Abstract:
BACKGROUND:Genetically encoded calcium ion (Ca2+) indicators (GECIs) are indispensable tools for measuring Ca2+ dynamics and neuronal activities in vitro and in vivo. Red fluorescent protein (RFP)-based GECIs have inherent advantages relative to green fluorescent protein-based GECIs due to the longer wavelength light used for excitation. Longer wavelength light is associated with decreased phototoxicity and deeper penetration through tissue. Red GECI can also enable multicolor visualization with blue- or cyan-excitable fluorophores. RESULTS:Here we report the development, structure, and validation of a new RFP-based GECI, K-GECO1, based on a circularly permutated RFP derived from the sea anemone Entacmaea quadricolor. We have characterized the performance of K-GECO1 in cultured HeLa cells, dissociated neurons, stem-cell-derived cardiomyocytes, organotypic brain slices, zebrafish spinal cord in vivo, and mouse brain in vivo. CONCLUSION:K-GECO1 is the archetype of a new lineage of GECIs based on the RFP eqFP578 scaffold. It offers high sensitivity and fast kinetics, similar or better than those of current state-of-the-art indicators, with diminished lysosomal accumulation and minimal blue-light photoactivation. Further refinements of the K-GECO1 lineage could lead to further improved variants with overall performance that exceeds that of the most highly optimized red GECIs.
journal_name
BMC Bioljournal_title
BMC biologyauthors
Shen Y,Dana H,Abdelfattah AS,Patel R,Shea J,Molina RS,Rawal B,Rancic V,Chang YF,Wu L,Chen Y,Qian Y,Wiens MD,Hambleton N,Ballanyi K,Hughes TE,Drobizhev M,Kim DS,Koyama M,Schreiter ER,Campbell REdoi
10.1186/s12915-018-0480-0subject
Has Abstractpub_date
2018-01-16 00:00:00pages
9issue
1issn
1741-7007pii
10.1186/s12915-018-0480-0journal_volume
16pub_type
杂志文章相关文献
BMC BIOLOGY文献大全abstract::The vertebrate nervous system is deeply divided into 'somatic' and 'visceral' subsystems that respond to external and internal stimuli, respectively. Molecular characterization of neurons in different groups of mollusks by Nomaksteinsky and colleagues, published in this issue of BMC Biology, reveals that the viscero-s...
journal_title:BMC biology
pub_type: 评论,杂志文章
doi:10.1186/1741-7007-11-54
更新日期:2013-04-30 00:00:00
abstract:BACKGROUND:A dearth of laboratory tests to study actual human approach-avoidance behavior has complicated translational research on anxiety. The elevated plus-maze (EPM) is the gold standard to assess approach-avoidance behavior in rodents. METHODS:Here, we translated the EPM to humans using mixed reality through a co...
journal_title:BMC biology
pub_type: 杂志文章,随机对照试验
doi:10.1186/s12915-017-0463-6
更新日期:2017-12-21 00:00:00
abstract:BACKGROUND:Many Caenorhabditis elegans mutations increase longevity and much evidence suggests that they do so at least partly via changes in metabolism. However, up until now there has been no systematic investigation of how the metabolic networks of long-lived mutants differ from those of normal worms. Metabolomic te...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-8-14
更新日期:2010-02-10 00:00:00
abstract:BACKGROUND:Thiazolidinediones are antidiabetic agents that increase insulin sensitivity but reduce glucose oxidation, state 3 respiration, and activity of complex I of the mitochondrial respiratory chain (MRC). The mechanisms of the latter effects are unclear. The aim of this study was to determine the mechanisms by wh...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-11-88
更新日期:2013-08-01 00:00:00
abstract:BACKGROUND:TPA Induced Sequence 7 acts as a transcriptional co-regulator controlling the expression of genes involved in differentiation of various cell types, including skeletal myoblasts. We and others have shown that TIS7 regulates adult myogenesis through MyoD, one of the essential myogenic regulatory factors. RES...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-016-0318-6
更新日期:2016-10-25 00:00:00
abstract:BACKGROUND:Gene drives based on CRISPR-Cas9 technology are increasingly being considered as tools for reducing the capacity of mosquito populations to transmit malaria, and one of the most promising options is driving endonuclease genes that reduce the fertility of female mosquitoes. In particular, there is much intere...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-020-00834-z
更新日期:2020-08-11 00:00:00
abstract:BACKGROUND:In HIV-1-infected human monocyte-derived macrophages (MDMs), virus particles assemble primarily on intracellularly sequestered plasma membrane domains termed intracellular plasma membrane-connected compartments (IPMCs). Despite their clear role in virus formation, little is known of the organization, composi...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-11-89
更新日期:2013-08-02 00:00:00
