Machine learning: novel bioinformatics approaches for combating antimicrobial resistance.

Abstract:

PURPOSE OF REVIEW:Antimicrobial resistance (AMR) is a threat to global health and new approaches to combating AMR are needed. Use of machine learning in addressing AMR is in its infancy but has made promising steps. We reviewed the current literature on the use of machine learning for studying bacterial AMR. RECENT FINDINGS:The advent of large-scale data sets provided by next-generation sequencing and electronic health records make applying machine learning to the study and treatment of AMR possible. To date, it has been used for antimicrobial susceptibility genotype/phenotype prediction, development of AMR clinical decision rules, novel antimicrobial agent discovery and antimicrobial therapy optimization. SUMMARY:Application of machine learning to studying AMR is feasible but remains limited. Implementation of machine learning in clinical settings faces barriers to uptake with concerns regarding model interpretability and data quality.Future applications of machine learning to AMR are likely to be laboratory-based, such as antimicrobial susceptibility phenotype prediction.

journal_name

Curr Opin Infect Dis

authors

Macesic N,Polubriaginof F,Tatonetti NP

doi

10.1097/QCO.0000000000000406

subject

Has Abstract

pub_date

2017-12-01 00:00:00

pages

511-517

issue

6

eissn

0951-7375

issn

1473-6527

journal_volume

30

pub_type

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