Systematic Metrics Depicting Cell Death Kinetics.

Abstract:

:In a recent issue of Cell Systems, Forcina et al. (2017) developed a scalable time-lapse analysis of cell death kinetics (STACK) method and combined it with a "lag exponential death" model to quantitatively characterize the onset and rate of cell death. STACK provides a useful quantitative tool to determine how cell death kinetics may be modulated pharmacologically in cell culture systems.

journal_name

Cell Chem Biol

journal_title

Cell chemical biology

authors

Li Y,Yuan J

doi

10.1016/j.chembiol.2017.07.006

subject

Has Abstract

pub_date

2017-07-20 00:00:00

pages

785-786

issue

7

eissn

2451-9456

issn

2451-9448

pii

S2451-9456(17)30239-8

journal_volume

24

pub_type

评论,杂志文章
  • AKAP95 Organizes a Nuclear Microdomain to Control Local cAMP for Regulating Nuclear PKA.

    abstract::Contrary to the classic model of protein kinase A (PKA) residing outside of the nucleus, we identify a nuclear signaling complex that consists of AKAP95, PKA, and PDE4D5 and show that it forms a functional cyclic AMP (cAMP) signaling microdomain. Locally generated cAMP can accumulate within the vicinity of this comple...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2019.03.003

    authors: Clister T,Greenwald EC,Baillie GS,Zhang J

    更新日期:2019-06-20 00:00:00

  • Prevention of Serpin Misfolding by RNA Aptamers.

    abstract::Owing to their structural flexibility, most serpins inhibit the cognate proteases in a fast and specific manner and also are susceptible to pathogenic misfolding. In this issue of Cell Chemical Biology, Madsen et al. (2016) report on the selection and characterization of an RNA aptamer that stabilizes α1-antichymotryp...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2016.06.002

    authors: Zhou X,Declerck PJ

    更新日期:2016-06-23 00:00:00

  • Robust Prediction of Resistance to Trimethoprim in Staphylococcus aureus.

    abstract::The rise of antibiotic resistance threatens modern medicine; to combat it new diagnostic methods are required. Sequencing the whole genome of a pathogen offers the potential to accurately determine which antibiotics will be effective to treat a patient. A key limitation of this approach is that it cannot classify rare...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.12.009

    authors: Fowler PW,Cole K,Gordon NC,Kearns AM,Llewelyn MJ,Peto TEA,Crook DW,Walker AS

    更新日期:2018-03-15 00:00:00

  • A Robust, GFP-Orthogonal Photoswitchable Inhibitor Scaffold Extends Optical Control over the Microtubule Cytoskeleton.

    abstract::Optically controlled chemical reagents, termed "photopharmaceuticals," are powerful tools for precise spatiotemporal control of proteins particularly when genetic methods, such as knockouts or optogenetics are not viable options. However, current photopharmaceutical scaffolds, such as azobenzenes are intolerant of GFP...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2020.11.007

    authors: Gao L,Meiring JCM,Kraus Y,Wranik M,Weinert T,Pritzl SD,Bingham R,Ntouliou E,Jansen KI,Olieric N,Standfuss J,Kapitein LC,Lohmüller T,Ahlfeld J,Akhmanova A,Steinmetz MO,Thorn-Seshold O

    更新日期:2020-11-27 00:00:00

  • No Bones About It: Small Molecules for Bone Regeneration.

    abstract::In this issue of Cell Chemical Biology, Cook et al. (2019) report a new small-molecule activator that enhances osteogenesis and skeletal regeneration in developmental and adult animal models, respectively. This discovery has therapeutic potential for healing following traumatic bone injury, as well as bone remodeling ...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.06.007

    authors: Chang JW,Moellering RE

    更新日期:2019-07-18 00:00:00

  • Chemical Inhibition of Pre-mRNA Splicing in Living Saccharomyces cerevisiae.

    abstract::The spliceosome mediates precursor mRNA splicing in eukaryotes, including the model organism Saccharomyces cerevisiae (yeast). Despite decades of study, no chemical inhibitors of yeast splicing in vivo are available. We have developed a system to efficiently inhibit splicing and block proliferation in living yeast cel...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.11.008

    authors: Hansen SR,Nikolai BJ,Spreacker PJ,Carrocci TJ,Hoskins AA

    更新日期:2019-03-21 00:00:00

  • Monstrous Mycobacterial Lipids.

    abstract::When it comes to lipid diversity, no bacterial genus approaches Mycobacterium. In this issue of Cell Chemical Biology, Burbaud et al. (2016) provide a multi-genic working model for the biosynthesis of trehalose polyphleate (TPP), one of the largest known lipids in mycobacteria. They demonstrate that this lipid is made...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2016.02.004

    authors: Seeliger J,Moody DB

    更新日期:2016-02-18 00:00:00

  • A Systems Chemoproteomic Analysis of Acyl-CoA/Protein Interaction Networks.

