Mutation and Selection in Bacteria: Modelling and Calibration.

abstract：:In this paper, we use multiple scale homogenisation to derive a set of averaged macroscale equations that describe the movement of nutrients in partially saturated soil that contains growing potato tubers. The soil is modelled as a poroelastic material, which is deformed by the growth of the tubers, where the growth o...

journal_title：Bulletin of mathematical biology

authors： Duncan SJ,Daly KR,McKay Fletcher DM,Ruiz S,Sweeney P,Roose T

更新日期：2019-10-01 00:00:00

abstract：:One of the main challenges in systems biology is the establishment of the metabolome: a catalogue of the metabolites and biochemical reactions present in a specific organism. Current knowledge of biochemical pathways as stored in public databases such as KEGG, is based on carefully curated genomic evidence for the pre...

journal_title：Bulletin of mathematical biology

authors： Félix L,Rosselló F,Valiente G

更新日期：2009-04-01 00:00:00

abstract：:The insertion-deletion model developed by Thorne, Kishino and Felsenstein (1991, J. Mol. Evol., 33, 114-124; the TKF91 model) provides a statistical framework of two sequences. The statistical alignment of a set of sequences related by a star tree is a generalization of this model. The known algorithm computes the pro...

journal_title：Bulletin of mathematical biology

authors： Miklós I

更新日期：2002-07-01 00:00:00

abstract：:In this paper we use the Gray code representation of the genetic code C=00, U=10, G=11 and A=01 (C pairs with G, A pairs with U) to generate a sequence of genetic code-based matrices. In connection with these code-based matrices, we use the Hamming distance to generate a sequence of numerical matrices. We then further...

journal_title：Bulletin of mathematical biology

authors： He MX,Petoukhov SV,Ricci PE

更新日期：2004-09-01 00:00:00

abstract：:In this paper we introduce and study a model for electrical activity of cardiac membrane which incorporates only an inward and an outward current. This model is useful for three reasons: (1) Its simplicity, comparable to the FitzHugh-Nagumo model, makes it useful in numerical simulations, especially in two or three sp...

journal_title：Bulletin of mathematical biology

authors： Mitchell CC,Schaeffer DG

更新日期：2003-09-01 00:00:00

abstract：:Theoretical and empirical arguments are used to support the growth kinetics of disseminated tumors. Employing viable hypotheses, it is established that Gompertzian growth of disseminated cancer cells can be derived from a number of theoretical considerations. Empirical methods are used to validate and confirm the theo...

journal_title：Bulletin of mathematical biology

authors： Afenya EK,Calderón CP

更新日期：2000-05-01 00:00:00

abstract：:Distinct electrophysiological phenotypes are exhibited by biological cells that have differentiated into particular cell types. The usual approach when simulating the cardiac electrophysiology of tissue that includes different cell types is to model the different cell types as occupying spatially distinct yet coupled ...

journal_title：Bulletin of mathematical biology

authors： Bowler LA,Gavaghan DJ,Mirams GR,Whiteley JP

更新日期：2019-01-01 00:00:00

abstract：:Mechanical cell competition is important during tissue development, cancer invasion, and tissue ageing. Heterogeneity plays a key role in practical applications since cancer cells can have different cell stiffness and different proliferation rates than normal cells. To study this phenomenon, we propose a one-dimension...

journal_title：Bulletin of mathematical biology

authors： Murphy RJ,Buenzli PR,Baker RE,Simpson MJ

更新日期：2020-09-26 00:00:00

abstract：:The coordinated beating of motile cilia is responsible for ovum transport in the oviduct, transport of mucus in the respiratory tract, and is the basis of motility in many single-celled organisms. The beating of a single motile cilium is achieved by the ATP-driven activation cycles of thousands of dynein molecular mot...

journal_title：Bulletin of mathematical biology

authors： Yang X,Dillon RH,Fauci LJ

更新日期：2008-05-01 00:00:00

abstract：:A protein fold can be viewed as a self-avoiding walk in certain lattice model, and its contact map is a graph that represents the patterns of contacts in the fold. Goldman, Istrail, and Papadimitriou showed that a contact map in the 2D square lattice can be decomposed into at most two stacks and one queue. In the term...

