H3K36ac Is an Evolutionary Conserved Plant Histone Modification That Marks Active Genes.

Abstract:

:In eukaryotic cells, histones are subject to a large number of posttranslational modifications whose sequential or combinatorial action affects chromatin structure and genome function. We identified acetylation at Lys-36 in histone H3 (H3K36ac) as a new chromatin modification in plants. The H3K36ac modification is evolutionary conserved in seed plants, including the gymnosperm Norway spruce (Picea abies) and the angiosperms rice (Oryza sativa), tobacco (Nicotiana tabacum), and Arabidopsis (Arabidopsis thaliana). In Arabidopsis, H3K36ac is highly enriched in euchromatin but not in heterochromatin. Genome-wide chromatin immunoprecipitation sequencing experiments revealed that H3K36ac peaks at the 5' end of genes, mainly on the two nucleosomes immediately distal to the transcription start site, independently of gene length. H3K36ac overlaps with H3K4me3 and the H2A.Z histone variant. The histone acetyl transferase GCN5 and the histone deacetylase HDA19 are required for H3K36ac homeostasis. H3K36ac and H3K36me3 show negative crosstalk, which is mediated by GCN5 and the histone methyl transferase SDG8. Although H3K36ac is associated with gene activity, we did not find a linear relationship between H3K36ac and transcript levels, suggesting that H3K36ac is a binary indicator of transcription.

journal_name

Plant Physiol

journal_title

Plant physiology

authors

Mahrez W,Arellano MS,Moreno-Romero J,Nakamura M,Shu H,Nanni P,Köhler C,Gruissem W,Hennig L

doi

10.1104/pp.15.01744

subject

Has Abstract

pub_date

2016-03-01 00:00:00

pages

1566-77

issue

3

eissn

0032-0889

issn

1532-2548

pii

pp.15.01744

journal_volume

170

pub_type

杂志文章
  • Elicitation of Necrosis in Vigna unguiculata Walp. by Homogeneous Aspergillus niger Endo-Polygalacturonase and by alpha-d-Galacturonate Oligomers.

    abstract::Endo-polygalacturonase (PG) was purified from a commercial preparation of Aspergillus niger pectinase by means of carboxymethylcellulose chromatography, preparative isoelectric focusing, and gel permeation through Sephadex G-50. The enzyme was electrophoretically homogeneous and consisted of a single polypeptide chain...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.85.3.626

    authors: Cervone F,De Lorenzo G,Degrà L,Salvi G

    更新日期:1987-11-01 00:00:00

  • Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family.

    abstract::The wall-associated kinase (WAK) gene family, one of the receptor-like kinase (RLK) gene families in plants, plays important roles in cell expansion, pathogen resistance, and heavy-metal stress tolerance in Arabidopsis (Arabidopsis thaliana). Through a reiterative database search and manual reannotation, we identified...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.105.069005

    authors: Zhang S,Chen C,Li L,Meng L,Singh J,Jiang N,Deng XW,He ZH,Lemaux PG

    更新日期:2005-11-01 00:00:00

  • Phytoalexin Elicitor Activity of Carbohydrates from Phytophthora megasperma f.sp. glycinea and Other Sources.

    abstract::Three unique classes of carbohydrates were isolated from the hyphal cell walls of Phytophthora megasperma f.sp. glycinea (Pmg) and compared with other substances for their activity as elicitors of the phytoalexin glyceollin in soybean tissues. Glucomannans extracted from cell walls with soybean beta-1,3-endoglucanase ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.71.3.466

    authors: Keen NT,Yoshikawa M,Wang MC

    更新日期:1983-03-01 00:00:00

  • Chemical and Biophysical Changes in the Plasma Membrane during Cold Acclimation of Mulberry Bark Cells (Morus bombycis Koidz. cv Goroji).

