A Bayes-optimal sequence-structure theory that unifies protein sequence-structure recognition and alignment.

abstract：:Here, we consider a game-theoretic model of multilevel selection in which individuals compete based on their payoff and groups also compete based on the average payoff of group members. Our focus is on multilevel social dilemmas: games in which individuals are best off cheating, while groups of individuals do best whe...

journal_title：Bulletin of mathematical biology

authors： Cooney DB

更新日期：2020-05-30 00:00:00

abstract：:Mathematical models have been used to simulate HIV transmission and to study the use of preexposure prophylaxis (PrEP) for HIV prevention. Often a single intervention outcome over 10 years has been used to evaluate the effectiveness of PrEP interventions. However, different metrics express a wide variation over time a...

journal_title：Bulletin of mathematical biology

authors： Zhao Y,Dimitrov DT,Liu H,Kuang Y

更新日期：2013-04-01 00:00:00

abstract：:In this paper we use the Gray code representation of the genetic code C=00, U=10, G=11 and A=01 (C pairs with G, A pairs with U) to generate a sequence of genetic code-based matrices. In connection with these code-based matrices, we use the Hamming distance to generate a sequence of numerical matrices. We then further...

journal_title：Bulletin of mathematical biology

authors： He MX,Petoukhov SV,Ricci PE

更新日期：2004-09-01 00:00:00

abstract：:We develop a numerical method for estimating optimal parameters in a mathematical model of the within-host dynamics of malaria infection. The model consists of a quasilinear system of partial differential equations. Convergence theory for the computed parameters is provided. Following this analysis, we present several...

journal_title：Bulletin of mathematical biology

authors： Thibodeaux JJ,Schlittenhardt TP

更新日期：2011-11-01 00:00:00

abstract：:Understanding the life-history complex of eusociality has remained an enduring problem in evolutionary ecology, partially because natural selection models have considered traits in relative isolation. I aim for a more inclusive model that uses ecological interactions to predict the evolutionary existence of sexual rep...

journal_title：Bulletin of mathematical biology

authors： Witting L

更新日期：2007-05-01 00:00:00

abstract：:Metaecoepidemic models generalize metapopulation systems, combining local population dynamics with inter-patch migration coupled with an epidemic proliferation. A resource-consumer model is introduced with an ecosystem composed by two patches, in which consumers can freely move. A disease affects resources of the seco...

journal_title：Bulletin of mathematical biology

authors： Moulin T,Perasso A,Venturino E

更新日期：2020-07-07 00:00:00

abstract：:The human body's immune response to bacterial challenge, even when successful in controlling the infection, can result in negative consequences for the host, including reduced functionality of associated tissues. We present and analyze a low-dimensional mathematical model of this immune response to pathogen invasion, ...

journal_title：Bulletin of mathematical biology

authors： Caudill L,Lynch F

更新日期：2018-08-01 00:00:00

abstract：:Many aquatic organisms detect the presence of moving objects in their environment, such as predators, by sensing the hydrodynamic disturbances the movements produce. The resultant water flow is readily detectable by stationary organisms, but free-swimming organisms are carried with the surrounding water and may not de...

journal_title：Bulletin of mathematical biology

authors： Takagi D,Hartline DK

更新日期：2018-01-01 00:00:00

abstract：:Trichloroethylene (TCE) is an industrial chemical and an environmental contaminant. TCE and its metabolites may be carcinogenic and affect human health. Physiologically based pharmacokinetic (PBPK) models that differ in compartmentalization are developed for TCE metabolism in humans, and the focus of this investigatio...

journal_title：Bulletin of mathematical biology

authors： Yokley KA,Evans MV

更新日期：2007-11-01 00:00:00

abstract：:The coordinated beating of motile cilia is responsible for ovum transport in the oviduct, transport of mucus in the respiratory tract, and is the basis of motility in many single-celled organisms. The beating of a single motile cilium is achieved by the ATP-driven activation cycles of thousands of dynein molecular mot...

