Analysis of Transcription Factor-Related Regulatory Networks Based on Bioinformatics Analysis and Validation in Hepatocellular Carcinoma.

Abstract:

:Hepatocellular carcinoma (HCC) accounts for a significant proportion of liver cancer, which has become the second most common cause of cancer-related mortality worldwide. To investigate the potential mechanisms of invasion and progression of HCC, bioinformatics analysis and validation by qRT-PCR were performed. We found 237 differentially expressed genes (DEGs) including EGR1, FOS, and FOSB, which were three cancer-related transcription factors. Subsequently, we constructed TF-gene network and miRNA-TF-mRNA network based on data obtained from mRNA and miRNA expression profiles for analysis of HCC. We found that 42 key genes from the TF-gene network including EGR1, FOS, and FOSB were most enriched in the p53 signaling pathway. The qRT-PCR data confirmed that mRNA levels of EGR1, FOS, and FOSB all were decreased in HCC tissues. In addition, we confirmed that the mRNA levels of CCNB1, CCNB2, and CHEK1, three key markers of the p53 signaling pathway, were all increased in HCC tissues by bioinformatics analysis and qRT-PCR validation. Therefore, we speculated that miR-181a-5p, which was upregulated in HCC tissues, could regulate FOS and EGR1 to promote the invasion and progression of HCC by p53 signaling pathway. Overall, the study provides support for the possible mechanisms of progression in HCC.

journal_name

Biomed Res Int

authors

Liu S,Yao X,Zhang D,Sheng J,Wen X,Wang Q,Chen G,Li Z,Du Z,Zhang X

doi

10.1155/2018/1431396

subject

Has Abstract

pub_date

2018-08-29 00:00:00

pages

1431396

eissn

2314-6133

issn

2314-6141

journal_volume

2018

pub_type

杂志文章
  • Electroporation with Cisplatin against Metastatic Pancreatic Cancer: In Vitro Study on Human Primary Cell Culture.

    abstract::Despite the rapid progression of cancer pharmacotherapy, the high drug resistance of pancreatic ductal adenocarcinoma (PDA) makes it one of the most lethal malignancies. Therefore, there are high expectations associated with experimental therapies, such as electrochemotherapy (ECT). This technique involves the applica...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/7364539

    authors: Michel O,Kulbacka J,Saczko J,Mączyńska J,Błasiak P,Rossowska J,Rzechonek A

    更新日期:2018-03-19 00:00:00

  • VEGF and bFGF gene polymorphisms in patients with non-Hodgkin's lymphoma.

    abstract::Angiogenesis and lymphangiogenesis are important in the proliferation and survival of the malignant hematopoietic neoplasms, including non-Hodgkin's lymphomas (NHLs). Vascular endothelial growth factor (VEGF) and basic fibroblast growth factor (bFGF) play an important role in the initiation of angiogenesis. Both VEGF ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/159813

    authors: Wróbel T,Mazur G,Dzietczenia J,Gębura K,Kuliczkowski K,Bogunia-Kubik K

    更新日期:2013-01-01 00:00:00

  • Relationship between malnutrition and the number of permanent teeth in Filipino 10- to 13-year-olds.

    abstract::In the present study, we determined whether there is a delay in the eruption of permanent teeth (PT) among Filipino adolescents with stunting or thinness. Height, weight, and number of PT were recorded in 1554 Filipino 10- to 13-year-olds (711 boys; 843 girls). z-scores for height (HAZ) and body mass index (BMI) were ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/205950

    authors: Heinrich-Weltzien R,Zorn C,Monse B,Kromeyer-Hauschild K

    更新日期:2013-01-01 00:00:00

  • Incidence and Predictors of Catheterization-Related Cerebral Infarction on Diffusion-Weighted Magnetic Resonance Imaging.