    abstract::The lipid and protein composition of the plasma membrane isolated from mulberry (Morus bombycis Koidz.) bark cells was analyzed throughout the cold acclimation period under natural and controlled environment conditions. There was a significant increase in phospholipids and unsaturation of their fatty acids during cold...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.76.1.257

    authors: Yoshida S

    更新日期:1984-09-01 00:00:00

  • Genetic and genomic evidence that sucrose is a global regulator of plant responses to phosphate starvation in Arabidopsis.

    abstract::Plants respond to phosphate (Pi) starvation by exhibiting a suite of developmental, biochemical, and physiological changes to cope with this nutritional stress. To understand the molecular mechanism underlying these responses, we isolated an Arabidopsis (Arabidopsis thaliana) mutant, hypersensitive to phosphate starva...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.110.171736

    authors: Lei M,Liu Y,Zhang B,Zhao Y,Wang X,Zhou Y,Raghothama KG,Liu D

    更新日期:2011-07-01 00:00:00

  • Accumulation of Group 3 Late Embryogenesis Abundant Proteins in Zea mays Embryos : Roles of Abscisic Acid and the Viviparous-1 Gene Product.

    abstract::Several different types of proteins that are modulated by abscisic acid (ABA) accumulate in developing embryos of maize (Zea mays L.). Some of these proteins are specific to the developing seed, such as the storage globulin, GLB1, whereas others are involved in general responses to water deficit. Here we describe a ma...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.99.2.607

    authors: Thomann EB,Sollinger J,White C,Rivin CJ

    更新日期:1992-06-01 00:00:00

  • The U-Box/ARM E3 ligase PUB13 regulates cell death, defense, and flowering time in Arabidopsis.

    abstract::The components in plant signal transduction pathways are intertwined and affect each other to coordinate plant growth, development, and defenses to stresses. The role of ubiquitination in connecting these pathways, particularly plant innate immunity and flowering, is largely unknown. Here, we report the dual roles for...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.111.192617

    authors: Li W,Ahn IP,Ning Y,Park CH,Zeng L,Whitehill JG,Lu H,Zhao Q,Ding B,Xie Q,Zhou JM,Dai L,Wang GL

    更新日期:2012-05-01 00:00:00

  • Kinetin increases water permeability of phosphatidylcholine lipid bilayers.

    abstract::Kinetin is shown to increase substantially the water permeability of liposomes composed of several types of phosphatidylcholines including the natural phospholipids egg lecithin and asolectin and the synthetic phospholipids dimyristoylphosphatidylcholine and dipalmitoylphosphatidylcholine. Kinetin effects were measure...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.71.3.524

    authors: Stillwell W,Hester P

    更新日期:1983-03-01 00:00:00

  • Evidence for the Contribution of the Mehler-Peroxidase Reaction in Dissipating Excess Electrons in Drought-Stressed Wheat.

    abstract::Gross O2 evolution and uptake by attached, drought-stressed leaves of wheat (Triticum aestivum) were measured using a 16O2/ 18O2 isotope technique and mass spectrometry. The activity of photosystem II, determined from the rate of 16O2 evolution, is only slightly affected under drought conditions. During drought stress...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.112.1.265

    authors: Biehler K,Fock H

    更新日期:1996-09-01 00:00:00

  • Leakage of Dhurrin and p-Hydroxybenzaldehyde from Young Sorghum Shoots Immersed in Various Solvents.

    abstract::Spectral scanning was used to provide estimates of the leakage of the cyanogenic glucoside, dhurrin (p-hydroxy-[S]-mandelonitrile-beta-d-glucoside), and its metabolite, p-hydroxybenzaldehyde (p-HB), from young light-grown shoots of Atlas sorghum (Sorghum bicolor [L.] Moench) when these shoots were immersed in water, t...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.75.3.869

    authors: Haskins FA,Gorz HJ

    更新日期:1984-07-01 00:00:00

  • Biosynthesis of Indoleacetic Acid from Tryptophan-C in Cell-free Extracts of Pea Shoot Tips.

