Three decades of nucleic acid aptamer technologies: Lessons learned, progress and opportunities on aptamer development.

Abstract:

:Aptamers are short single-stranded nucleic acid sequences capable of binding to target molecules in a way similar to antibodies. Due to various advantages such as prolonged shelf life, low batch to batch variation, low/no immunogenicity, freedom to incorporate chemical modification for enhanced stability and targeting capacity, aptamers quickly found their potential in diverse applications ranging from therapy, drug delivery, diagnosis, and functional genomics to bio-sensing. Aptamers are generated by a process called SELEX. However, the current overall success rate of SELEX is far from being satisfactory, and still presents a major obstacle for aptamer-based research and application. The need for an efficient selection strategy consisting of defined procedures to deal with a wide variety of targets is significantly important. In this work, by analyzing key aspects of SELEX including initial library design, target preparation, PCR optimization, and single strand DNA separation, we provide a comprehensive analysis of individual steps to facilitate researchers intending to develop personalized protocols to address many of the obstacles in SELEX. In addition, this review provides suggestions and opinions for future aptamer development procedures to address the concerns on key SELEX steps, and post-SELEX modifications.

journal_name

Biotechnol Adv

journal_title

Biotechnology advances

authors

Wang T,Chen C,Larcher LM,Barrero RA,Veedu RN

doi

10.1016/j.biotechadv.2018.11.001

subject

Has Abstract

pub_date

2019-01-01 00:00:00

pages

28-50

issue

1

eissn

0734-9750

issn

1873-1899

pii

S0734-9750(18)30177-0

journal_volume

37

pub_type

杂志文章,评审
  • Biosensors: recent trends.

    abstract::One of the major bottlenecks in automation and process control of industrial bioprocesses is the lack of suitable sensing devices to accurately measure the concentrations of biomolecules. The measurement of ions (e.g., H(+), NH(4)(+)) and gases (e.g., O(2), CO(2), NH(3)) using standard ion-selective and gas sensing el...

    journal_title:Biotechnology advances

    pub_type: 杂志文章

    doi:10.1016/0734-9750(85)90292-7

    authors: Graham A,Moo-Young M

    更新日期:1985-01-01 00:00:00

  • Where bio meets nano: the many uses for nanoporous aluminum oxide in biotechnology.

    abstract::Porous aluminum oxide (PAO) is a ceramic formed by an anodization process of pure aluminum that enables the controllable assembly of exceptionally dense and regular nanopores in a planar membrane. As a consequence, PAO has a high porosity, nanopores with high aspect ratio, biocompatibility and the potential for high s...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2011.08.005

    authors: Ingham CJ,ter Maat J,de Vos WM

    更新日期:2012-09-01 00:00:00

  • Genetic modification of critical enzymes and involved genes in butanol biosynthesis from biomass.

    abstract::Interest in biobutanol, a sustainable vehicle fuel, is increasing due to rising oil prices and concerns of surrounding climate change and the energy crisis. However, the costs of biobutanol with conventional ABE fermentation by Clostridium are higher than the cost of butanol from today's petrochemical processes. Two m...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2010.05.015

    authors: Huang H,Liu H,Gan YR

    更新日期:2010-09-01 00:00:00

  • A logical data representation framework for electricity-driven bioproduction processes.

    abstract::Microbial electrosynthesis (MES) is a process that uses electricity as an energy source for driving the production of chemicals and fuels using microorganisms and CO2 or organics as carbon sources. The development of this highly interdisciplinary technology on the interface between biotechnology and electrochemistry r...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2015.03.002

    authors: Patil SA,Gildemyn S,Pant D,Zengler K,Logan BE,Rabaey K

    更新日期:2015-11-01 00:00:00

  • Surface display of antibodies.

    abstract::To screen antibody libraries that contain many millions of different clones, a selection system is required with an efficiency comparable to that of the immune system. This can be achieved by displaying antibodies on the surface of microorganisms containing the antibody's gene, analogous to the expression of the IgM a...

    journal_title:Biotechnology advances

    pub_type: 杂志文章

    doi:10.1016/0734-9750(94)90023-x

    authors: Little M,Breitling F,Micheel B,Dübel S

    更新日期:1994-01-01 00:00:00

  • Bioengineering plant resistance to abiotic stresses by the global calcium signal system.

