A Multiplatform Approach for the Discovery of Novel Drug-Induced Kidney Injury Biomarkers.

Abstract:

:Drug-induced kidney injury (DIKI) is a common toxicity observed in pharmaceutical development. We demonstrated the use of label-free liquid chromatography-mass spectrometry (LC-MS) and multiplex liquid chromatography-single reaction monitoring (LC-SRM) as practical extensions of standard immunoassay based safety biomarker assessments for identification of new toxicity marker candidates and for improved mechanistic understanding. Two different anticancer drugs, doxorubicin (DOX) and cisplatin (cis-diamminedichloridoplatinum, CDDP), were chosen as the toxicants due to their different modes of nephrotoxicity. Analyses of urine samples from toxicant treated and untreated rats were compared to identify biochemical analytes that changed in response to toxicant exposure. A discovery (label-free LC-MS) and targeted proteomics (multiplex LC-SRM) approach was used in combination with well established immunoassay experiments for the identification of a panel of urinary protein markers related to drug induced nephrotoxicity in rats. The initial generation of an expanded set of markers was accomplished using the label-free LC-MS discovery screen and ELISA based analysis of six nephrotoxicity biomarker proteins. Diagnostic performance of the expanded analyte set was statistically compared to conventional nephrotoxicity biomarkers. False discovery rate (FDR) analysis revealed 18 and 28 proteins from the CDDP and DOX groups, respectively, exhibiting significant differences between the vehicle and treated groups. Multiplex SRM assays were constructed to more precisely quantify candidate markers selected from the discovery screen and immunoassay experiments. To evaluate the sensitivity and specificity for each of the candidate biomarkers, histopathology severity scores were used as a benchmark for renal injury followed by receiver-operating characteristic (ROC) curve analysis on selected biomarkers. Further examination of the best performing analytes revealed relevant biological significance after consideration of anatomical localization and functional roles. In summary, the inclusion of mass spectrometry together with conventional ELISA based assays resulted in the identification of an expanded set of biomarkers with a realistic potential for providing additional beneficial information in mechanistic investigations of drug induced kidney injury and with similar responsiveness to conventionally applied indicators of renal injury.

journal_name

Chem Res Toxicol

authors

Chen L,Smith J,Mikl J,Fryer R,Pack F,Williams BJ,Phillips JA,Papov VV Jr

doi

10.1021/acs.chemrestox.7b00159

subject

Has Abstract

pub_date

2017-10-16 00:00:00

pages

1823-1834

issue

10

eissn

0893-228X

issn

1520-5010

journal_volume

30

pub_type

杂志文章
  • Caffeine-derived N-nitroso compounds. II. Synthesis and characterization of nitrosation products from caffeidine and caffeidine acid.

    abstract::Caffeine on alkaline hydrolysis produces caffeidine [1-methyl-4-(methylamino)-5-(N-methylcarbamoyl)imidazole] and caffeidine acid [N-[4-(5-carboxy-1-methylimidazolyl)]-N,N'-dimethylurea]. We now report the synthesis and chemical characterization of mononitrosocaffeidine [1-methyl-4-(N-methyl-N-nitrosoamino)-5-(N-methy...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00031a008

    authors: Kumar R,Wacker CD,Mende P,Spiegelhalder B,Preussmann R,Siddiqi M

    更新日期:1993-01-01 00:00:00

  • Patterns of resistance to exonuclease digestion of oligonucleotides containing polycyclic aromatic hydrocarbon diol epoxide adducts at N6 of deoxyadenosine.

    abstract::The effect of adduct stereochemistry on the susceptibility to hydrolysis by snake venom (VPD) and bovine spleen (SPD) phosphodiesterases was investigated with short deoxyoligonucleotides containing defined adducts derived from alkylation of the exocyclic 6-amino group of dA by polycyclic aromatic hydrocarbon diol epox...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx010092l

    authors: Ilankumaran P,Pannell LK,Gebreselassie P,Pilcher AS,Yagi H,Sayer JM,Jerina DM

    更新日期:2001-09-01 00:00:00

  • Effects of intracerebroventricular administration of 5-(glutathion-S-yl)-alpha-methyldopamine on brain dopamine, serotonin, and norepinephrine concentrations in male Sprague-Dawley rats.