    abstract::Introduction. The aim of this study was to examine the incidence and risk factors of catheterization-related CI in the contemporary era, using diffusion-weighted magnetic resonance imaging. Methods. We retrospectively analyzed consecutive 84 patients who underwent MRI (magnetic resonance imaging) after 2.81 ± 2.4 days...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/6052125

    authors: Morita Y,Kato T,Okano M,Suu K,Kimura M,Minamino-Muta E,Nakane E,Izumi T,Miyamoto S,Haruna T,Ueyama K,Inoko M

    更新日期:2016-01-01 00:00:00

  • Remote Magnetic versus Manual Navigation for Radiofrequency Ablation of Paroxysmal Atrial Fibrillation: Long-Term, Controlled Data in a Large Cohort.

    abstract::Purpose. We aimed to study long-term outcome after pulmonary vein isolation (PVI) guided by remote magnetic navigation (RMN) and provided comparative data to outcome after manual navigation (MAN). Methods. Three hundred thirty-six patients with symptomatic paroxysmal AF underwent PVI by irrigated point-by-point radiof...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/6323729

    authors: Kataria V,Berte B,Vandekerckhove Y,Tavernier R,Duytschaever M

    更新日期:2017-01-01 00:00:00

  • Serum Human Epididymis Protein 4 is Associated with Renal Function and Diabetic Kidney Disease in Patients with Type 2 Diabetes Mellitus.

    abstract::Human epididymis protein 4 (HE4) is an available tumor biomarker mainly for detecting ovarian cancer. However, it is unknown whether it can be a novel indicator for diagnosis of diabetic kidney disease (DKD). The aim of this study was to investigate the possibility of serum HE4 as a novel biomarker for DKD in patients...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/4831459

    authors: Zhang M,Zhao B,Xie J,Liang Y,Yang Z

    更新日期:2019-11-11 00:00:00

  • Complete Chloroplast Genome Sequence of Justicia flava: Genome Comparative Analysis and Phylogenetic Relationships among Acanthaceae.

    abstract::The complete chloroplast genome of J. flava, an endangered medicinal plant in Saudi Arabia, was sequenced and compared with cp genome of three Acanthaceae species to characterize the cp genome, identify SSRs, and also detect variation among the cp genomes of the sampled Acanthaceae. NOVOPlasty was used to assemble the...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/4370258

    authors: Yaradua SS,Alzahrani DA,Albokhary EJ,Abba A,Bello A

    更新日期:2019-08-06 00:00:00

  • Systematic analysis of the associations between adverse drug reactions and pathways.

    abstract::Adverse drug reactions (ADRs) are responsible for drug candidate failure during clinical trials. It is crucial to investigate biological pathways contributing to ADRs. Here, we applied a large-scale analysis to identify overrepresented ADR-pathway combinations through merging clinical phenotypic data, biological pathw...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2015/670949

    authors: Chen X,Wang Y,Wang P,Lian B,Li C,Wang J,Li X,Jiang W

    更新日期:2015-01-01 00:00:00

  • Erythropoietin Modification Enhances the Protection of Mesenchymal Stem Cells on Diabetic Rat-Derived Schwann Cells: Implications for Diabetic Neuropathy.

    abstract::Diabetes-triggered apoptosis of Schwann cells (SC) contributes to the degradation of diabetic peripheral neuropathy (DNP). In recent years, mesenchymal stem cells (MSC) were applied to DPN repair and it was demonstrated that paracrine secretion played a key role in neuroprotection exerted by MSC. Erythropoietin (EPO) ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/6352858

    authors: Zhang S,Shi B

    更新日期:2017-01-01 00:00:00

  • Late Brain Involvement after Neonatal Immune Activation.

    abstract::The neonatal immune system is still immature, which makes it more susceptible to the infectious agents. Neonatal immune activation is associated with increased permeability of the blood-brain barrier, causing an inflammatory cascade in the CNS and altering behavioral and neurochemical parameters. One of the hypotheses...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/9573248

    authors: Dias P,Freiberger V,Ventura L,Bragagnolo D,Dutra ML,Horewicz VV,Comim CM

    更新日期:2019-08-05 00:00:00

  • Enhanced therapeutic efficacy of iRGD-conjugated crosslinked multilayer liposomes for drug delivery.