    abstract::Considerable progresses have taken place both in the methodology available to study changes in intracellular cytosolic calcium and in our understanding of calcium signaling cascades. It is generally accepted that the global calcium signal system functions importantly in coping with plant abiotic stresses, especially d...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2008.04.004

    authors: Hong-Bo S,Li-Ye C,Ming-An S,Shi-Qing L,Ji-Cheng Y

    更新日期:2008-11-01 00:00:00

  • Nanomaterial based electrochemical sensors for in vitro detection of small molecule metabolites.

    abstract::Small molecule metabolites secreted by pathological processes can act as molecular biomarkers for clinical diagnosis. In vitro detection of the metabolites such as glucose and reactive oxygen species is of great significance for precise screening, monitoring and prognosis of metabolic disorders and relevant diseases s...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2016.01.006

    authors: Xiao F,Wang L,Duan H

    更新日期:2016-05-01 00:00:00

  • Cheese whey: A potential resource to transform into bioprotein, functional/nutritional proteins and bioactive peptides.

    abstract::The byproduct of cheese-producing industries, cheese whey, is considered as an environmental pollutant due to its high BOD and COD concentrations. The high organic load of whey arises from the presence of residual milk nutrients. As demand for milk-derived products is increasing, it leads to increased production of wh...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2015.07.002

    authors: Yadav JS,Yan S,Pilli S,Kumar L,Tyagi RD,Surampalli RY

    更新日期:2015-11-01 00:00:00

  • Electrospinning: a fascinating fiber fabrication technique.

    abstract::With the emergence of nanotechnology, researchers become more interested in studying the unique properties of nanoscale materials. Electrospinning, an electrostatic fiber fabrication technique has evinced more interest and attention in recent years due to its versatility and potential for applications in diverse field...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2010.01.004

    authors: Bhardwaj N,Kundu SC

    更新日期:2010-05-01 00:00:00

  • The use of bacterial polysaccharides in bioprinting.

    abstract::Additive manufacturing or 3D printing has spearheaded a revolution in the biomedical sector allowing the rapid prototyping of medical devices. The recent advancements in bioprinting technology are enabling the development of potential new therapeutic options with respect to tissue engineering and regenerative medicine...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2019.107448

    authors: McCarthy RR,Ullah MW,Booth P,Pei E,Yang G

    更新日期:2019-12-01 00:00:00

  • Self-assembly of partially hydrolysed alpha-lactalbumin.

    abstract::Hydrolysis of the whey protein alpha-lactalbumin with a specific serine protease has been shown to result in regular nanotubes of approximately 20 nm in outer diameter and reaching several mum in length. Tubular assembly depends on the concentration of protein as this determines how far the hydrolysis proceeds. A conc...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2007.07.006

    authors: Ipsen R,Otte J

    更新日期:2007-11-01 00:00:00

  • Advances in aerobic granule formation and granule stability in the course of storage and reactor operation.

    abstract::Aerobic granulation is drawing increasing global interest in a quest for an efficient and innovative technology in wastewater treatment. Developed less than two decades ago, extensive research work on aerobic granulation has been reported. The instability of the granule, which is one of the main problems that hinder p...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2010.08.007

    authors: Lee DJ,Chen YY,Show KY,Whiteley CG,Tay JH

    更新日期:2010-11-01 00:00:00

  • Plants as bioreactors for the production of vaccine antigens.

    abstract::Plants have been identified as promising expression systems for commercial production of vaccine antigens. In phase I clinical trials several plant-derived vaccine antigens have been found to be safe and induce sufficiently high immune response. Thus, transgenic plants, including edible plant parts are suggested as ex...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2009.03.006

    authors: Tiwari S,Verma PC,Singh PK,Tuli R

    更新日期:2009-07-01 00:00:00

  • An economic assessment of astaxanthin production by large scale cultivation of Haematococcus pluvialis.