    abstract::alpha-Methyldopamine (alpha-MeDA) is a metabolite of the serotonergic neurotoxicants 3,4-(+/-)-(methylenedioxy)amphetamine (MDA) and 3,4-(+/-)-(methylenedioxy)methamphetamine (MDMA). alpha-MeDA readily oxidizes, and in the presence of glutathione (GSH) it forms 5-(glutathion-S-yl)-alpha-methyldopamine [5-(glutathion-S...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx9501546

    authors: Miller RT,Lau SS,Monks TJ

    更新日期:1996-03-01 00:00:00

  • Reaction of chromium (VI) with hydrogen peroxide in the presence of glutathione: reactive intermediates and resulting DNA damage.

    abstract::The reaction of chromium(VI) with hydrogen peroxide was studied in the presence of glutathione. In vitro, reaction of chromium(VI) with hydrogen peroxide alone led to production of hydroxyl radical as the significant reactive intermediate, while reaction of chromium(VI) with glutathione led to formation of two chromiu...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00018a016

    authors: Aiyar J,Berkovits HJ,Floyd RA,Wetterhahn KE

    更新日期:1990-11-01 00:00:00

  • Thickness of multiwalled carbon nanotubes affects their lung toxicity.

    abstract::Two samples of highly pure multiwalled carbon nanotubes (MWCNTs) similar in hydrophobicity and surface reactivity were prepared with similar length, <5 μm, but markedly different diameter (9.4 vs 70 nm). The samples were compared for their cytotoxic activity, uptake, and ability to induce oxidative stress (ROS product...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx200255h

    authors: Fenoglio I,Aldieri E,Gazzano E,Cesano F,Colonna M,Scarano D,Mazzucco G,Attanasio A,Yakoub Y,Lison D,Fubini B

    更新日期:2012-01-13 00:00:00

  • Alkylation of DNA by 1,3-dialkyl-3-acyltriazenes: correlation of biological activity with chemical behavior.

    abstract::The reactions of calf thymus DNA with four 1,3-dialkyl-3-acyltriazenes were studied alone or in the presence of pig liver esterase in pH 7.4 phosphate buffer for varying lengths of time. The best alkylating agent in the absence of esterase was determined to be 1,3-dimethyl-3-carbethoxytriazene (DMC), followed in order...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00028a013

    authors: Kroeger-Koepke MB,Michejda CJ,Smith RH Jr

    更新日期:1992-07-01 00:00:00

  • Formation and structure of cross-linking and monomeric pyrrole autoxidation products in 2,5-hexanedione-treated amino acids, peptides, and protein.

    abstract::2,5-Hexanedione (2,5-HD) is the neurotoxic gamma-diketone metabolite of the industrial solvent n-hexane. Substantial evidence indicates that 2,5-HD reacts with neurofilament protein lysine epsilon-amines to yield 2,5-dimethylpyrrole adducts and that this reaction is critical to the mechanism of toxicity. Alkylpyrroles...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00040a011

    authors: Zhu M,Spink DC,Yan B,Bank S,DeCaprio AP

    更新日期:1994-07-01 00:00:00

  • Intracellular activation of cytotoxic agents: kinetic models for methylnitrosoureas and N-methyl-N'-nitro-N-nitrosoguanidine in cell culture.

    abstract::The cytotoxic activity of N-methyl-N-nitrosourea (MNU), streptozotocin, and N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) was determined in cell culture by using a P388 cell growth rate inhibition assay. These agents appear to have very different activities when inhibition is related to the agent concentration in the cu...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00009a006

    authors: Weinkam RJ,Dolan ME

    更新日期:1989-05-01 00:00:00

  • Catalytic activities of human alpha class glutathione transferases toward carcinogenic dibenzo[a,l]pyrene diol epoxides.

    abstract::In this study, human glutathione transferases (GSTs) of alpha class have been assayed with the ultimate carcinogenic (-)-anti- and (+)-syn-diol epoxides (DEs) derived from the nonplanar dibenzo[a,l]pyrene (DBPDE) and the (+)-anti-diol epoxide of the planar benzo[a]pyrene [(+)-anti-BPDE] in the presence of glutathione ...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx025519i

    authors: Dreij K,Sundberg K,Johansson AS,Nordling E,Seidel A,Persson B,Mannervik B,Jernström B

    更新日期:2002-06-01 00:00:00

  • Identification and characterization of a reaction product of 2'-deoxyoxanosine with glycine.

