Mechanics and Single-Molecule Interrogation of DNA Recombination.

abstract：:Over the past three decades, studies of ancient biomolecules-particularly ancient DNA, proteins, and lipids-have revolutionized our understanding of evolutionary history. Though initially fraught with many challenges, today the field stands on firm foundations. Researchers now successfully retrieve nucleotide and amin...

journal_title：Annual review of biochemistry

authors： Cappellini E,Prohaska A,Racimo F,Welker F,Pedersen MW,Allentoft ME,de Barros Damgaard P,Gutenbrunner P,Dunne J,Hammann S,Roffet-Salque M,Ilardo M,Moreno-Mayar JV,Wang Y,Sikora M,Vinner L,Cox J,Evershed RP,Willerslev E

更新日期：2018-06-20 00:00:00

abstract：:Phylum Apicomplexa comprises a large group of obligate intracellular parasites of high medical and veterinary importance. These organisms succeed intracellularly by effecting remarkable changes in a broad range of diverse host cells. The transformation of the host erythrocyte is particularly striking in the case of th...

journal_title：Annual review of biochemistry

authors： Spillman NJ,Beck JR,Goldberg DE

更新日期：2015-01-01 00:00:00

abstract：:Staphylococcus aureus is a major human and veterinary pathogen worldwide. Methicillin-resistant S. aureus (MRSA) poses a significant and enduring problem to the treatment of infection by such strains. Resistance is usually conferred by the acquisition of a nonnative gene encoding a penicillin-binding protein (PBP2a), ...

journal_title：Annual review of biochemistry

authors： Peacock SJ,Paterson GK

更新日期：2015-01-01 00:00:00

abstract：:The past few years have seen exciting advances in understanding the structure and function of catalytic RNA. Crystal structures of several ribozymes have provided detailed insight into the folds of RNA molecules. Models of other biologically important RNAs have been constructed based on structural, phylogenetic, and b...

journal_title：Annual review of biochemistry

authors： Doherty EA,Doudna JA

更新日期：2000-01-01 00:00:00

abstract：:The bacterial TolC protein plays a common role in the expulsion of diverse molecules, which include protein toxins and antibacterial drugs, from the cell. TolC is a trimeric 12-stranded alpha/beta barrel, comprising an alpha-helical trans-periplasmic tunnel embedded in the outer membrane by a contiguous beta-barrel ch...

journal_title：Annual review of biochemistry

authors： Koronakis V,Eswaran J,Hughes C

更新日期：2004-01-01 00:00:00

abstract：:In response to microbial infection, the human host deploys metal-sequestering host-defense proteins, which reduce nutrient availability and thereby inhibit microbial growth and virulence. Calprotectin (CP) is an abundant antimicrobial protein released from neutrophils and epithelial cells at sites of infection. CP seq...

journal_title：Annual review of biochemistry

authors： Zygiel EM,Nolan EM

更新日期：2018-06-20 00:00:00

abstract：:Experimental analysis of enzymatic transition-state structures uses kinetic isotope effects (KIEs) to report on bonding and geometry differences between reactants and the transition state. Computational correlation of experimental values with chemical models permits three-dimensional geometric and electrostatic assign...

journal_title：Annual review of biochemistry

authors： Schramm VL

更新日期：2011-01-01 00:00:00

abstract：:The lipid A moiety of lipopolysaccharide forms the outer monolayer of the outer membrane of most gram-negative bacteria. Escherichia coli lipid A is synthesized on the cytoplasmic surface of the inner membrane by a conserved pathway of nine constitutive enzymes. Following attachment of the core oligosaccharide, nascen...

journal_title：Annual review of biochemistry

authors： Raetz CR,Reynolds CM,Trent MS,Bishop RE

更新日期：2007-01-01 00:00:00

abstract：:D-amino acids have been detected in a variety of peptides synthesized by animal cells. These include opiate and antimicrobial peptides from amphibian skin, neuropeptides from snail ganglia, a hormone from crustaceans, and a constituent of a spider venom. cDNA cloning has shown that at those positions where a D-amino a...