    abstract::Although natural sources have long been exploited for astaxanthin production, it is still uncertain if natural astaxanthin can be produced at lower cost than that of synthetic astaxanthin or not. In order to give a comprehensive cost analysis of astaxanthin production from Haematococcus, a pilot plant with two large s...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2011.04.001

    authors: Li J,Zhu D,Niu J,Shen S,Wang G

    更新日期:2011-11-01 00:00:00

  • Plants as sources of natural and recombinant anti-cancer agents.

    abstract::Herbal remedies were the first medicines used by humans due to the many pharmacologically active secondary metabolites produced by plants. Some of these metabolites inhibit cell division and can therefore be used for the treatment of cancer, e.g. the mitostatic drug paclitaxel (Taxol). The ability of plants to produce...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2018.02.002

    authors: Buyel JF

    更新日期:2018-01-01 00:00:00

  • Enzymes to unravel bioproducts architecture.

    abstract::Enzymes are essential and ubiquitous biocatalysts involved in various metabolic pathways and used in many industrial processes. Here, we reframe enzymes not just as biocatalysts transforming bioproducts but also as sensitive probes for exploring the structure and composition of complex bioproducts, like meat tissue, d...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2020.107546

    authors: Bourlieu C,Astruc T,Barbe S,Berrin JG,Bonnin E,Boutrou R,Hugouvieux V,Le Feunteun S,Paës G

    更新日期:2020-01-01 00:00:00

  • β-Galactosidases: A great tool for synthesizing galactose-containing carbohydrates.

    abstract::β-Galactosidases, an important class of glycosidases, naturally catalyze the hydrolysis of β-galactosidic bonds in oligosaccharides and polysaccharides. Traditionally, these enzymes have been used to degrade lactose in dairy products, which are beneficial for lactose-intolerant people. Attractively, β-galactosidases e...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2019.107465

    authors: Lu L,Guo L,Wang K,Liu Y,Xiao M

    更新日期:2020-01-01 00:00:00

  • Lipase immobilization on ceramic supports: An overview on techniques and materials.

    abstract::Enzyme immobilization is a well-known technique that allows the reuse of the biocatalyst and generally improves its stability. These improved characteristics are of fundamental importance to turn industrial biocatalysis into viable and competitive processes. The immobilization of enzymes can occur through several phys...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2020.107581

    authors: Mulinari J,Oliveira JV,Hotza D

    更新日期:2020-01-01 00:00:00

  • Molecular targets for detection and immunotherapy in Cryptosporidium parvum.

    abstract::Cryptosporidium parvum is an obligate protozoan parasite responsible for the diarrheal illness cryptosporidiosis in humans and animals. Although C. parvum is particularly pathogenic in immunocompromised hosts, the molecular mechanisms by which C. parvum invades the host epithelial cells are not well understood. Charac...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2006.08.003

    authors: Boulter-Bitzer JI,Lee H,Trevors JT

    更新日期:2007-01-01 00:00:00

  • Advances in direct interspecies electron transfer and conductive materials: Electron flux, organic degradation and microbial interaction.

    abstract::Direct interspecies electron transfer (DIET) via electrically conductive pili (e-pili) and c-type cytochrome between acetogens and methanogens has been proposed as an essential pathway for methane production. Supplements of conductive materials have been extensively found to promote methane production in microbial ana...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2019.107443

    authors: Yin Q,Wu G

    更新日期:2019-12-01 00:00:00

  • Linking microalgae and cyanobacteria culture conditions and key-enzymes for carbohydrate accumulation.

    abstract::Microalgae are regarded as a potential biomass source for biofuel purposes. With regard to bioethanol production, microalgae seem to overcome traditional substrate drawbacks. Enzymatic activities are responsible for carbon allocation and hence for carbohydrate profiles. Enzyme activities may be manipulated by metaboli...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2012.07.003

    authors: González-Fernández C,Ballesteros M

    更新日期:2012-11-01 00:00:00

  • Engineering of transcriptional regulators enhances microbial stress tolerance.

    abstract::Both prokaryotes and eukaryotes have pyramid-shaped hierarchical regulatory networks that control gene transcription, enabling the cell to respond to natural environmental changes. In recent years, manipulation and engineering of transcriptional regulatory proteins and networks have been used to elicit microbial toler...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2013.02.010

    authors: Lin Z,Zhang Y,Wang J

    更新日期:2013-11-01 00:00:00

  • The insulin-like androgenic gland hormone in crustaceans: From a single gene silencing to a wide array of sexual manipulation-based biotechnologies.