    abstract::2'-Deoxyoxanosine (dOxo) is a novel DNA lesion produced from dGuo by reaction with nitrous acid or nitric oxide [Suzuki, T., Yamaoka, R., Nishi, M., Ide, H., and Makino, K. (1996) J. Am. Chem. Soc. 118, 2515-2516]. We investigated the reaction of dOxo with glycine (Gly) under physiological conditions. When 5 mM dOxo w...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx990164x

    authors: Suzuki T,Yamada M,Ide H,Kanaori K,Tajima K,Morii T,Makino K

    更新日期:2000-04-01 00:00:00

  • Determination of in vitro- and in vivo-formed DNA adducts of 2-amino-3-methylimidazo[4,5-f]quinoline by capillary liquid chromatography/microelectrospray mass spectrometry.

    abstract::Capillary liquid chromatography/microelectrospray mass spectrometry has been applied to the detection of deoxyribonucleoside adducts of the food-derived mutagen 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) from in vitro and in vivo sources. Constant neutral loss (CNL) and selective reaction monitoring (SRM) techniques...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx990060m

    authors: Gangl ET,Turesky RJ,Vouros P

    更新日期:1999-10-01 00:00:00

  • Role of P450 1A1 and P450 1A2 in bioactivation versus detoxication of the renal carcinogen aristolochic acid I: studies in Cyp1a1-/-, Cyp1a2-/-, and Cyp1a1/1a2-/- mice.

    abstract::Exposure to aristolochic acid I (AAI) is associated with aristolochic acid nephropathy, Balkan endemic nephropathy, and urothelial cancer. Individual differences in xenobiotic-metabolizing enzyme activities are likely to be a reason for interindividual susceptibility to AA-induced disease. We evaluated the reductive a...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx200259y

    authors: Arlt VM,Levová K,Bárta F,Shi Z,Evans JD,Frei E,Schmeiser HH,Nebert DW,Phillips DH,Stiborová M

    更新日期:2011-10-17 00:00:00

  • Ring addition of the alpha-amino group of glutathione increases the reactivity of benzoquinone thioethers.

    abstract::2-(Glutathion-S-yl)-1,4-benzoquinone was found to be remarkably unstable in phosphate buffer (pH 7.4) even in the absence of oxygen. Intramolecular addition of the alpha-amino group of the glutamate residue to the quinone ring yielded ultimately 2,3-(glutathion-N, S-yl)-1,4-benzoquinone and 2,6-(glutathion-N,S-yl)-1,4...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx9800699

    authors: Alt C,Eyer P

    更新日期:1998-10-01 00:00:00

  • Chemical Interaction of Protein Cysteine Residues with Reactive Metabolites of Methyleugenol.

    abstract::Methyleugenol (ME), an alkenylbenzene compound, is a natural ingredient of several herbs and is used as flavoring agent in foodstuffs and fragrance in cosmetics. The hepatotoxicity, cytotoxicity, and carcinogenesis of ME have been well documented, and metabolic activation has been suggested to involve in ME-induced to...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/acs.chemrestox.6b00290

    authors: Feng Y,Wang H,Wang Q,Huang W,Peng Y,Zheng J

    更新日期:2017-02-20 00:00:00

  • Arsenic exposure through drinking water is associated with longer telomeres in peripheral blood.

    abstract::Inorganic arsenic is a strong carcinogen, possibly by interaction with the telomere length. The aim of the study was to evaluate how chronic arsenic exposure from drinking water as well as the arsenic metabolism efficiency affect the individual telomere length and the expression of telomere-related genes. Two hundred ...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx300222t

    authors: Li H,Engström K,Vahter M,Broberg K

    更新日期:2012-11-19 00:00:00

  • Products and mechanism of the reaction of ozone with phospholipids in unilamellar phospholipid vesicles.

    abstract::While considerable effort has been expended on determining the health effects of exposure to typical urban concentrations of O3, little is known about the chemical events responsible for toxicity. Phospholipids containing unsaturated fatty acids in the cell membranes of lung cells are likely reaction sites for inhaled...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00025a023

    authors: Santrock J,Gorski RA,O'Gara JF

    更新日期:1992-01-01 00:00:00

  • Synthesis and sequence-specific DNA binding of a topoisomerase inhibitory analog of Hoechst 33258 designed for altered base and sequence recognition.