    abstract::Acyl-coenzyme A (CoA)/protein interactions are essential for life. Despite this importance, their global scope and selectivity remains undefined. Here, we describe CATNIP (CoA/AcetylTraNsferase Interaction Profiling), a chemoproteomic platform for the high-throughput analysis of acyl-CoA/protein interactions in endoge...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2019.11.011

    authors: Levy MJ,Montgomery DC,Sardiu ME,Montano JL,Bergholtz SE,Nance KD,Thorpe AL,Fox SD,Lin Q,Andresson T,Florens L,Washburn MP,Meier JL

    更新日期:2020-03-19 00:00:00

  • A MALDI-TOF Approach to Ubiquitin Ligase Activity.

    abstract::In this issue of Cell Chemical Biology,De Cesare et al. (2018) report the development of a high-throughput assay that measures E2/E3 enzyme activity by MALDI-TOF mass spectrometry and apply this to screen for small molecule E3 inhibitors. This assay potentially accelerates the drug discovery for the ubiquitin ligation...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2018.09.002

    authors: van Tol BDM,Geurink PP,Ovaa H

    更新日期:2018-09-20 00:00:00

  • Principles of Chemical Biology: Iron and CSCs, Histone Acylation sans Enzymes, Eliciting Silent Gene Clusters, and 2'-deoxy-ADPR as a Second Messenger.

    abstract::This month: Lysosomal iron linked to cell death in cancer stem cells, non-enzymatic catalyst SynCAc for histone acylation, cytotoxins ivermectin and etoposide bring new anti-fungals out of the crypt, and 2'-deoxy-ADPR as second messenger activating TRPM2. ...

    journal_title:Cell chemical biology

    pub_type:

    doi:10.1016/j.chembiol.2017.07.016

    authors:

    更新日期:2017-08-17 00:00:00

  • Dawn of a New Era of Targeted Antioxidant Therapies.

    abstract::In this issue of Cell Chemical Biology, Shah et al. (2019) report an in vitro, high-throughput assay that predicts the ability of compounds to suppress peroxidation of phospholipids. This approach provides a way to design and optimize targeted antioxidants that suppress specific oxidative event in cells, potentially o...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.11.003

    authors: Stockwell BR

    更新日期:2019-11-21 00:00:00

  • Heme Binding Biguanides Target Cytochrome P450-Dependent Cancer Cell Mitochondria.

    abstract::The mechanisms by which cancer cell-intrinsic CYP monooxygenases promote tumor progression are largely unknown. CYP3A4 was unexpectedly associated with breast cancer mitochondria and synthesized arachidonic acid (AA)-derived epoxyeicosatrienoic acids (EETs), which promoted the electron transport chain/respiration and ...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.08.009

    authors: Guo Z,Sevrioukova IF,Denisov IG,Zhang X,Chiu TL,Thomas DG,Hanse EA,Cuellar RAD,Grinkova YV,Langenfeld VW,Swedien DS,Stamschror JD,Alvarez J,Luna F,Galván A,Bae YK,Wulfkuhle JD,Gallagher RI,Petricoin EF Rd,Norris B,

    更新日期:2017-10-19 00:00:00

  • BLISS: A Bioorthogonal Dual-Labeling Strategy to Unravel Lignification Dynamics in Plants.

    abstract::A better in vivo understanding of lignin formation within plant cell walls will contribute to improving the valorization of plant-derived biomass. Although bioorthogonal chemistry provides a promising platform to study the lignification process, methodologies that simultaneously detect multiple chemical reporters in l...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.02.009

    authors: Lion C,Simon C,Huss B,Blervacq AS,Tirot L,Toybou D,Spriet C,Slomianny C,Guerardel Y,Hawkins S,Biot C

    更新日期:2017-03-16 00:00:00

  • Small-Molecule Kinase Downregulators.

    abstract::New opportunities to advance small-molecule kinase ligands that downregulate their cognate target binding proteins are discussed. Rationally designed heterobifunctional kinase degraders are compared with ATP site ligands that were serendipitously found to cause kinase downregulation. These approaches could be particul...

    journal_title:Cell chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.chembiol.2017.10.011

    authors: Jones LH

    更新日期:2018-01-18 00:00:00

  • The High Genetic Barrier of EFdA/MK-8591 Stems from Strong Interactions with the Active Site of Drug-Resistant HIV-1 Reverse Transcriptase.