    abstract::A 2-step, 1-dimensional thin-layer chromatographic procedure for isolating indoleacetic acid (IAA) was developed and utilized in investigations of the biosynthesis of IAA from tryptophan-(14)C in cell-free extracts of pea (Pisum sativum L.) shoot tips. Identification of a (14)C-product as IAA was by (a) co-chromatogra...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.42.12.1787

    authors: Moore TC,Shaner CA

    更新日期:1967-12-01 00:00:00

  • Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence.

    abstract::The functions of mitochondria during leaf senescence, a type of programmed cell death aimed at the massive retrieval of nutrients from the senescing organ to the rest of the plant, remain elusive. Here, combining experimental and analytical approaches, we showed that mitochondrial integrity in Arabidopsis (Arabidopsis...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.16.01463

    authors: Chrobok D,Law SR,Brouwer B,Lindén P,Ziolkowska A,Liebsch D,Narsai R,Szal B,Moritz T,Rouhier N,Whelan J,Gardeström P,Keech O

    更新日期:2016-12-01 00:00:00

  • The effect of sucrose on the differentiation of excised fern leaf tissue into either gametophytes of sporophytes.

    abstract::Excised juvenile leaves of Microgramma vacciniifolia (Polypodiaceae) develop sporophytic regenerants when grown on mineral agar with sucrose. The ratio of sporophytes to gametophytes produced from the leaf tissue increases with higher percentages of sucrose such that at 4% sucrose, the induction of aposporous gametoph...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.56.3.390

    authors: Hirsch AM

    更新日期:1975-09-01 00:00:00

  • The binding of auxin to the Arabidopsis auxin influx transporter AUX1.

    abstract::The cellular import of the hormone auxin is a fundamental requirement for the generation of auxin gradients that control a multitude of plant developmental processes. The AUX/LAX family of auxin importers, exemplified by AUX1 from Arabidopsis (Arabidopsis thaliana), has been shown to mediate auxin import when expresse...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.108.122044

    authors: Carrier DJ,Bakar NT,Swarup R,Callaghan R,Napier RM,Bennett MJ,Kerr ID

    更新日期:2008-09-01 00:00:00

  • Herbivore-induced defense response in a model legume. Two-spotted spider mites induce emission of (E)-beta-ocimene and transcript accumulation of (E)-beta-ocimene synthase in Lotus japonicus.

    abstract::Indirect defense of plants against herbivores often involves the induced emission of volatile infochemicals including terpenoids that attract natural enemies of the herbivores. We report the isolation and characterization of a terpene synthase cDNA (LjEbetaOS) from a model legume, Lotus japonicus. Recombinant LjEbetaO...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.104.042929

    authors: Arimura G,Ozawa R,Kugimiya S,Takabayashi J,Bohlmann J

    更新日期:2004-08-01 00:00:00

  • Glyphosate-resistant goosegrass. Identification of a mutation in the target enzyme 5-enolpyruvylshikimate-3-phosphate synthase.

    abstract::The spontaneous occurrence of resistance to the herbicide glyphosate in weed species has been an extremely infrequent event, despite over 20 years of extensive use. Recently, a glyphosate-resistant biotype of goosegrass (Eleusine indica) was identified in Malaysia exhibiting an LD(50) value approximately 2- to 4-fold ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.001560

    authors: Baerson SR,Rodriguez DJ,Tran M,Feng Y,Biest NA,Dill GM

    更新日期:2002-07-01 00:00:00

  • beta-Conglycinins in Developing Soybean Seeds.

    abstract::The temporal sequence of development of the major proteins of seeds of soybean (Merr.) has been studied during development of cotyledons from flowering to maturity. A well-defined difference occurred in the times of appearance and the periods of maximum accumulation of alpha, alpha'-, and beta-subunits of betaconglyci...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.67.5.958

    authors: Gayler KR,Sykes GE

    更新日期:1981-05-01 00:00:00

  • Molecular and functional analyses support a role of Ornithine-{delta}-aminotransferase in the provision of glutamate for glutamine biosynthesis during pine germination.

