Nuclear Overhauser effect studies of the conformation of Co(NH3)4ATP bound to kidney Na,K-ATPase.

Abstract:

:Transferred nuclear Overhauser effect measurements (in the two-dimensional mode) have been used to determine the three-dimensional conformation of an ATP analogue, Co(NH3)4ATP, at the active site of sheep kidney Na,K-ATPase. Previous studies have shown that Co(NH3)4ATP is a competitive inhibitor with respect to MnATP for the Na,K-ATPase [Klevickis, C., & Grisham, C.M. (1982) Biochemistry 21, 6979. Gantzer, M.L., et al. (1982) Biochemistry 21, 4083]. Nine unique proton-proton distances on ATPase-bound Co(NH3)4ATP were determined from the initial build-up rates of the cross-peaks of the 2D-TRNOE data sets. These distances, taken together with previous 31P and 1H relaxation measurements with paramagnetic probes, are consistent with a single nucleotide conformation at the active site. The bound Co(NH3)4ATP) adopts an anti conformation, with a glycosidic torsion angle of 35 degrees, and the conformation of the ribose ring is slightly N-type (C2'-exo, C3'-endo). The delta and gamma torsional angles in this conformation are 100 degrees and 178 degrees, respectively. The nucleotide adopts a bent configuration, in which the triphosphate chain lies nearly parallel to the adenine moiety. Mn2+ bound to a single, high-affinity site on the ATPase lies above and in the plane of the adenine ring. The distances from enzyme-bound Mn2+ to N6 and N7 are too large for first coordination sphere complexes, but are appropriate for second-sphere complexes involving, for example, intervening hydrogen-bonded water molecules. The NMR data also indicate that the structure of the bound ATP analogue is independent of the conformational state of the enzyme.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Stewart JM,Jørgensen PL,Grisham CM

doi

10.1021/bi00437a028

subject

Has Abstract

pub_date

1989-05-30 00:00:00

pages

4695-701

issue

11

eissn

0006-2960

issn

1520-4995

journal_volume

28

pub_type

杂志文章
  • Calorimetric studies on the interaction of horse ferricytochrome c and yeast cytochrome c peroxidase.

    abstract::The binding of horse ferricytochrome c to yeast cytochrome c peroxidase at pH 6.0 in 8.7 mM phosphate buffer (0.0100 M ionic strength) is characterized by a small, unfavorable enthalpy change (+1.91 +/- 0.16 kcal mol-1) and a large, positive entropy change (+37 +/- 1 eu). The free energy of binding depends strongly up...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00026a022

    authors: Kresheck GC,Vitello LB,Erman JE

    更新日期:1995-07-04 00:00:00

  • All three LDL receptor homology regions of the LDL receptor-related protein bind multiple ligands.

    abstract::The three complete human LDL receptor homology regions of the LDL receptor-related protein (sLRP2, sLRP3, and sLRP4) have been expressed in Pichia pastoris SMD1168 with constitutive coexpression of the receptor-associated protein (RAP). Each sLRP was purified to homogeneity after deglycosylation using a combination of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034752s

    authors: Croy JE,Shin WD,Knauer MF,Knauer DJ,Komives EA

    更新日期:2003-11-11 00:00:00

  • Acquisition of an insertion peptide for efficient aminoacylation by a halophile tRNA synthetase.

    abstract::Enzymes of halophilic organisms contain unusual peptide motifs that are absent from their mesophilic counterparts. The functions of these halophile-specific peptides are largely unknown. Here we have identified an unusual peptide that is unique to several halophile archaeal cysteinyl-tRNA synthetases (CysRS), which ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0521386

    authors: Evilia C,Hou YM

    更新日期:2006-06-06 00:00:00

  • Structure, spectroscopic, and redox properties of Rhodobacter sphaeroides reaction centers bearing point mutations near the primary electron donor.

    abstract::Single mutations of three amino acid residues in the vicinity of the primary electron donor, P, in the reaction center (RC) from Rhodobacter (Rb.) sphaeroides were constructed and characterized in order to study the effects of hydrogen-bonding on the physical properties of P. The mutations, Phe M197-->Tyr, Met L248-->...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00210a041

    authors: Wachtveitl J,Farchaus JW,Das R,Lutz M,Robert B,Mattioli TA

    更新日期:1993-11-30 00:00:00

  • Oxidative titrations of reduced cytochrome aa3: anisotropic extinction behavior observed in the heme alpha-band region.

    abstract::Direct chemical titrations of reduced, purified cytochrome aa3 were monitored at 604 nm. Anaerobic oxidation by potassium ferricyanide or 1,1'-bis(hydroxymethyl)-ferricinium ion was compared with the natural substrate, molecular oxygen. The four electrons from reduced cytochrome aa3 were donated to one oxygen molecule...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00626a014

    authors: Schroedl NA,Hartzell CR

    更新日期:1977-04-05 00:00:00

  • Nematode Sgt1-homologue D1054.3 binds open and closed conformations of Hsp90 via distinct binding sites.