    abstract::Due to the over-harvesting and deterioration of wild populations, the ever-growing crustacean market is increasingly reliant on aquaculture, driving the need for better management techniques. Since most cultured crustacean species exhibit sexually dimorphic growth patterns, the culture of monosex populations (either a...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2012.04.008

    authors: Ventura T,Sagi A

    更新日期:2012-11-01 00:00:00

  • Immobilized viable microbial cells: from the process to the proteome em leader or the cart before the horse.

    abstract::Biotechnological processes based on immobilized viable cells have developed rapidly over the last 30 years. For a long time, basic studies of the physiological behaviour of immobilized cells (IC) have remained in the shadow of the applications. Natural IC structures, i.e. biofilms, are being increasingly investigated ...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2004.06.003

    authors: Junter GA,Jouenne T

    更新日期:2004-11-01 00:00:00

  • Genome shuffling: Progress and applications for phenotype improvement.

    abstract::Although rational method and global technique have been successfully applied in strain improvement respectively, the demand for engineering complex phenotypes required combinatorial approach. The technology of genome shuffling has been presented as a novel whole genome engineering approach for the rapid improvement of...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2009.05.016

    authors: Gong J,Zheng H,Wu Z,Chen T,Zhao X

    更新日期:2009-11-01 00:00:00

  • Spotlight on biodiversity of microbial cell factories for glycerol conversion.

    abstract::Plant oil based industrial oleochemistry leads to a large side stream of crude glycerol, which offers itself as a low price carbon source for microbial chemical production. Compared to sugar, glycerol is more reduced and less microorganisms are able to use it as carbon source. An interesting feature of glycerol conver...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2019.05.001

    authors: Russmayer H,Egermeier M,Kalemasi D,Sauer M

    更新日期:2019-11-01 00:00:00

  • Challenges and solutions for biofiltration of hydrophobic volatile organic compounds.

    abstract::Volatile organic compounds (VOCs) emitted to the environment highly probably result in ecological and health risks. Many biotechnologies for waste gases containing hydrophobic VOCs have been developed in recent years. However, these biological processes usually exhibit poor removal performances for hydrophobic VOCs du...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2016.06.007

    authors: Cheng Y,He H,Yang C,Zeng G,Li X,Chen H,Yu G

    更新日期:2016-11-01 00:00:00

  • Advances in genetic modification of pluripotent stem cells.

    abstract::Genetically engineered stem cells aid in dissecting basic cell function and are valuable tools for drug discovery, in vivo cell tracking, and gene therapy. Gene transfer into pluripotent stem cells has been a challenge due to their intrinsic feature of growing in clusters and hence not amenable to common gene delivery...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2013.07.003

    authors: Fontes A,Lakshmipathy U

    更新日期:2013-11-15 00:00:00

  • Bioactives from microalgal dinoflagellates.

    abstract::Dinoflagellate microalgae are an important source of marine biotoxins. Bioactives from dinoflagellates are attracting increasing attention because of their impact on the safety of seafood and potential uses in biomedical, toxicological and pharmacological research. Here we review the potential applications of dinoflag...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2012.07.005

    authors: Gallardo-Rodríguez J,Sánchez-Mirón A,García-Camacho F,López-Rosales L,Chisti Y,Molina-Grima E

    更新日期:2012-11-01 00:00:00

  • Ramanome technology platform for label-free screening and sorting of microbial cell factories at single-cell resolution.

    abstract::Phenotypic profiling of natural, engineered or synthetic cells has increasingly become a bottleneck in the mining and engineering of cell factories. Single-cell phenotyping technologies are highly promising for tackling this hurdle, yet ideally they should allow non-invasive live-cell probing, be label-free, provide l...

    journal_title:Biotechnology advances

    pub_type: 杂志文章,评审

    doi:10.1016/j.biotechadv.2019.04.010

    authors: He Y,Wang X,Ma B,Xu J

    更新日期:2019-11-01 00:00:00