    abstract::Targeting nanoparticles by conjugating various specific ligands has shown potential therapeutic efficacy in nanomedicine. However, poor penetration of antitumor drugs into solid tumors remains a major obstacle. Here, we describe a targeting strategy for antitumor drug delivery by conjugating a crosslinked multilamella...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/378380

    authors: Liu Y,Ji M,Wong MK,Joo KI,Wang P

    更新日期:2013-01-01 00:00:00

  • Etiology of End-Stage Renal Disease and Arterial Stiffness among Hemodialysis Patients.

    abstract::Background. Prior studies have demonstrated that conventional and emerging CV risk factors are associated with worsening arterial stiffness among end-stage renal disease (ESRD) patients on hemodialysis. The present cross-sectional study evaluates the association between the etiology of ESRD and arterial stiffness amon...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/2543262

    authors: El Ghoul B,Daaboul Y,Korjian S,El Alam A,Mansour A,Hariri E,Samad S,Salameh P,Dahdah G,Blacher J,Safar ME,Aoun Bahous S

    更新日期:2017-01-01 00:00:00

  • Atypical enteropathogenic Escherichia coli strains form biofilm on abiotic surfaces regardless of their adherence pattern on cultured epithelial cells.

    abstract::The aim of this study was to determine the capacity of biofilm formation of atypical enteropathogenic Escherichia coli (aEPEC) strains on abiotic and biotic surfaces. Ninety-one aEPEC strains, isolated from feces of children with diarrhea, were analyzed by the crystal violet (CV) assay on an abiotic surface after 24 h...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/845147

    authors: Culler HF,Mota CM,Abe CM,Elias WP,Sircili MP,Franzolin MR

    更新日期:2014-01-01 00:00:00

  • Early aging in Chernobyl clean-up workers: long-term study.

    abstract::This paper represents data of long-term open prospective study. 312 male clean-up workers, who participated in elimination of the Chernobyl disaster consequences in 1986-87, were observed and examined in Moscow Research Institute of Psychiatry. The average age of patients was 57,0 ± 6,8 years. All patients were diagno...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/948473

    authors: Krasnov V,Kryukov V,Samedova E,Emelianova I,Ryzhova I

    更新日期:2015-01-01 00:00:00

  • Evaluation of Laser Speckle Contrast Imaging for the Assessment of Oral Mucosal Blood Flow following Periodontal Plastic Surgery: An Exploratory Study.

    abstract::The laser speckle contrast imaging (LSCI) is proved to be a reliable tool in flap monitoring in general surgery; however, it has not been evaluated in oral surgery yet. We applied the LSCI to compare the effect of a xenogeneic collagen matrix (Geistlich Mucograft®) to connective tissue grafts (CTG) on the microcircula...

    journal_title:BioMed research international

    pub_type: 临床试验,杂志文章

    doi:10.1155/2017/4042902

    authors: Molnár E,Molnár B,Lohinai Z,Tóth Z,Benyó Z,Hricisák L,Windisch P,Vág J

    更新日期:2017-01-01 00:00:00

  • Strategies to characterize fungal lipases for applications in medicine and dairy industry.

    abstract::Lipases are water-soluble enzymes that act on insoluble substrates and catalyze the hydrolysis of long-chain triglycerides. Lipases play a vital role in the food, detergent, chemical, and pharmaceutical industries. In the past, fungal lipases gained significant attention in the industries due to their substrate specif...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2013/154549

    authors: Gopinath SC,Anbu P,Lakshmipriya T,Hilda A

    更新日期:2013-01-01 00:00:00

  • Expression Atlas of FGF and FGFR Genes in Pancancer Uncovered Predictive Biomarkers for Clinical Trials of Selective FGFR Inhibitors.