    abstract::4'-Ethynyl-2-fluoro-2'-deoxyadenosine (EFdA/MK-8591), a nucleoside reverse transcriptase inhibitor (NRTI) under clinical trials, is a potent and promising long-acting anti-HIV type 1 (HIV-1) agent. EFdA and its derivatives possess a modified 4'-moiety and potently inhibit the replication of a wide spectrum of HIV-1 st...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.07.014

    authors: Takamatsu Y,Das D,Kohgo S,Hayashi H,Delino NS,Sarafianos SG,Mitsuya H,Maeda K

    更新日期:2018-10-18 00:00:00

  • Catching Sirtuin-2 Intermediates One Structure at the Time.

    abstract::Sirtuins are a large enzyme family involved in installing and removing post-translational modifications involving lysine side chains. These enzymes have been of intense research interest and we now understand many details of their mechanism, although later steps of the deacetylase activity have remained a mystery. In ...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2017.03.004

    authors: Lee S,Chen Z,Zhang G

    更新日期:2017-03-16 00:00:00

  • Privileged Electrophile Sensors: A Resource for Covalent Drug Development.

    abstract::This Perspective delineates how redox signaling affects the activity of specific enzyme isoforms and how this property may be harnessed for rational drug design. Covalent drugs have resurged in recent years and several reports have extolled the general virtues of developing irreversible inhibitors. Indeed, many modern...

    journal_title:Cell chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.chembiol.2017.05.023

    authors: Long MJC,Aye Y

    更新日期:2017-07-20 00:00:00

  • Small-Molecule Targets in Immuno-Oncology.

    abstract::Advances in understanding the role and molecular mechanisms underlying immune surveillance and control of (pre)malignancies is revolutionizing clinical practice in the treatment of cancer. Presently, multiple biologic drugs targeting the immune checkpoint proteins PD(L)1 or CTLA4 have been approved and/or are in advan...

    journal_title:Cell chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.chembiol.2017.08.019

    authors: Dhanak D,Edwards JP,Nguyen A,Tummino PJ

    更新日期:2017-09-21 00:00:00

  • Lipase Processing of Complex Lipid Antigens.

    abstract::Mycobacterium tuberculosis synthesizes a wide variety of complex lipids that can serve as antigens in immune recognition of the bacterium. In this issue of Cell Chemical Biology, Gilleron et al. (2016) identify key enzymes essential for lipid antigen processing, which is required for CD1b-restricted T cell activation....

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2016.09.005

    authors: Sander P,Becker K,Molin MD

    更新日期:2016-09-22 00:00:00

  • Epiblastin A Induces Reprogramming of Epiblast Stem Cells Into Embryonic Stem Cells by Inhibition of Casein Kinase 1.

    abstract::The discovery of novel small molecules that induce stem cell reprogramming and give efficient access to pluripotent stem cells is of major importance for potential therapeutic applications and may reveal novel insights into the factors controlling pluripotency. Chemical reprogramming of mouse epiblast stem cells (EpiS...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.02.015

    authors: Ursu A,Illich DJ,Takemoto Y,Porfetye AT,Zhang M,Brockmeyer A,Janning P,Watanabe N,Osada H,Vetter IR,Ziegler S,Schöler HR,Waldmann H

    更新日期:2016-04-21 00:00:00

  • Global Cysteine-Reactivity Profiling during Impaired Insulin/IGF-1 Signaling in C. elegans Identifies Uncharacterized Mediators of Longevity.

    abstract::In the nematode Caenorhabditis elegans, inactivating mutations in the insulin/IGF-1 receptor, DAF-2, result in a 2-fold increase in lifespan mediated by DAF-16, a FOXO-family transcription factor. Downstream protein activities that directly regulate longevity during impaired insulin/IGF-1 signaling (IIS) are poorly ch...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.06.015

    authors: Martell J,Seo Y,Bak DW,Kingsley SF,Tissenbaum HA,Weerapana E

    更新日期:2016-08-18 00:00:00

  • Probing Substrate Preferences of Depalmitoylases.

    abstract::Depalmitoylases play a crucial role in regulating dynamic protein palmitoylation. In this issue of Cell Chemical Biology, Amara et al. (2019) present fluorogenic peptide probes to analyze the activity and substrate specificity of depalmitoylases and uncover that the amino acid residues distal to the palmitoylation sit...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2018.12.008

    authors: Chen B,Wu X

    更新日期:2019-01-17 00:00:00

  • Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.