journal_title：Bulletin of mathematical biology

authors： Guo QH,Sun LH,Wang J

更新日期：2017-01-01 00:00:00

abstract：:A kinetic model is proposed to delineate the factors that determine the coronary reactive hyperemic response (RHR) to transient ischemia. The model comprises of myocardial-interstitial (M) and vascular (V) compartments. Vasodilator metabolites (VM) are produced in the M compartment during the interval of coronary occl...

journal_title：Bulletin of mathematical biology

authors： Wong AY

更新日期：1995-01-01 00:00:00

abstract：:Studies have been done using networks to represent the spread of infectious diseases in populations. For diseases with exposed individuals corresponding to a latent period, an SEIR model is formulated using an edge-based approach described by a probability generating function. The basic reproduction number is computed...

journal_title：Bulletin of mathematical biology

authors： Alota CP,Pilar-Arceo CPC,de Los Reyes V AA

更新日期：2020-07-16 00:00:00

abstract：:This paper investigates cell proliferation dynamics in small tumor cell aggregates using an individual-based model (IBM). The simulation model is designed to study the morphology of the cell population and of the cell lineages as well as the impact of the orientation of the division plane on this morphology. Our IBM m...

journal_title：Bulletin of mathematical biology

authors： Leroy-Lerêtre M,Dimarco G,Cazales M,Boizeau ML,Ducommun B,Lobjois V,Degond P

更新日期：2017-10-01 00:00:00

abstract：:In this work, we present a pedagogical tumour growth example, in which we apply calibration and validation techniques to an uncertain, Gompertzian model of tumour spheroid growth. The key contribution of this article is the discussion and application of these methods (that are not commonly employed in the field of can...

journal_title：Bulletin of mathematical biology

authors： Collis J,Connor AJ,Paczkowski M,Kannan P,Pitt-Francis J,Byrne HM,Hubbard ME

更新日期：2017-04-01 00:00:00

abstract：:We study Eigen's quasispecies model in the asymptotic regime where the length of the genotypes goes to [Formula: see text] and the mutation probability goes to 0. A limiting infinite system of differential equations is obtained. We prove convergence of trajectories, as well as convergence of the equilibrium solutions....

journal_title：Bulletin of mathematical biology

authors： Dalmau J

更新日期：2018-07-01 00:00:00

abstract：:Advances in fluorescent labeling of cells as measured by flow cytometry have allowed for quantitative studies of proliferating populations of cells. The investigations (Luzyanina et al. in J. Math. Biol. 54:57-89, 2007; J. Math. Biol., 2009; Theor. Biol. Med. Model. 4:1-26, 2007) contain a mathematical model with fluo...

journal_title：Bulletin of mathematical biology

authors： Banks HT,Sutton KL,Thompson WC,Bocharov G,Roose D,Schenkel T,Meyerhans A

更新日期：2011-01-01 00:00:00

abstract：:Systemic chemotherapy is one of the main anticancer treatments used for most kinds of clinically diagnosed tumors. However, the efficacy of these drugs can be hampered by the physical attributes of the tumor tissue, such as tortuous vasculature, dense and fibrous extracellular matrix, irregular cellular architecture, ...

journal_title：Bulletin of mathematical biology

authors： Karolak A,Rejniak KA

更新日期：2019-09-01 00:00:00

abstract：:Recent experimental evidence suggests that vasculogenesis may play an important role in tumour vascularisation. While angiogenesis involves the proliferation and migration of endothelial cells (ECs) in pre-existing vessels, vasculogenesis involves the mobilisation of bone-marrow-derived endothelial progenitor cells (E...

journal_title：Bulletin of mathematical biology

authors： Stamper IJ,Byrne HM,Owen MR,Maini PK

更新日期：2007-11-01 00:00:00

abstract：:The accuracy of the Fitch method for reconstructing ancestral states on ultrametric phylogenetic trees is studied. Two recurrence relations for computing the accuracy are given here. Using these relations, we analyze the convergence of the accuracy of the Fitch method for reconstructing the root state on a complete bi...

journal_title：Bulletin of mathematical biology

authors： Zhang L,Shen J,Yang J,Li G

更新日期：2010-10-01 00:00:00

abstract：:A braced framework of tubular struts, in the walls and air spaces of frog lungs, suspends the respiratory surface and holds the lung open at zero transmural pressure withstanding imploding forces created by abdominal viscera, much as would the supports of a bell tent. The struts are tubes, having a larger second momen...