    abstract::The preparation and DNA binding characteristics of a structural analog of Hoechst 33258 bearing two pyridinic nitrogen atoms are described. The 1H NMR signals of the complex formed between the new ligand 1 and decadeoxyribonucleotide d(CATGGCCATG)2 were assigned by employing one- and two-dimensional NMR techniques. In...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00029a003

    authors: Singh MP,Joseph T,Kumar S,Bathini Y,Lown JW

    更新日期:1992-09-01 00:00:00

  • In vitro DNA deamination by alpha-nitrosaminoaldehydes determined by GC/MS-SIM quantitation.

    abstract::The deamination of DNA bases by three alpha-nitrosaminoaldehydes, butylethanalnitrosamine, methylethanalnitrosamine, and N-nitroso-2-hydroxymorpholine (NHMOR), the direct metabolite of potent animal carcinogen N-nitrosodiethanolamine, was demonstrated by a set of in vitro experiments. The deamination of guanine, adeni...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx990126d

    authors: Park M,Loeppky RN

    更新日期:2000-02-01 00:00:00

  • A comparison of the covalent binding of clozapine, procainamide, and vesnarinone to human neutrophils in vitro and rat tissues in vitro and in vivo.

    abstract::Covalent binding of drug reactive metabolites to neutrophils or their precursors is thought to play a role in the development of drug-induced agranulocytosis. In this study, we used immunochemical techniques to compare the covalent binding of clozapine, vesnarinone, and procainamide (three drugs associated with agranu...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx050095o

    authors: Gardner I,Popović M,Zahid N,Uetrecht JP

    更新日期:2005-09-01 00:00:00

  • Surface modification of quartz inhibits toxicity, particle uptake, and oxidative DNA damage in human lung epithelial cells.

    abstract::Quartz (crystalline silica) is not consistently carcinogenic across different industries where similar quartz exposure occurs. In addition, there are reports that surface modification of quartz affects its cytotoxicity, inflammogenicity, and fibrogenicity. Taken together, these data suggest that the carcinogenicity of...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx025558u

    authors: Schins RP,Duffin R,Höhr D,Knaapen AM,Shi T,Weishaupt C,Stone V,Donaldson K,Borm PJ

    更新日期:2002-09-01 00:00:00

  • Mechanisms of chlorophyllin anticarcinogenesis against aflatoxin B1: complex formation with the carcinogen.

    abstract::Chlorophyllin (CHL), a food-grade derivative of the green plant pigment chlorophyll, has recently been shown in this laboratory to be a potent inhibitor in vivo of hepatic aflatoxin B1 (AFB1)-DNA adduction and hepatocarcinogenesis (Breinholt et al. (1995) Cancer Res. 55, 57-62). We report here that CHL forms a strong ...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00046a004

    authors: Breinholt V,Schimerlik M,Dashwood R,Bailey G

    更新日期:1995-06-01 00:00:00

  • Drug metabolite-specific lymphocyte responses in sulfamethoxazole allergic patients with cystic fibrosis.

    abstract::Sulfamethoxazole (SMX) is an important antibiotic in the management of patients with cystic fibrosis, but allergic reactions may develop thus restricting therapy. The aim of this study was to utilize drug (metabolite) antigens to diagnose SMX-mediated allergic reactions in patients with cystic fibrosis. Lymphocytes fr...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx100151v

    authors: Lavergne SN,Whitaker P,Peckham D,Conway S,Park BK,Naisbitt DJ

    更新日期:2010-06-21 00:00:00

  • N-O Reduction and ROS-Mediated AKT/FOXO1 and AKT/P53 Pathways Are Involved in Growth Promotion and Cytotoxicity of Cyadox.

    abstract::Cyadox is a novel derivative of quinoxaline-1,4-dioxides (QdNOs) with the potential to be developed as a feed additive. However, the pharmacological and toxicological bioactive molecules of cyadox and the molecular mechanism of its pharmacological and toxic actions remain unclear. In the present study, cyadox and its ...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/acs.chemrestox.8b00194

    authors: Liu Q,Lei Z,Zhou K,Yu H,Liu S,Sun Q,Wang X,Dai M,Yuan Z

    更新日期:2018-11-19 00:00:00

  • Structure-toxicity relationships for the effects to Tetrahymena pyriformis of aliphatic, carbonyl-containing, alpha,beta-unsaturated chemicals.

