hyperbolic and suggests formation of a reversible "Michaelis complex" prior to covalent interaction between the enzyme and inhibitor. However, the observed Ki value is 10 microM, at least 10-fold lower than dissociation constants for complexes formed from interaction of HLE with structurally related substrates or reversible inhibitors, and suggests that Ki is a complex kinetic constant, reflecting the formation and accumulation of both the Michaelis complex and a second complex. It is proposed that this second complex is a hemiketal formed from attack of the active site serine on the carbonyl carbon of the inhibitor. The accumulation of this intermediate may be a general feature of reactions of serine proteases and chloromethyl ketones derived from specific peptides and accounts for the very low Ki values observed for these reactions. The solvent deuterium isotope effect (SIE) on the inactivation step (ki) is 1.58 +/- 0.07 and is consistent with rate-limiting, general-catalyzed attack of the active site His on the methylene carbon of the inhibitor with displacement of chloride anion. The general catalyst is thought to be the active site Asp. In contrast, the SIE on the second-order rate constant for HLE inactivation, ki/Ki, is inverse and equals 0.64 +/- 0.05.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Stein RL,Trainor DA

doi

10.1021/bi00367a011

subject

Has Abstract

pub_date

1986-09-23 00:00:00

pages

5414-9

issue

19

eissn

0006-2960

issn

1520-4995

journal_volume

25

pub_type

杂志文章
  • Preparation and X-ray structures of metal-free, dicobalt and dimanganese forms of soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath).

    abstract::A three-component soluble methane monooxygenase (sMMO) enzyme system catalyzes the hydroxylation of methane to methanol at a carboxylate-bridged diiron center housed in the alpha-subunit of the hydroxylase (MMOH). Catalysis is facilitated by the presence of a regulatory protein (MMOB) and inhibited by MMOD, a protein ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048140z

    authors: Sazinsky MH,Merkx M,Cadieux E,Tang S,Lippard SJ

    更新日期:2004-12-28 00:00:00

  • Mutagenic and genotoxic effects of three vinyl chloride-induced DNA lesions: 1,N6-ethenoadenine, 3,N4-ethenocytosine, and 4-amino-5-(imidazol-2-yl)imidazole.

    abstract::The mutagenic and genotoxic properties of 1,N6-ethenoadenine (epsilon Ade), 3,N4-ethenocytosine (epsilon Cyt), and 4-amino-5-(imidazol-2-yl)imidazole (beta) were investigated in vivo. The former two modified bases are known DNA adducts formed by the human carcinogen vinyl chloride; beta is formed by pyrimidine ring-op...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00210a031

    authors: Basu AK,Wood ML,Niedernhofer LJ,Ramos LA,Essigmann JM

    更新日期:1993-11-30 00:00:00

  • Insight into the mechanism of phosphoenolpyruvate mutase catalysis derived from site-directed mutagenesis studies of active site residues.

    abstract::PEP mutase catalyzes the conversion of phosphoenolpyruvate (PEP) to phosphonopyruvate in biosynthetic pathways leading to phosphonate secondary metabolites. A recent X-ray structure [Huang, K., Li, Z., Jia, Y., Dunaway-Mariano, D., and Herzberg, O. (1999) Structure (in press)] of the Mytilus edulis enzyme complexed wi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990771j

    authors: Jia Y,Lu Z,Huang K,Herzberg O,Dunaway-Mariano D

    更新日期:1999-10-26 00:00:00

  • Isoforms of the EP3 subtype of human prostaglandin E2 receptor transduce both intracellular calcium and cAMP signals.

    abstract::The EP3 subtype of prostaglandin E2 receptor transduces diverse physiological responses in mammalian tissues through signaling pathways coupled to heterotrimeric G proteins. Distinct cDNA clones encoding five isoforms of the EP3 receptor were isolated from a human uterus cDNA library. The human EP3 receptor isoforms d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00252a016

    authors: An S,Yang J,So SW,Zeng L,Goetzl EJ

    更新日期:1994-12-06 00:00:00

  • Structure of pseudobactin A214, a siderophore from a bean-deleterious Pseudomonas.

    abstract::Bean-deleterious Pseudomonas A214 produced the extracellular yellow-green, fluorescent siderophore [microbial iron(III) transport agent] pseudobactin A214 under iron-limiting conditions. Pseudobactin A214 has a molecular formula of C46H64N13O22 and a molecular mass of 1151 g/mol. Pseudobactin A214 contained an N-block...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00367a022

    authors: Buyer JS,Wright JM,Leong J

    更新日期:1986-09-23 00:00:00

  • Hydrolysis of phosphatidylcholine by hepatic lipase in discoidal and spheroidal recombinant high-density lipoprotein.