journal_title：Bulletin of mathematical biology

authors： Yang X,Dillon RH,Fauci LJ

更新日期：2008-05-01 00:00:00

abstract：:A stochastic SIRS epidemic model with nonlinear incidence rate and varying population size is formulated to investigate the effect of stochastic environmental variability on inter-pandemic transmission dynamics of influenza A. Sufficient conditions for extinction and persistence of the disease are established. In the ...

journal_title：Bulletin of mathematical biology

authors： Li D,Cui J,Liu M,Liu S

更新日期：2015-09-01 00:00:00

abstract：:Continuing the discussion of how children can modify and regularize linguistic inputs from adults, we present a new interpretation of existing algorithms to model and investigate the process of a learner learning from an inconsistent source. On the basis of this approach is a (possibly nonlinear) function (the update ...

journal_title：Bulletin of mathematical biology

authors： Ma T,Komarova NL

更新日期：2017-03-01 00:00:00

abstract：:Recent advances in virology, gene therapy, and molecular and cell biology have provided insight into the mechanisms through which viruses can boost the anti-tumor immune response, or can infect and directly kill tumor cells. A recent experimental report (Bridle et al. in Molec. Ther. 18(8):1430-1439, 2010) showed that...

journal_title：Bulletin of mathematical biology

authors： Eftimie R,Dushoff J,Bridle BW,Bramson JL,Earn DJ

更新日期：2011-12-01 00:00:00

abstract：:We study the emergence of collective spatio-temporal objects in biological systems by representing individually the elementary interactions between their microscopic components. We use the immune system as a prototype for such interactions. The results of this detailed explicit analysis are compared with the tradition...

journal_title：Bulletin of mathematical biology

authors： Louzoun Y,Solomon S,Atlan H,Cohen IR

更新日期：2003-05-01 00:00:00

abstract：:To investigate morphogenesis and in particular circularization mechanisms in young mycelia, we observe cultures of the zygomycete Mucor spinosus and develop discrete models of two-dimensional filamental branching growth. The models are based on the hypothesis that the fungus secretes a regulatory substance that diffus...

journal_title：Bulletin of mathematical biology

authors： Indermitte C,Liebling M,Clémençon H

更新日期：1994-07-01 00:00:00

abstract：:A significant conceptual difficulty in the use of switching systems to model regulatory networks is the presence of so-called "black walls," co-dimension 1 regions of phase space with a vector field pointing inward on both sides of the hyperplane. Black walls result from the existence of direct negative self-regulatio...

journal_title：Bulletin of mathematical biology

authors： Fan G,Cummins B,Gedeon T

更新日期：2016-06-01 00:00:00

abstract：:We describe and analyze a periodically-forced difference equation model for malaria in mosquitoes that captures the effects of seasonality and allows the mosquitoes to feed on a heterogeneous population of hosts. We numerically show the existence of a unique globally asymptotically stable periodic orbit and calculate ...

journal_title：Bulletin of mathematical biology

authors： Chitnis N,Hardy D,Smith T

更新日期：2012-05-01 00:00:00

abstract：:Synaptic spines grow as a consequence of the formation of F-actin filaments at the spine head. The dynamics of F-actin in the spine head upon excitation of N-methy-D-aspartate (NMDA) receptors has recently been investigated experimentally, but there is no quantitative account of how these dynamic changes occur upon ac...

journal_title：Bulletin of mathematical biology

authors： Bennett MR,Farnell L,Gibson WG

更新日期：2011-09-01 00:00:00

abstract：:Evidence suggests that many G protein-coupled receptors (GPCRs) are bound together forming dimers. The implications of dimerisation for cellular signalling outcomes, and ultimately drug discovery and therapeutics, remain unclear. Consideration of ligand binding and signalling via receptor dimers is therefore required ...

journal_title：Bulletin of mathematical biology

authors： White C,Bridge LJ

更新日期：2019-09-01 00:00:00

abstract：:Molecular motors such as kinesin and dynein are responsible for transporting material along microtubule networks in cells. In many contexts, motor dynamics can be modelled by a system of reaction-advection-diffusion partial differential equations (PDEs). Recently, quasi-steady-state (QSS) methods have been applied to ...