abstract:BACKGROUND:Vertebrates are characterized by possession of hypobranchial muscles (HBMs). Cyclostomes, or modern jawless vertebrates, possess a rudimentary and superficial HBM lateral to the pharynx, whereas the HBM in jawed vertebrates is internalized and anteroposteriorly specified. Precursor cells of the HBM, marked b...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-020-00851-y
更新日期:2020-09-09 00:00:00
abstract:BACKGROUND:Functional characterisation of the compact genome of the model organism Caenorhabditis elegans remains incomplete despite its sequencing 20 years ago. The last decade of research has seen a tremendous increase in the number of non-coding RNAs identified in various organisms. While we have mechanistic underst...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-019-0635-7
更新日期:2019-02-18 00:00:00
abstract:BACKGROUND:Microarray analysis and 454 cDNA sequencing were used to investigate a centuries-old problem in regenerative biology: the basis of nerve-dependent limb regeneration in salamanders. Innervated (NR) and denervated (DL) forelimbs of Mexican axolotls were amputated and transcripts were sampled after 0, 5, and 14...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-7-1
更新日期:2009-01-13 00:00:00
abstract:BACKGROUND:Recent advances in genome editing have facilitated the direct manipulation of not only the genome, but also the epigenome. Genome editing is typically performed by introducing a single CRISPR/Cas9-mediated double-strand break (DSB), followed by non-homologous end joining (NHEJ)- or homology-directed repair-m...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-019-0711-z
更新日期:2019-11-18 00:00:00
abstract:BACKGROUND:Although native to North America, the invasion of the aphid-like grape phylloxera Daktulosphaira vitifoliae across the globe altered the course of grape cultivation. For the past 150 years, viticulture relied on grafting-resistant North American Vitis species as rootstocks, thereby limiting genetic stocks to...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-020-00820-5
更新日期:2020-07-23 00:00:00
abstract::The authors of this paper were interested to see whether the expression of three proteins (A, B and C) was altered in a knockout mouse model of a gene encoding Protein X. Each experiment measured the expression of a different protein and the results seem to show a clear increase in protein expression in the mutant mou...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-016-0254-5
更新日期:2016-04-07 00:00:00
abstract:BACKGROUND:O-fucosyltransferase1 (OFUT1) is a conserved ER protein essential for Notch signaling. OFUT1 glycosylates EGF domains, which can then be further modified by the N-acetylglucosaminyltransferase Fringe. OFUT1 also possesses a chaperone activity that promotes the folding and secretion of Notch. Here, we investi...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-6-1
更新日期:2008-01-14 00:00:00
abstract:BACKGROUND:Eukaryotic genome assembly remains a challenge in part due to the prevalence of complex DNA repeats. This is a particularly acute problem for holocentric nematodes because of the large number of satellite DNA sequences found throughout their genomes. These have been recalcitrant to most genome sequencing met...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-017-0473-4
更新日期:2018-01-11 00:00:00
abstract:BACKGROUND:Astrocytes can mediate neurovascular coupling, modulate neuronal excitability, and promote synaptic maturation and remodeling. All these functions are likely to be modulated by the sleep/wake cycle, because brain metabolism, neuronal activity and synaptic turnover change as a function of behavioral state. Ye...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-015-0176-7
更新日期:2015-08-25 00:00:00
abstract:BACKGROUND:Wolbachia are obligate endosymbiotic bacteria maternally transmitted through the egg cytoplasm that are responsible for several reproductive disorders in their insect hosts, such as cytoplasmic incompatibility (CI) in infected mosquitoes. Species in the Culex pipiens complex display an unusually high number ...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-5-39
更新日期:2007-09-20 00:00:00
abstract::The evolution of plastids from cyanobacteria is believed to represent a singularity in the history of life. The enigmatic amoeba Paulinella and its 'recently' acquired photosynthetic inclusions provide a fascinating system through which to gain fresh insight into how endosymbionts become organelles.The plastids, or ch...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-10-35
更新日期:2012-04-24 00:00:00
abstract::In the ubiquitin-proteasome system, a subset of ubiquitylated proteins requires the AAA+ ATPase p97 (also known as VCP or Cdc48) for extraction from membranes or protein complexes before delivery to the proteasome for degradation. Diverse ubiquitin adapters are known to link p97 to its client proteins, but two recent ...