    abstract::Hepatic lipase (HL) hydrolysis of phosphatidylcholine (PC) was studied in recombinant high-density lipoprotein particles (r-HDL). r-HDL were made from cholate mixed micelles that contained PC, apo AI, and, in some cases, unesterified cholesterol. r-HDL were characterized using chemical composition, nondenaturing gradi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970356w

    authors: Tansey JT,Thuren TY,Jerome WG,Hantgan RR,Grant K,Waite M

    更新日期:1997-10-07 00:00:00

  • Site-directed mutagenesis of kappa-bungarotoxin: implications for neuronal receptor specificity.

    abstract::Postsynaptic polypeptide neurotoxins isolated from the venoms of elapid and hydrophid snakes exhibit the ability to bind selectively to and inhibit different types of receptors that function in nerve signal transmission. On the basis of their amino acid sequences and three-dimensional structures, these neurotoxins are...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00179a011

    authors: Fiordalisi JJ,al-Rabiee R,Chiappinelli VA,Grant GA

    更新日期:1994-04-05 00:00:00

  • Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction.

    abstract::We have investigated the effects of mixed Na+: Mg2+ ionic solutions on the stability of the nonspecific lac repressor-DNA complex. The effects of Mg2+ are simply interpreted in terms of its role as a competitor (with repressor) for DNA sites. From these studies, the binding constant of the Mg-DNA complex can be determ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00641a005

    authors: Record MT Jr,deHaseth PL,Lohman TM

    更新日期:1977-11-01 00:00:00

  • Binding of copper and silver to single-site variants of peptidylglycine monooxygenase reveals the structure and chemistry of the individual metal centers.

    abstract::Peptidylglycine monooxygenase (PHM) catalyzes the final step in the biosynthesis of amidated peptides that serve as important signaling molecules in numerous endocrine pathways. The catalytic mechanism has attracted much attention because of a number of unique attributes, including the presence of a pair of uncoupled ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi4015264

    authors: Chauhan S,Kline CD,Mayfield M,Blackburn NJ

    更新日期:2014-02-18 00:00:00

  • Inhibition of protein phosphatase 2A activity by selective electrophile alkylation damage.

    abstract::Protein serine/threonine phosphatase 2A (PP2A) is a critical regulator of numerous cellular signaling processes and a potential target for reactive electrophiles that dysregulate phosphorylation-dependent signal transduction cascades. The predominant cellular form of PP2A is a heterotrimeric holoenzyme consisting of a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060551n

    authors: Codreanu SG,Adams DG,Dawson ES,Wadzinski BE,Liebler DC

    更新日期:2006-08-22 00:00:00

  • Membrane-associated c-type cytochromes from the green sulfur bacterium Chlorobium limicola forma thiosulfatophilum: purification and characterization of cytochrome c553.

    abstract::Tetraheme cytochromes involved in photosynthetic electron transport have previously been described associated with the reaction centers of purple photosynthetic bacteria; however, similar heme proteins have not until now been characterized in the phylogenetically distinct green sulfur bacteria. In this paper we descri...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962624g

    authors: Albouy D,Sturgis JN,Feiler U,Nitschke W,Robert B

    更新日期:1997-02-18 00:00:00

  • In vitro phosphinate methylation by PhpK from Kitasatospora phosalacinea.

    abstract::Radical S-adenosyl-L-methionine, cobalamin-dependent methyltransferases have been proposed to catalyze the methylations of unreactive carbon or phosphorus atoms in antibiotic biosynthetic pathways. To date, none of these enzymes has been purified or shown to be active in vitro. Here we demonstrate the activity of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201220r

    authors: Werner WJ,Allen KD,Hu K,Helms GL,Chen BS,Wang SC

    更新日期:2011-10-25 00:00:00

  • Evolutionarily distinct versions of the multidomain enzyme α-isopropylmalate synthase share discrete mechanisms of V-type allosteric regulation.

    abstract::Understanding the evolution of allostery in multidomain enzymes remains an important step in improving our ability to identify and exploit structure-function relationships in allosteric mechanisms. A recent protein similarity network for the DRE-TIM metallolyase superfamily indicated there are two evolutionarily disti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500702u

    authors: Kumar G,Frantom PA

    更新日期:2014-07-29 00:00:00

  • C5 cytosine methylation at CpG sites enhances sequence selectivity of mitomycin C-DNA bonding.

    abstract::We have established that UvrABC nuclease is equally efficient in cutting mitomycin C (MC)-DNA monoadducts formed at different sequences and that the degree of UvrABC cutting represents the extent of drug-DNA bonding. Using this method we determined the effect of C5 cytosine methylation on the DNA monoalkylation by MC ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991307h

    authors: Li VS,Reed M,Zheng Y,Kohn H,Tang M

    更新日期:2000-03-14 00:00:00

  • Roles of cysteines in human lecithin:cholesterol acyltransferase.