    abstract:Background:Clinical trials based on FGFR mutation or amplification as a druggable target of FGFR inhibitors have produced disappointing clinical outcomes. Therefore, the identification of predictive biomarkers for FGFR-targeted agents has remained a crucial issue. Methods:Expression profiles of FGFs and FGFRs in 8,111...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/5658904

    authors: Li Y,Wu L,Tao W,Wu D,Ma F,Li N

    更新日期:2020-06-03 00:00:00

  • Production and enhancement of omega-3 fatty acid from Mortierella alpina CFR-GV15: its food and therapeutic application.

    abstract::Mortierella sp. has been known to produce polyunsaturated fatty acids (PUFAs) such as GLA and AA under normal growth medium conditions. Similarly, under the stress condition, this fungus produces EPA and DHA in their mycelial biomass. Among the 67 soil samples screened from the Western Ghats of India, 11 Mortierella i...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/657414

    authors: Vadivelan G,Venkateswaran G

    更新日期:2014-01-01 00:00:00

  • Inflammatory Cellular Response to Mechanical Ventilation in Elastase-Induced Experimental Emphysema: Role of Preexisting Alveolar Macrophages Infiltration.

    abstract::An excessive pulmonary inflammatory response could explain the poor prognosis of chronic obstructive pulmonary disease (COPD) patients submitted to invasive mechanical ventilation. The aim of this study was to evaluate the response to normal tidal volume mechanical ventilation in an elastase-induced murine model of pu...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/5721293

    authors: Rouze A,Voiriot G,Guivarch E,Roux F,Tran Van Nhieu J,Isabey D,Brochard L,Maitre B,Mekontso-Dessap A,Boczkowski J

    更新日期:2018-12-19 00:00:00

  • Effects of ACEIs and ARBs on the Residual Renal Function in Peritoneal Dialysis Patients: A Meta-Analysis of Randomized Controlled Trials.

    abstract:Background:In peritoneal dialysis (PD) patients, whether angiotensin-converting enzyme inhibitors (ACEIs) and angiotensin receptor blockers (ARBs) could protect residual renal function is still controversial. To assess the effects of ACEIs and ARBs on the residual renal function and cardiovascular (CV) events in perito...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2020/6762029

    authors: Ding L,Yang J,Li L,Yang Y

    更新日期:2020-09-23 00:00:00

  • Use of a Total Variation Minimization Iterative Reconstruction Algorithm to Evaluate Reduced Projections during Digital Breast Tomosynthesis.

    abstract:Purpose:We evaluated the efficacies of the adaptive steepest descent projection onto convex sets (ASD-POCS), simultaneous algebraic reconstruction technique (SART), filtered back projection (FBP), and maximum likelihood expectation maximization (MLEM) total variation minimization iterative algorithms for reducing expos...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/5239082

    authors: Gomi T,Koibuchi Y

    更新日期:2018-06-19 00:00:00

  • Decision Support Systems in Prostate Cancer Treatment: An Overview.

    abstract:Background:A multifactorial decision support system (mDSS) is a tool designed to improve the clinical decision-making process, while using clinical inputs for an individual patient to generate case-specific advice. The study provides an overview of the literature to analyze current available mDSS focused on prostate ca...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2019/4961768

    authors: van Wijk Y,Halilaj I,van Limbergen E,Walsh S,Lutgens L,Lambin P,Vanneste BGL

    更新日期:2019-06-06 00:00:00

  • Retracted: Leaf Rolling and Stem Fasciation in Grass Pea (Lathyrus sativus L.) Mutant Are Mediated through Glutathione-Dependent Cellular and Metabolic Changes and Associated with a Metabolic Diversion through Cysteine during Phenotypic Reversal.

    abstract::[This retracts the article DOI: 10.1155/2014/479180.]. ...

    journal_title:BioMed research international

    pub_type: 撤回出版物

    doi:10.1155/2016/4938464

    authors: BioMed Research International

    更新日期:2016-01-01 00:00:00

  • Gray Matter Atrophy within the Default Mode Network of Fibromyalgia: A Meta-Analysis of Voxel-Based Morphometry Studies.