journal_title:BMC biology
pub_type: 社论
doi:10.1186/1741-7007-10-48
更新日期:2012-06-13 00:00:00
abstract:BACKGROUND:Parkinson's disease (PD)-associated E3 ubiquitin ligase Parkin is enriched at glutamatergic synapses, where it ubiquitinates multiple substrates, suggesting that its mutation/loss-of-function could contribute to the etiology of PD by disrupting excitatory neurotransmission. Here, we evaluate the impact of fo...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-018-0567-7
更新日期:2018-09-10 00:00:00
abstract:BACKGROUND:Management of blood cholesterol is a major focus of efforts to prevent cardiovascular diseases. The objective of this study was to investigate how the gut microbiota affects host cholesterol homeostasis at the organism scale. RESULTS:We depleted the intestinal microbiota of hypercholesterolemic female Apoe-...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-019-0715-8
更新日期:2019-11-27 00:00:00
abstract:BACKGROUND:Effective disease management depends on timely and accurate diagnosis to guide control measures. The capacity to distinguish between individuals in a pathogen population with specific properties such as fungicide resistance, toxin production and virulence profiles is often essential to inform disease managem...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-019-0684-y
更新日期:2019-08-13 00:00:00
abstract:BACKGROUND:Marine molluscs, as is the case with most aquatic animals, rely heavily on olfactory cues for survival. In the mollusc Aplysia californica, mate-attraction is mediated by a blend of water-borne protein pheromones that are detected by sensory structures called rhinophores. The expression of G protein and phos...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-7-28
更新日期:2009-06-04 00:00:00
abstract:BACKGROUND:Kinases mTORC1 and AMPK act as energy sensors, controlling nutrient responses and cellular growth. Changes in nutrient levels affect diverse transcriptional networks, making it challenging to identify downstream paths that regulate cellular growth or a switch to development via nutrient variation. The life c...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-019-0673-1
更新日期:2019-07-18 00:00:00
abstract:BACKGROUND:Base editors are a class of genome editing tools with the ability to efficiently induce point mutations in genomic DNA, without inducing double-strand breaks or relying on homology-direct repair as in other such technologies. Recently, adenine base editors (ABEs) have been developed to mediate the conversion...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-018-0609-1
更新日期:2018-11-20 00:00:00
abstract::Rino Rappuoli is a graduate of Siena University, where he also earned his PhD before moving to the Sclavo Research Center, the Italian vaccine institute, also in Siena. He then spent two years in the USA, mostly at Harvard with John Murphy and Alwin Pappenheimer working on a new diphtheria vaccine based on a non-toxic...
journal_title:BMC biology
pub_type: 面试
doi:10.1186/s12915-014-0100-6
更新日期:2014-11-29 00:00:00
abstract::The mitogen-activated protein kinase p38 (p38 MAPK) is activated by a number of stresses. A recent study in BMC Genomics has uncovered the early transcriptional responses to three types of stress and has demonstrated a central role for p38 MAPK in mediating these responses. See research article http://www.biomedcentra...
journal_title:BMC biology
pub_type: 评论,社论
doi:10.1186/1741-7007-8-47
更新日期:2010-04-27 00:00:00
abstract:BACKGROUND:The western flower thrips, Frankliniella occidentalis (Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber, and ornamental crops. The underlying genetic mechanisms of the processes governing thrips pest and vector biology, feeding behaviors, ecology, and insecticide r...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-020-00862-9
更新日期:2020-10-19 00:00:00
abstract:BACKGROUND:Invariant natural killer T (iNKT) cells differ from other T cells by their hyperactive effector T-cell status, in addition to the expression of NK lineage receptors and semi-invariant T-cell receptors. It is generally agreed that the immune phenotype of iNKT cells is maintained by repeated activation in peri...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/1741-7007-8-142
更新日期:2010-11-30 00:00:00
abstract:BACKGROUND:The persistence of malaria in large parts of sub-Saharan Africa has motivated the development of novel tools to complement existing control programmes, including gene-drive technologies to modify mosquito vector populations. Here, we use a stochastic simulation model to explore the potential of using a drivi...
journal_title:BMC biology
pub_type: 杂志文章
doi:10.1186/s12915-019-0645-5
更新日期:2019-03-29 00:00:00