    abstract::Human lecithin:cholesterol acyltransferase (LCAT, E.C.2.3.1.43) is a serine-type esterase that contains six cysteines, two of which, Cys31 and Cys184, are free. The remaining cysteines form disulfide links. One of these is between Cys50 and Cys74 and the other is between Cys313 and Cys356. The cDNA of LCAT and mutants...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00063a021

    authors: Qu SJ,Fan HZ,Blanco-Vaca F,Pownall HJ

    更新日期:1993-03-30 00:00:00

  • Magnesium fluoride-dependent binding of small G proteins to their GTPase-activating proteins.

    abstract::GTPase-activating proteins (GAPs) enhance the intrinsic GTPase activity of small G proteins, such as Ras and Rho, by contributing a catalytic arginine to the active site. An intramolecular arginine plays a similar role in heterotrimeric G proteins. Aluminum fluoride activates the GDP form of heterotrimeric G proteins,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991358e

    authors: Graham DL,Eccleston JF,Chung CW,Lowe PN

    更新日期:1999-11-09 00:00:00

  • A kinetic study of interactions of (Rp)- and (Sp)-adenosine cyclic 3',5'-phosphorothioates with type II bovine cardiac muscle adenosine cyclic 3',5'-phosphate dependent protein kinase.

    abstract::The stereoselectivity of the adenosine cyclic 3',5'-phosphate (cAMP) binding sites on the regulatory subunit of the type II bovine cardiac muscle cAMP-dependent protein kinase was investigated by examining the interactions of (Rp)- and (Sp)-adenosine cyclic 3',5'-phosphorothioates (cAMPS) with these sites. While activ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00261a028

    authors: O'Brian CA,Roczniak SO,Bramson HN,Baraniak J,Stec WJ,Kaiser ET

    更新日期:1982-08-31 00:00:00

  • Identification of two serine residues essential for agonist-induced 5-HT2A receptor desensitization.

    abstract::5-HT(2A) serotonin receptors represent the principal molecular targets for LSD-like hallucinogens and atypical antipsychotic drugs. It has been proposed that a dysregulation of 5-HT(2A) receptor-mediated signaling may contribute to the pathogenesis of schizophrenia and related diseases. A major mechanism for the atten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035061z

    authors: Gray JA,Compton-Toth BA,Roth BL

    更新日期:2003-09-16 00:00:00

  • Mode of interaction of aminooxy compounds with sheep liver serine hydroxymethyltransferase.

    abstract::The interaction of aminooxy compounds such as aminooxyacetate (AAA), L-canaline, and hydroxylamine with sheep liver serine hydroxymethyltransferase (EC 2.1.2.1) was studied by absorption spectra and stopped-flow spectrophotometry and compared with the unique feature of interaction of O-amino-D-serine (OADS) with the e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00451a010

    authors: Baskaran N,Prakash V,Savithri HS,Radhakrishnan AN,Appaji Rao N

    更新日期:1989-12-12 00:00:00

  • Reduction kinetics of a flavin oxidoreductase LuxG from Photobacterium leiognathi (TH1): half-sites reactivity.

    abstract::Bacterial bioluminescence is a phenomenon resulting from the reaction of a two-component FMN-dependent aldehyde monooxygenase system, which comprises a bacterial luciferase and a flavin reductase. Bacterial luciferase (LuxAB) is one of the most extensively investigated two-component monooxygenases, while its reductase...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1009985

    authors: Nijvipakul S,Ballou DP,Chaiyen P

    更新日期:2010-11-02 00:00:00

  • Effects of paramagnetic shift reagents on the 13C nuclear magnetic resonance spectra of egg phosphatidylcholine enriched with 13C in the N-methyl carbons.

    abstract::Effects of paramagnetic shift reagents on the 13C NMR spectra obtained from single-walled vesicle dispersions of egg phosphatidylcholine enriched with 13C in the N-methyl carbons are investigated. Spectra obtained at 25.1 MHz show that, at Yb3+ to phospholipid molar ratios as low as 0.06, complete resolution of the N-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00653a007

    authors: Sears B,Hutton WC,Thompson TE

    更新日期:1976-04-20 00:00:00

  • Cooperativity and oligomeric status of cardiac muscarinic cholinergic receptors.