journal_title：Annual review of biochemistry

authors： Kreil G

更新日期：1997-01-01 00:00:00

abstract：:The field of vitamin D metabolism and mechanism of action has continued to be very active. Autoradiography has shown specific nuclear localization of 1,25-(OH)2D3 in target organs prior to initiation of mechanism of action. Specific nuclear localization has also been demonstrated in a variety of other tissues not prev...

journal_title：Annual review of biochemistry

authors： DeLuca HF,Schnoes HK

更新日期：1983-01-01 00:00:00

abstract：:Central to the classical hematopoietic stem cell (HSC) paradigm is the concept that the maintenance of blood cell numbers is exclusively executed by a discrete physical entity: the transplantable HSC. The HSC paradigm has served as a stereotypic template in stem cell biology, yet the search for rare, hardwired profess...

journal_title：Annual review of biochemistry

authors： Clevers H,Watt FM

更新日期：2018-06-20 00:00:00

abstract：:My coworkers and I have used animal viruses and their interaction with host cells to investigate cellular processes difficult to study by other means. This approach has allowed us to branch out in many directions, including membrane protein characterization, endocytosis, secretion, protein folding, quality control, an...

journal_title：Annual review of biochemistry

authors： Helenius A

更新日期：2020-06-20 00:00:00

abstract：:Analysis of the human genome reveals that approximately a third of all open reading frames code for proteins that enter the endoplasmic reticulum (ER), demonstrating the importance of this organelle for global protein maturation. The path taken by a polypeptide through the secretory pathway starts with its translocati...

journal_title：Annual review of biochemistry

authors： Braakman I,Bulleid NJ

更新日期：2011-01-01 00:00:00

abstract：:The peptidoglycan biosynthetic pathway is a critical process in the bacterial cell and is exploited as a target for the design of antibiotics. This pathway culminates in the production of the peptidoglycan layer, which is composed of polymerized glycan chains with cross-linked peptide substituents. This layer forms th...

journal_title：Annual review of biochemistry

authors： Lovering AL,Safadi SS,Strynadka NC

更新日期：2012-01-01 00:00:00

abstract：:The RNA polymerase II transcription cycle is often divided into three major stages: initiation, elongation, and termination. Research over the last decade has blurred these divisions and emphasized the tightly regulated transitions that occur as RNA polymerase II synthesizes a transcript from start to finish. Transcri...

journal_title：Annual review of biochemistry

authors： Arndt KM,Reines D

更新日期：2015-01-01 00:00:00

abstract：:The fastest simple, kinetically two-state protein folds a million times more rapidly than the slowest. Here we review many recent theories of protein folding kinetics in terms of their ability to qualitatively rationalize, if not quantitatively predict, this fundamental experimental observation. ...

journal_title：Annual review of biochemistry

authors： Gillespie B,Plaxco KW

更新日期：2004-01-01 00:00:00

abstract：:Magic angle spinning (MAS) NMR studies of amyloid and membrane proteins and large macromolecular complexes are an important new approach to structural biology. However, the applicability of these experiments, which are based on (13)C- and (15)N-detected spectra, would be enhanced if the sensitivity were improved. Here...

journal_title：Annual review of biochemistry

authors： Su Y,Andreas L,Griffin RG

更新日期：2015-01-01 00:00:00

abstract：:Active transport between the nucleus and cytoplasm involves primarily three classes of macromolecules: substrates, adaptors, and receptors. Some transport substrates bind directly to an import or an export receptor while others require one or more adaptors to mediate formation of a receptor-substrate complex. Once ass...

journal_title：Annual review of biochemistry

authors： Mattaj IW,Englmeier L

更新日期：1998-01-01 00:00:00

abstract：:Proteins are increasingly used in basic and applied biomedical research. Many proteins, however, are only marginally stable and can be expressed in limited amounts, thus hampering research and applications. Research has revealed the thermodynamic, cellular, and evolutionary principles and mechanisms that underlie marg...

journal_title：Annual review of biochemistry

authors： Goldenzweig A,Fleishman SJ

更新日期：2018-06-20 00:00:00

abstract：:Given the functional importance of the endoplasmic reticulum (ER), an organelle that performs folding, modification, and trafficking of secretory and membrane proteins to the Golgi compartment, the maintenance of ER homeostasis in insulin-secreting β-cells is very important. When ER homeostasis is disrupted, the ER ge...