    abstract::Toxicity data for 82 aliphatic chemicals with an alpha,beta-unsaturated substructure were compiled. Toxicity was assessed in the 2-day Tetrahymena pyriformis population growth impairment assay. Toxic potency [log(IGC50(-1))] for most of these chemicals was in excess of baseline narcosis as quantified by the 1-octanol/...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx049833j

    authors: Schultz TW,Netzeva TI,Roberts DW,Cronin MT

    更新日期:2005-02-01 00:00:00

  • Carboxylate Counteranions in Electronic Cigarette Liquids: Influence on Nicotine Emissions.

    abstract::The wide pH range reported for electronic cigarette (ECIG) liquids indicates that nicotine may be present in one or more chemical forms. The nicotine form affects the bioavailability and delivery of nicotine from inhaled products. Protonated nicotine is normally associated with counteranions in tobacco products. The c...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/acs.chemrestox.7b00090

    authors: El-Hellani A,El-Hage R,Salman R,Talih S,Shihadeh A,Saliba NA

    更新日期:2017-08-21 00:00:00

  • Identification of tamoxifen-DNA adducts formed by alpha-sulfate tamoxifen and alpha-acetoxytamoxifen.

    abstract::alpha-Sulfate trans-tamoxifen and alpha-sulfate cis-tamoxifen were synthesized as proposed active metabolites of tamoxifen that react with DNA. alpha-Acetoxytamoxifen was prepared as a model-activated form to produce a reactive carbocation. Calf thymus DNA was reacted with alpha-hydroxytamoxifen or the activated forms...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx960114h

    authors: Dasaradhi L,Shibutani S

    更新日期:1997-02-01 00:00:00

  • Studies on 4-benzyl-1-methyl-1,2,3,6-tetrahydropyridine, a nonneurotoxic analogue of the parkinsonian inducing agent 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.

    abstract::Previous reports indicate that 4-benzyl-1-methyl-1,2,3,6-tetrahydropyridine (BMTP), the benzyl analogue of the Parkinsonian inducing neurotoxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP), is not neurotoxic in the C-57 black mouse even when administered at a dose 10 times greater than the dose of MPTP required...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx00014a008

    authors: Naiman N,Rollema H,Johnson E,Castagnoli N Jr

    更新日期:1990-03-01 00:00:00

  • Detection and characterization of a glutathione conjugate of ochratoxin A.

    abstract::The ability of the carcinogenic mycotoxin ochratoxin A (OTA) to react with reduced glutathione (GSH) has been assessed using electrospray ionization (ES)-MS techniques. On the basis of the assumption that OTA undergoes biotransformation into the reactive quinone species OTQ (6), a synthetic sample of the reduced form ...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx0255929

    authors: Dai J,Park G,Wright MW,Adams M,Akman SA,Manderville RA

    更新日期:2002-12-01 00:00:00

  • The detection and identification of 42,43,44,45,46,47,55-heptanor-41-oxoyessotoxin, a new marine toxin from adriatic shellfish, by liquid chromatography-mass spectrometry.

    abstract::The diarrhetic shellfish toxin composition in the digestive glands of mussels collected in June 2001 from the Northern Adriatic sea was investigated by high-performance liquid chromatography coupled with electrospray ion trap mass spectrometry. Along with known yessotoxins (1, 3-6), identified by comparison of their r...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx025527z

    authors: Ciminiello P,Dell'Aversano C,Fattorusso E,Forino M,Magno S,Poletti R

    更新日期:2002-07-01 00:00:00

  • Comparison of crystal structure and theory for 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine.

    abstract::The crystal structure of the food mutagen 2-amino-1-methyl-6-phenylimidazo[4,5-b] pyridine (PhIP) has been determined by single-crystal X-ray crystallography. Crystals grown by evaporation of an aqueous solution form in the monoclinic space group P2(1)/n with two molecules of PhIP per asymmetric unit, along with six w...

    journal_title:Chemical research in toxicology

    pub_type: 杂志文章

    doi:10.1021/tx950168b

    authors: Parkin S,Marsch GA,Hope H,Whitney E,Winter NW,Colvin ME,Felton JS,Turteltaub KW

    更新日期:1996-04-01 00:00:00