    abstract::Muscarinic cholinergic receptors can appear to be more numerous when labeled by [(3)H]quinuclidinylbenzilate (QNB) than by N-[(3)H]methylscopolamine (NMS). The nature of the implied heterogeneity has been studied with M(2) receptors in detergent-solubilized extracts of porcine atria. The relative capacity for [(3)H]NM...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011746s

    authors: Park PS,Sum CS,Pawagi AB,Wells JW

    更新日期:2002-04-30 00:00:00

  • Acoustically mounted microcrystals yield high-resolution X-ray structures.

    abstract::We demonstrate a general strategy for determining structures from showers of microcrystals. It uses acoustic droplet ejection to transfer 2.5 nL droplets from the surface of microcrystal slurries, through the air, onto mounting micromesh pins. Individual microcrystals are located by raster-scanning a several-micromete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200549x

    authors: Soares AS,Engel MA,Stearns R,Datwani S,Olechno J,Ellson R,Skinner JM,Allaire M,Orville AM

    更新日期:2011-05-31 00:00:00

  • Scaffolding functions of arrestin-2 revealed by crystal structure and mutagenesis.

    abstract::Arrestin binding to activated, phosphorylated G protein-coupled receptors (GPCRs) represents a critical step in regulation of light- and hormone-dependent signaling. Nonvisual arrestins, such as arrestin-2, interact with multiple proteins for the purpose of propagating and terminating signaling events. Using a combina...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015905j

    authors: Milano SK,Pace HC,Kim YM,Brenner C,Benovic JL

    更新日期:2002-03-12 00:00:00

  • Human secreted carbonic anhydrase: cDNA cloning, nucleotide sequence, and hybridization histochemistry.

    abstract::Complementary DNA clones coding for the human secreted carbonic anhydrase isozyme (CA VI) have been isolated and their nucleotide sequences determined. These clones identify a 1.45-kb mRNA that is present in high levels in parotid submandibular salivary glands but absent in other tissues such as the sublingual gland, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00216a035

    authors: Aldred P,Fu P,Barrett G,Penschow JD,Wright RD,Coghlan JP,Fernley RT

    更新日期:1991-01-15 00:00:00

  • Orientation of Human Microprocessor on Primary MicroRNAs.

    abstract::Single-stranded microRNAs (miRNAs) regulate gene expression by triggering mRNA degradation and/or inhibiting mRNA translation. miRNAs play important roles in various critical cellular processes and are associated with numerous human diseases, including cancer and neurodegenerative diseases. miRNA sequences are embedde...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.8b00944

    authors: Nguyen HM,Nguyen TD,Nguyen TL,Nguyen TA

    更新日期:2019-01-29 00:00:00

  • Translin binding to DNA: recruitment through DNA ends and consequent conformational transitions.

    abstract::The human translin protein binds a variety of sequences (chromosomal breakpoint consensus sequences, their sequence variants, as well as nonbreakpoint sequences such as simple AT and GC repeats) at nanomolar protein concentration when short single strands ( approximately 20-30mers) are used as DNA targets. The protein...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026378m

    authors: Sengupta K,Rao BJ

    更新日期:2002-12-24 00:00:00

  • Anisotropic dynamics of the JE-2147-HIV protease complex: drug resistance and thermodynamic binding mode examined in a 1.09 A structure.

    abstract::The structure of HIV protease (HIV Pr) bound to JE-2147 (also named AG1776 or KNI-764) is determined here to 1.09 A resolution. This highest-resolution structure for HIV Pr allows refinement of anisotropic displacement parameters (ADPs) for all atoms. Clustering based on the directional information in ADPs defines two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011781z

    authors: Reiling KK,Endres NF,Dauber DS,Craik CS,Stroud RM

    更新日期:2002-04-09 00:00:00

  • Genetic polymorphism of human cytochrome P-450 (S)-mephenytoin 4-hydroxylase. Studies with human autoantibodies suggest a functionally altered cytochrome P-450 isozyme as cause of the genetic deficiency.

    abstract::The metabolism of the anticonvulsant mephenytoin is subject to a genetic polymorphism. In 2-5% of Caucasians and 18-23% of Japanese subjects a specific cytochrome P-450 isozyme, P-450 meph, is functionally deficient or missing. We have accumulated evidence that autoimmune antibodies observed in sera of patients with t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00399a065

    authors: Meier UT,Meyer UA

    更新日期:1987-12-15 00:00:00

  • Comparison of two metal-dependent pyruvate aldolases related by convergent evolution: substrate specificity, kinetic mechanism, and substrate channeling.

    abstract::HpaI and BphI are two pyruvate class II aldolases found in aromatic meta-cleavage degradation pathways that catalyze similar reactions but are not related in sequence. Steady-state kinetic analysis of the aldol addition reactions and product inhibition assays showed that HpaI exhibits a rapid equilibrium random order ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100251u

    authors: Wang W,Baker P,Seah SY

    更新日期:2010-05-04 00:00:00