Abstract:
:The number of RNA-Seq studies has grown in recent years. The design of RNA-Seq studies varies from very simple (e.g., two-condition case-control) to very complicated (e.g., time series involving multiple samples at each time point with separate drug treatments). Most of these publically available RNA-Seq studies are deposited in NCBI databases, but their metadata are scattered throughout four different databases: Sequence Read Archive (SRA), Biosample, Bioprojects, and Gene Expression Omnibus (GEO). Although the NCBI web interface is able to provide all of the metadata information, it often requires significant effort to retrieve study- or project-level information by traversing through multiple hyperlinks and going to another page. Moreover, project- and study-level metadata lack manual or automatic curation by categories, such as disease type, time series, case-control, or replicate type, which are vital to comprehending any RNA-Seq study. Here we describe "MetaRNA-Seq," a new tool for interactively browsing, searching, and annotating RNA-Seq metadata with the capability of semiautomatic curation at the study level.
journal_name
Biomed Res Intjournal_title
BioMed research internationalauthors
Kumar P,Halama A,Hayat S,Billing AM,Gupta M,Yousri NA,Smith GM,Suhre Kdoi
10.1155/2015/318064subject
Has Abstractpub_date
2015-01-01 00:00:00pages
318064eissn
2314-6133issn
2314-6141journal_volume
2015pub_type
杂志文章abstract::The aim of this study was to determine if altered levels of selected trace elements manifest themselves during chronic depression. To identify elements strongly associated with chronic depression, relationships between the elemental contents of hair and nails and the interelement correlations were checked. Inductively...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2017/3178784
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journal_title:BioMed research international
pub_type: 杂志文章
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doi:10.1155/2013/602871
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pub_type: 杂志文章,评审
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doi:10.1155/2014/850316
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pub_type: 杂志文章
doi:10.1155/2016/2568301
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pub_type: 杂志文章
doi:10.1155/2014/951978
更新日期:2014-01-01 00:00:00
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pub_type: 杂志文章
doi:10.1155/2013/916136
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doi:10.1155/2020/4827045
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journal_title:BioMed research international
pub_type: 杂志文章,meta分析,评审
doi:10.1155/2016/6040379
更新日期:2016-01-01 00:00:00
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journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2018/6817832
更新日期:2018-03-14 00:00:00
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doi:10.1155/2016/6315846
更新日期:2016-01-01 00:00:00
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pub_type: 杂志文章
doi:10.1155/2019/7485409
更新日期:2019-07-01 00:00:00
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pub_type: 临床试验,杂志文章,多中心研究
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pub_type: 杂志文章,撤回出版物
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pub_type: 杂志文章
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