journal_title：Bulletin of mathematical biology

authors： Zmurchok C,Small T,Ward MJ,Edelstein-Keshet L

更新日期：2017-09-01 00:00:00

abstract：:Bacillus subtilis cells may opt to forgo normal cell division and instead form spores if subjected to certain environmental stimuli, for example nutrient deficiency or extreme temperature. The resulting spores are extremely resilient and can survive for extensive periods of time, importantly under particularly harsh c...

journal_title：Bulletin of mathematical biology

authors： Jabbari S,Heap JT,King JR

更新日期：2011-01-01 00:00:00

abstract：:A mathematical model for the plant-pollinator-robber interaction is studied to understand the factors leading to the widespread occurrence and stability of such interactions. In the interaction, a flowering plant provides resource for its pollinator and the pollinator has both positive and negative effects on the plan...

journal_title：Bulletin of mathematical biology

authors： Wang Y,DeAngelis DL,Holland JN

更新日期：2012-09-01 00:00:00

abstract：:The propagation of fire-diffuse-fire Ca(2+) waves through a three-dimensional rectangular domain is considered. The domain is infinite in extent in the direction of propagation but with lateral barriers to diffusion which contain Ca(2+) pumps. The Ca(2+) concentration profile due to the firing of a release site (spark...

journal_title：Bulletin of mathematical biology

authors： Lemon G

更新日期：2004-01-01 00:00:00

abstract：:Human T-cell lymphotropic virus type I (HTLV-I) infection in humans causes a chronic infection of CD4+ T cells, and is associated with various disease outcomes, among them with the development of adult T-cell leukemia (ATL). The T-cell dynamics after HTLV-I infection can be described in a mathematical model with coupl...

journal_title：Bulletin of mathematical biology

authors： Stilianakis NI,Seydel J

更新日期：1999-09-01 00:00:00

abstract：:Pseudomonas aeruginosa is a Gram-negative bacterium that is responsible for a wide range of infections in humans. Colonies employ quorum sensing (QS) to coordinate gene expression, including for virulence factors, swarming motility and complex social traits. The QS signalling system of P. aeruginosa is known to involv...

journal_title：Bulletin of mathematical biology

authors： Alfiniyah C,Bees MA,Wood AJ

更新日期：2017-06-01 00:00:00

abstract：:The apparent synchronisation of spatially discrete populations is a well documented phenomenon. However, it is not clear what the governing mechanisms are for this synchrony, and whether they are robust over a range of environmental conditions and patch specific population dynamic behaviours. In this paper, we explore...

journal_title：Bulletin of mathematical biology

authors： Hillary RM,Bees MA

更新日期：2004-11-01 00:00:00

abstract：:This paper presents a biomechanical model for the small pits, called crypts, that line the colon. A continuum approach is adopted, with the crypt epithelium modelled as a growing beam attached to the underlying lamina by cell bonds, which generate tension within the layer. These cell attachments are assumed to be visc...

journal_title：Bulletin of mathematical biology

authors： Edwards CM,Chapman SJ

更新日期：2007-08-01 00:00:00

abstract：:Spatial interactions are key determinants in the dynamics of many epidemiological and ecological systems; therefore it is important to use spatio-temporal models to estimate essential parameters. However, spatially-explicit data sets are rarely available; moreover, fitting spatially-explicit models to such data can be...

journal_title：Bulletin of mathematical biology

authors： Filipe JA,Otten W,Gibson GJ,Gilligan CA

更新日期：2004-03-01 00:00:00

abstract：:In this paper we develop and extend a previous model of cell deformations, initially proposed to describe the dynamical behaviour of round-shaped cells such as keratinocytes or leukocytes, in order to take into account cell pseudopodial dynamics with large amplitude membrane deformations such as those observed in fibr...

journal_title：Bulletin of mathematical biology

authors： Stéphanou A,Chaplain MA,Tracqui P

更新日期：2004-09-01 00:00:00

abstract：:Systemic chemotherapy is one of the main anticancer treatments used for most kinds of clinically diagnosed tumors. However, the efficacy of these drugs can be hampered by the physical attributes of the tumor tissue, such as tortuous vasculature, dense and fibrous extracellular matrix, irregular cellular architecture, ...

journal_title：Bulletin of mathematical biology

authors： Karolak A,Rejniak KA

更新日期：2019-09-01 00:00:00