    abstract::KRAS is frequently mutated in several of the most lethal types of cancer; however, the KRAS protein has proven a challenging drug target. K-RAS4B must be localized to the plasma membrane by prenylation to activate oncogenic signaling, thus we endeavored to target the protein-membrane interface with small-molecule comp...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.07.009

    authors: Fang Z,Marshall CB,Nishikawa T,Gossert AD,Jansen JM,Jahnke W,Ikura M

    更新日期:2018-11-15 00:00:00

  • MRSA Isolates from United States Hospitals Carry dfrG and dfrK Resistance Genes and Succumb to Propargyl-Linked Antifolates.

    abstract::Antibiotic resistance is a rapidly evolving health concern that requires a sustained effort to understand mechanisms of resistance and to develop new agents that overcome those mechanisms. The dihydrofolate reductase (DHFR) inhibitor, trimethoprim (TMP), remains one of the most important orally administered antibiotic...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.11.007

    authors: Reeve SM,Scocchera EW,G-Dayanadan N,Keshipeddy S,Krucinska J,Hajian B,Ferreira J,Nailor M,Aeschlimann J,Wright DL,Anderson AC

    更新日期:2016-12-22 00:00:00

  • Pathogen Interference: Targeting Virulence Factors to Tackle Intracellular Microbes.

    abstract::Infections with Salmonella enterica pose a challenge for antibiotic treatment. In this issue of Cell Chemical Biology, Tsai et al. use a chemical genomics approach to identify dephostatin as an inhibitor of intracellular Salmonella virulence in vitro and in vivo by targeting the two-component systems SsrA-SsrB and Pmr...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2020.06.017

    authors: Lee MH,Nuccio SP,Raffatellu M

    更新日期:2020-07-16 00:00:00

  • Lithocholic Acid Hydroxyamide Destabilizes Cyclin D1 and Induces G0/G1 Arrest by Inhibiting Deubiquitinase USP2a.

    abstract::USP2a is a deubiquitinase responsible for stabilization of cyclin D1, a crucial regulator of cell-cycle progression and a proto-oncoprotein overexpressed in numerous cancer types. Here we report that lithocholic acid (LCA) derivatives are inhibitors of USP proteins, including USP2a. The most potent LCA derivative, LCA...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2017.03.002

    authors: Magiera K,Tomala M,Kubica K,De Cesare V,Trost M,Zieba BJ,Kachamakova-Trojanowska N,Les M,Dubin G,Holak TA,Skalniak L

    更新日期:2017-04-20 00:00:00

  • Rox, a Rifamycin Resistance Enzyme with an Unprecedented Mechanism of Action.

    abstract::Rifamycin monooxygenases (Rox) are present in a variety of environmental bacteria and are associated with decomposition of the clinically utilized antibiotic rifampin. Here we report the structure and function of a drug-inducible rox gene from Streptomyces venezuelae, which encodes a class A flavoprotein monooxygenase...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2018.01.009

    authors: Koteva K,Cox G,Kelso JK,Surette MD,Zubyk HL,Ejim L,Stogios P,Savchenko A,Sørensen D,Wright GD

    更新日期:2018-04-19 00:00:00

  • Membrane-Active Rhamnolipids Overcome Aminoglycoside Resistance.

    abstract::In this issue of Cell Chemical Biology, Radlinski et al. (2019) identify Pseudomonas-derived rhamnolipids that potentiate aminoglycoside antibiotics in the eradication of antibiotic-tolerant bacterial phenotypes. Microbial physiological and mechanistic studies indicate that rhamnolipids permeabilize S. aureus membrane...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.09.015

    authors: Yarlagadda V,Wright GD

    更新日期:2019-10-17 00:00:00

  • Molecular Basis for Redox Activation of Epidermal Growth Factor Receptor Kinase.

    abstract::Epidermal growth factor receptor (EGFR) is a target of signal-derived H2O2, and oxidation of active-site cysteine 797 to sulfenic acid enhances kinase activity. Although a major class of covalent drugs targets C797, nothing is known about its catalytic importance or how S-sulfenylation leads to activation. Here, we re...

    journal_title:Cell chemical biology

    pub_type: 杂志文章

    doi:10.1016/j.chembiol.2016.05.017

    authors: Truong TH,Ung PM,Palde PB,Paulsen CE,Schlessinger A,Carroll KS

    更新日期:2016-07-21 00:00:00

  • Precision Retargeting: A Selective Covalent Inhibitor Illuminates CDK7 Biology.

    abstract::In this issue of Cell Chemical Biology, Olson et al. (2019) develop the first selective CDK7 irreversible inhibitor. Elegant cell-based studies using a CDK7 mutant that is not covalently engaged by the probe helped decipher the effects of inhibiting the kinase on the cell cycle and gene transcription. ...

    journal_title:Cell chemical biology

    pub_type: 评论,杂志文章

    doi:10.1016/j.chembiol.2019.05.012

    authors: Jones LH

    更新日期:2019-06-20 00:00:00