    abstract::We report the molecular characterization and functional analysis of a gene (PsdeltaOAT) from Scots pine (Pinus sylvestris) encoding Orn-delta-aminotransferase (delta-OAT; EC 2.6.1.13), an enzyme of arginine metabolism. The deduced amino acid sequence contains a putative N-terminal signal peptide for mitochondrial targ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.108.122853

    authors: Cañas RA,Villalobos DP,Díaz-Moreno SM,Cánovas FM,Cantón FR

    更新日期:2008-09-01 00:00:00

  • Characterization and subcellular compartmentation of recombinant 4-hydroxyphenylpyruvate dioxygenase from Arabidopsis in transgenic tobacco.

    abstract::4-Hydroxyphenylpyruvate dioxygenase (4HPPD) catalyzes the formation of homogentisate (2,5-dihydroxyphenylacetate) from p-hydroxyphenylpyruvate and molecular oxygen. In plants this enzyme activity is involved in two distinct metabolic processes, the biosynthesis of prenylquinones and the catabolism of tyrosine. We repo...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.119.4.1507

    authors: Garcia I,Rodgers M,Pepin R,Hsieh TF,Matringe M

    更新日期:1999-04-01 00:00:00

  • EARLY FLOWERING 4 functions in phytochrome B-regulated seedling de-etiolation.

    abstract::To define the functions of genes previously identified by expression profiling as being rapidly light induced under phytochrome (phy) control, we are investigating the seedling de-etiolation phenotypes of mutants carrying T-DNA insertional disruptions at these loci. Mutants at one such locus displayed reduced responsi...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.103.030007

    authors: Khanna R,Kikis EA,Quail PH

    更新日期:2003-12-01 00:00:00

  • Ice-cap. A high-throughput method for capturing plant tissue samples for genotype analysis.

    abstract::High-throughput genotype screening is rapidly becoming a standard research tool in the post-genomic era. A major bottleneck currently exists, however, that limits the utility of this approach in the plant sciences. The rate-limiting step in current high-throughput pipelines is that tissue samples from living plants mu...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.104.040774

    authors: Krysan P

    更新日期:2004-07-01 00:00:00

  • Regulation of a Cytochrome P450 Gene CYP94B1 by WRKY33 Transcription Factor Controls Apoplastic Barrier Formation in Roots to Confer Salt Tolerance.

    abstract::Salinity is an environmental stress that causes decline in crop yield. Avicennia officinalis and other mangroves have adaptations such as ultrafiltration at the roots aided by apoplastic cell wall barriers to thrive in saline conditions. We studied a cytochrome P450 gene from A. officinalis, AoCYP94B1, and its putativ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.20.01054

    authors: Krishnamurthy P,Vishal B,Ho WJ,Lok FCJ,Lee FSM,Kumar PP

    更新日期:2020-12-01 00:00:00

  • Effect of salt on auxin-induced acidification and growth by pea internode sections.

    abstract::The capacity of excised internode sections of pea to grow and secrete protons in response to indoleacetic acid (IAA) and Ca(2+) and K(+) treatments was examined. By incubating unpeeled and unabraded sections in rapidly flowing solutions, it was shown that acidification of the external medium in the presence or absence...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.68.1.59

    authors: Terry ME,Jones RL

    更新日期:1981-07-01 00:00:00

  • Arabidopsis mitogen-activated protein kinase kinases MKK1 and MKK2 have overlapping functions in defense signaling mediated by MEKK1, MPK4, and MKS1.