journal_title：Bulletin of mathematical biology

authors： Lawry J

更新日期：1999-07-01 00:00:00

abstract：:In this paper a general deterministic discrete-time metapopulation model with a finite number of habitat patches is analysed within the framework of adaptive dynamics. We study a general model and prove analytically that (i) if the resident populations state is a fixed point, then the resident strategy with no migrati...

journal_title：Bulletin of mathematical biology

authors： Parvinen K

更新日期：1999-05-01 00:00:00

abstract：:With increasing fishing pressures having brought several stocks to the brink of collapse, there is a need for developing efficient harvesting methods that account for factors beyond merely yield or profit. We consider the dynamics and management of a stage-structured fish stock. Our work is based on a consumer-resourc...

journal_title：Bulletin of mathematical biology

authors： Meng X,Lundström NL,Bodin M,Brännström Å

更新日期：2013-01-01 00:00:00

abstract：:Molecular motors such as kinesin and dynein are responsible for transporting material along microtubule networks in cells. In many contexts, motor dynamics can be modelled by a system of reaction-advection-diffusion partial differential equations (PDEs). Recently, quasi-steady-state (QSS) methods have been applied to ...

journal_title：Bulletin of mathematical biology

authors： Zmurchok C,Small T,Ward MJ,Edelstein-Keshet L

更新日期：2017-09-01 00:00:00

abstract：:We present a new symmetric model of the idiotypic immune network. The model specifies clones of B-lymphocytes and incorporates: (1) influx and decay of cells; (2) symmetric stimulatory and inhibitory idiotypic interactions; (3) an explicit affinity parameter (matrix); (4) external (i.e. non-idiotypic) antigens. Suppre...

journal_title：Bulletin of mathematical biology

authors： De Boer RJ,Hogeweg P

更新日期：1989-01-01 00:00:00

abstract：:A rather complete model of the gluconeogenic pathway was used, with the known separate pools of mitochondrial and cytosolic oxalacetate, malate and aspartate. The fumarase, malate dehydrogenase and glutamate oxalacetate transaminase reactions were assumed to be isotopically actively reversible, but none at isotopic eq...

journal_title：Bulletin of mathematical biology

authors： Rognstad R

更新日期：1995-07-01 00:00:00

abstract：:A rigorous Bayesian analysis is presented that unifies protein sequence-structure alignment and recognition. Given a sequence, explicit formulae are derived to select (1) its globally most probable core structure from a structure library; (2) its globally most probable alignment to a given core structure; (3) its most...

journal_title：Bulletin of mathematical biology

authors： Lathrop RH,Rogers RG Jr,Smith TF,White JV

更新日期：1998-11-01 00:00:00

abstract：:We study a recently discovered class of models for plateau bursting, inspired by models for endocrine pituitary cells. In contrast to classical models for fold-homoclinic (square-wave) bursting, the spikes of the active phase are not supported by limit cycles of the frozen fast subsystem, but are transient oscillation...

journal_title：Bulletin of mathematical biology

authors： Stern JV,Osinga HM,LeBeau A,Sherman A

更新日期：2008-01-01 00:00:00

abstract：:The mutation process is introduced into the colored coalescent theory. The mutation process can be viewed as an independent Poisson process running on the colored genealogical random tree generated by the colored coalescent process, with the edge lengths of the random tree serving as the time scale for the mutation pr...

journal_title：Bulletin of mathematical biology

authors： Tian JP,Lin XS

更新日期：2009-11-01 00:00:00

abstract：:In this paper we develop and extend a previous model of cell deformations, initially proposed to describe the dynamical behaviour of round-shaped cells such as keratinocytes or leukocytes, in order to take into account cell pseudopodial dynamics with large amplitude membrane deformations such as those observed in fibr...

journal_title：Bulletin of mathematical biology

authors： Stéphanou A,Chaplain MA,Tracqui P

更新日期：2004-09-01 00:00:00

abstract：:We have programmed a Monte Carlo simulation of the Q-cycle model of electron transport in cytochrome b(6)f complex, an enzyme in the photosynthetic pathway that converts sunlight into biologically useful forms of chemical energy. Results were compared with published experiments of Kramer and Crofts (Biochim. Biophys. ...

journal_title：Bulletin of mathematical biology

authors： Schumaker MF,Kramer DM

更新日期：2011-09-01 00:00:00