    abstract::Over the years, studies have demonstrated morphological changes in the brain of fibromyalgia (FMS). We aimed to conduct a coordinate-based meta-analytic research through systemic review on voxel-based morphometry (VBM) imaging results to identify consistent gray matter (GM) difference between FMS patients and healthy ...

    journal_title:BioMed research international

    pub_type: 杂志文章,meta分析,评审

    doi:10.1155/2016/7296125

    authors: Lin C,Lee SH,Weng HH

    更新日期:2016-01-01 00:00:00

  • Development of a New Hybrid Biodegradable Drug-Eluting Stent for the Treatment of Peripheral Artery Disease.

    abstract::This study aimed to develop a new biodegradable stent for peripheral artery disease (PAD) that could provide sufficient radial force to maintain long-term patency and flexibility. All self-expandable hybrid biodegradable stents were designed by using a knitting structure composed of poly-L-lactic acid (PLLA) and nitin...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/6915789

    authors: Lee JH,Kim SJ,Park SI,Ko YG,Choi D,Hong MK,Jang Y

    更新日期:2016-01-01 00:00:00

  • Expression Profiles of Long Noncoding RNA and mRNA in Epicardial Adipose Tissue in Patients with Heart Failure.

    abstract::The expression profile of long noncoding RNA (lncRNA) in human epicardial adipose tissue (EAT) has not been widely studied. In the present study, we performed RNA sequencing to analyze the expression profiles of lncRNA and mRNA in EAT in coronary artery disease (CAD) patients with and without heart failure (HF). Our r...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/3945475

    authors: Zheng M,Zhao L,Yang X

    更新日期:2019-07-04 00:00:00

  • CT and MRI Findings of Soft Tissue Adult Fibrosarcoma in Extremities.

    abstract:Objective:To characterize and evaluate CT and MRI features of extremity soft tissue adult fibrosarcoma. Methods:CT and MRI images from 10 adult patients with pathologically proven fibrosarcomas were retrospectively analyzed with regard to tumor location, size, number, shape, margins, attenuation, signal intensity, and...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/6075705

    authors: Wang H,Nie P,Dong C,Li J,Huang Y,Hao D,Xu W

    更新日期:2018-03-06 00:00:00

  • DPYD, TYMS, TYMP, TK1, and TK2 genetic expressions as response markers in locally advanced rectal cancer patients treated with fluoropyrimidine-based chemoradiotherapy.

    abstract::This study is to investigate multiple chemotherapeutic agent- and radiation-related genetic biomarkers in locally advanced rectal cancer (LARC) patients following fluoropyrimidine-based concurrent chemoradiotherapy (CCRT) for response prediction. We initially selected 6 fluoropyrimidine metabolism-related genes (DPYD,...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/931028

    authors: Huang MY,Wu CH,Huang CM,Chung FY,Huang CW,Tsai HL,Chen CF,Lin SR,Wang JY

    更新日期:2013-01-01 00:00:00

  • Study of the polycarbonate-urethane/metal contact in different positions during gait cycle.

    abstract::Nowadays, a growing number of young and more active patients receive hip replacement. More strenuous activities in such patients involve higher friction and wear rates, with friction on the bearing surface being crucial to ensure arthroplasty survival in the long term. Over the last years, the polycarbonate-urethane h...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/548968

    authors: Gabarre S,Herrera A,Mateo J,Ibarz E,Lobo-Escolar A,Gracia L

    更新日期:2014-01-01 00:00:00

  • Inguinal Hernias Represent the Most Frequent Surgical Complication after Kasai in Biliary Atresia Infants.

    abstract::Biliary atresia (BA) is an orphan medical condition of the newborn, resulting in end-stage liver cirrhosis due to obliterative cholangiopathy of the extrahepatic bile duct. Although Kasai's hepatoportoenterostomy (KPE) is the well-established first-line therapy, little is known about its surgical complications. 153 pa...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/383791

    authors: Madadi-Sanjani O,Carl N,Longerich T,Petersen C,Andruszkow JH

    更新日期:2015-01-01 00:00:00