    abstract::The Arabidopsis (Arabidopsis thaliana) MKK1 and MKK2 mitogen-activated protein kinase kinases have been implicated in biotic and abiotic stress responses as part of a signaling cascade including MEKK1 and MPK4. Here, the double loss-of-function mutant (mkk1/2) of MKK1 and MKK2 is shown to have marked phenotypes in dev...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.108.120006

    authors: Qiu JL,Zhou L,Yun BW,Nielsen HB,Fiil BK,Petersen K,Mackinlay J,Loake GJ,Mundy J,Morris PC

    更新日期:2008-09-01 00:00:00

  • Calcium-Dependent Protein Phosphorylation May Mediate the Gibberellic Acid Response in Barley Aleurone

    abstract::Peptide substrates of well-defined protein kinases were microinjected into aleurone protoplasts of barley (Hordeum vulgare L. cv Himalaya) to inhibit, and therefore identify, protein kinase-regulated events in the transduction of the gibberellin (GA) and abscisic acid signals. Syntide-2, a substrate designed for Ca2+-...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.116.2.765

    authors: Ritchie S,Gilroy S

    更新日期:1998-02-01 00:00:00

  • Large Cellular Inclusions Accumulate in Arabidopsis Roots Exposed to Low-Sulfur Conditions.

    abstract::Sulfur is vital for primary and secondary metabolism in plant roots. To understand the molecular and morphogenetic changes associated with loss of this key macronutrient, we grew Arabidopsis (Arabidopsis thaliana) seedlings in low-sulfur conditions. These conditions induced a cascade of cellular events that converged ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.15.00465

    authors: Jackson TL,Baker GW,Wilks FR Jr,Popov VA,Mathur J,Benfey PN

    更新日期:2015-08-01 00:00:00

  • Endogenous abscisic acid as a key switch for natural variation in flooding-induced shoot elongation.

    abstract::Elongation of leaves and stem is a key trait for survival of terrestrial plants during shallow but prolonged floods that completely submerge the shoot. However, natural floods at different locations vary strongly in duration and depth, and, therefore, populations from these locations are subjected to different selecti...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.110.162792

    authors: Chen X,Pierik R,Peeters AJ,Poorter H,Visser EJ,Huber H,de Kroon H,Voesenek LA

    更新日期:2010-10-01 00:00:00

  • AtNUDT7, a negative regulator of basal immunity in Arabidopsis, modulates two distinct defense response pathways and is involved in maintaining redox homeostasis.

    abstract::Plants have evolved complicated regulatory systems to control immune responses. Both positive and negative signaling pathways interplay to coordinate development of a resistance response with the appropriate amplitude and duration. AtNUDT7, a Nudix domain-containing protein in Arabidopsis (Arabidopsis thaliana) that h...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.107.103374

    authors: Ge X,Li GJ,Wang SB,Zhu H,Zhu T,Wang X,Xia Y

    更新日期:2007-09-01 00:00:00

  • Involvement of Free Calcium in Action of Cryptogein, a Proteinaceous Elicitor of Hypersensitive Reaction in Tobacco Cells.

    abstract::Treatment of suspension-cultured tobacco (Nicotiana tabacum var Xanthi) cells with cryptogein, a proteinaceous elicitor from Phytophthora cryptogea, induced a great stimulation of Ca2+ influx within the first minutes. Ca2+ influx is essential for the initiation of cryptogein-induced responses, since ethyleneglycol-bis...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.3.1025

    authors: Tavernier E,Wendehenne D,Blein JP,Pugin A

    更新日期:1995-11-01 00:00:00

  • Pollen Tube Discharge Completes the Process of Synergid Degeneration That Is Initiated by Pollen Tube-Synergid Interaction in Arabidopsis.

    abstract::In flowering plant reproduction, pollen tube reception is the signaling system that results in pollen tube discharge, synergid degeneration, and successful delivery of male gametes (two sperm cells) to the site where they can fuse with female gametes (egg cell and central cell). Some molecules required for this comple...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.15.00528

    authors: Leydon AR,Tsukamoto T,Dunatunga D,Qin Y,Johnson MA,Palanivelu R

    更新日期:2015-09-01 00:00:00