journal_title：Annual review of biochemistry

authors： Back SH,Kaufman RJ

更新日期：2012-01-01 00:00:00

abstract：:This review focuses on molecular mechanisms that underlie the communication between the nuclear and mitochondrial genomes in eukaryotic cells. These genomes interact in at least two ways. First, they contribute essential subunit polypeptides to important mitochondrial proteins; second, they collaborate in the synthesi...

journal_title：Annual review of biochemistry

authors： Poyton RO,McEwen JE

更新日期：1996-01-01 00:00:00

abstract：:DNA molecules are able to transport electrons over long distances. In most experiments the process is stimulated by the oxidation of guanines (G), which generates guanine radical cations. The electron transport through DNA occurs in a multistep hopping mechanism with all Gs as carriers of the positive charge. The rate...

journal_title：Annual review of biochemistry

authors： Giese B

更新日期：2002-01-01 00:00:00

abstract：:Cys2His2 zinc finger proteins offer a stable and versatile framework for the design of proteins that recognize desired target sites on double-stranded DNA. Individual fingers from these proteins have a simple beta beta alpha structure that folds around a central zinc ion, and tandem sets of fingers can contact neighbo...

journal_title：Annual review of biochemistry

authors： Pabo CO,Peisach E,Grant RA

更新日期：2001-01-01 00:00:00

abstract：:Several genes have been identified for monogenic disorders that variably resemble Parkinson's disease. Dominant mutations in the gene encoding alpha-synuclein enhance the propensity of this protein to aggregate. As a consequence, these patients have a widespread disease with protein inclusion bodies in several brain a...

journal_title：Annual review of biochemistry

authors： Cookson MR

更新日期：2005-01-01 00:00:00

abstract：:Many critical biological processes take place at hydrophobic:hydrophilic interfaces, and a wide range of organisms produce surface-active proteins and peptides that reduce surface and interfacial tension and mediate growth and development at these boundaries. Microorganisms produce both small lipid-associated peptides...

journal_title：Annual review of biochemistry

authors： Sunde M,Pham CLL,Kwan AH

更新日期：2017-06-20 00:00:00

abstract：:Microtubules are polymers that are essential for, among other functions, cell transport and cell division in all eukaryotes. The regulation of the microtubule system includes transcription of different tubulin isotypes, folding of /¿-tubulin heterodimers, post-translation modification of tubulin, and nucleotide-based ...

journal_title：Annual review of biochemistry

authors： Nogales E

更新日期：2000-01-01 00:00:00

abstract：:Prenylation is a class of lipid modification involving covalent addition of either farnesyl (15-carbon) or geranylgeranyl (20-carbon) isoprenoids to conserved cysteine residues at or near the C-terminus of proteins. Known prenylated proteins include fungal mating factors, nuclear lamins, Ras and Ras-related GTP-bindin...

journal_title：Annual review of biochemistry

authors： Zhang FL,Casey PJ

更新日期：1996-01-01 00:00:00

abstract：:Inactivation of the transcription factor p53, through either direct mutation or aberrations in one of its many regulatory pathways, is a hallmark of virtually every tumor. In recent years, screening for p53 activators and a better understanding of the molecular mechanisms of oncogenic perturbations of p53 function hav...

journal_title：Annual review of biochemistry

authors： Joerger AC,Fersht AR

更新日期：2016-06-02 00:00:00

abstract：:Mechanisms of chemical reaction can often be predicted by determining the dependence of the lifetime of reaction intermediates on the structure of the reactants. When there is no lifetime in the presence of another reactant or catalyst the reaction proceeds through an enforced concerted mechanism. Noncovalent binding ...

journal_title：Annual review of biochemistry

authors： Jencks WP

更新日期：1997-01-01 00:00:00

abstract：:Alterations of chromatin structure have been shown to be crucial for response to cell signaling and for programmed gene expression in development. Posttranslational histone modifications influence changes in chromatin structure both directly and by targeting or activating chromatin-remodeling complexes. Histone modifi...

journal_title：Annual review of biochemistry

authors： Suganuma T,Workman JL

更新日期：2011-01-01 00:00:00