    abstract::Heat shock protein 90 (Hsp90) is a highly conserved ATP-driven machine involved in client protein maturation, folding, and activation. The chaperone is supported by a set of cochaperones that confer client specificities. One of those proteins is the suppressor of G2 allele of skp1 (Sgt1), which participates together w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5000542

    authors: Eckl JM,Drazic A,Rutz DA,Richter K

    更新日期:2014-04-22 00:00:00

  • Gene heterogeneity: a basis for alternative 5.8S rRNA processing.

    abstract::Two bands of 5.8S rRNA were observed when the total RNA isolated from rat or mouse tissue was separated by electrophoresis on high-resolution polyacrylamide gels under denaturing conditions. The minor form, with a lower mobility, represented 15-35% of the total 5.8S rRNA, depending on the source of the tissue. Sequenc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00311a011

    authors: Smith SD,Banerjee N,Sitz TO

    更新日期:1984-07-31 00:00:00

  • Aminoethylcysteine can replace the function of the essential active site lysine of Pseudomonas mevalonii 3-hydroxy-3-methylglutaryl coenzyme A reductase.

    abstract::The biodegradative 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) reductase of Pseudomonas mevalonii catalyzes the NAD(+)-dependent conversion of (S)-HMG-CoA to (R)-mevalonate. Crystallographic analysis of abortive ternary complexes of this enzyme revealed lysine 267 located at a position in the active site, suggesti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9902687

    authors: Bochar DA,Tabernero L,Stauffacher CV,Rodwell VW

    更新日期:1999-07-13 00:00:00

  • Solution NMR characterizations of oligomerization and dynamics of equine infectious anemia virus matrix protein and its interaction with PIP2.

    abstract::Budding of retroviruses requires the structural precursor polyprotein, Gag, to target the plasma membrane through its N-terminal matrix (MA) domain. For HIV-1, the interaction between membrane signaling molecule phosphatidylinositol 4,5-diphosphate (PIP2) and MA induces the exposure of myristate and promotes membrane ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701984h

    authors: Chen K,Bachtiar I,Piszczek G,Bouamr F,Carter C,Tjandra N

    更新日期:2008-02-19 00:00:00

  • Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy.

    abstract::The solution conformation of the ribonuclease barnase has been determined by using 1H nuclear magnetic resonance (NMR) spectroscopy. The 20 structures were calculated by using 853 interproton distance restraints obtained from analyses of two-dimensional nuclear Overhauser spectra, 72 phi and 53 chi 1 torsion angle res...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00099a030

    authors: Bycroft M,Ludvigsen S,Fersht AR,Poulsen FM

    更新日期:1991-09-03 00:00:00

  • Interaction of alamethicin with lecithin bilayers: a 31P and 2H NMR study.

    abstract::The interaction of alamethicin with artificial lecithin multilamellar dispersions was investigated by nuclear magnetic resonance (NMR) and Raman spectroscopies. 31P NMR studies revealed perturbation of the lipid head groups in the presence of the icosapeptide. Simulation of the 31P NMR spectra indicated that the obser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00347a019

    authors: Banerjee U,Zidovetzki R,Birge RR,Chan SI

    更新日期:1985-12-17 00:00:00

  • Crystal structures of antibiotic-bound complexes of aminoglycoside 2''-phosphotransferase IVa highlight the diversity in substrate binding modes among aminoglycoside kinases.

    abstract::Aminoglycoside 2''-phosphotransferase IVa [APH(2'')-IVa] is a member of a family of bacterial enzymes responsible for medically relevant resistance to antibiotics. APH(2'')-IVa confers high-level resistance against several clinically used aminoglycoside antibiotics in various pathogenic Enterococcus species by phospho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200747f

    authors: Shi K,Houston DR,Berghuis AM

    更新日期:2011-07-19 00:00:00

  • Purification and characteristics of photoreceptor light-activated guanosinetriphosphatase.

    abstract::We describe a reconstitution of light-activated vertebrate photoreceptor GTPase and a purification of the GTP-binding protein (G protein), which is a component of the GTPase and modulates the light-activated phosphodiesterase (PDE) enzyme system. Rod outer segments (ROS) of bull frogs were treated with ethylenediamine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00528a003

    authors: Shinozawa T,Bitensky MW

    更新日期:1981-12-08 00:00:00

  • Geometry of the phosphodiester backbone in the A form of deoxyribonucleic acid determined by phosphorus-31 nuclear magnetic resonance spectroscopy.

    abstract::31P NMR spectra were obtained from poly(dA-dT) . poly(dA-dT) fibers which gave an X-ray diffraction pattern similar to that of the A form of natural deoxyribonucleic acid (DNA). The analysis of the line shape indicated that the A form of poly(dA-dT) . poly(dA-dT) has a single uniform backbone conformation; the orienta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00507a013

    authors: Shindo H,Wooten JB,Zimmerman SB

    更新日期:1981-02-17 00:00:00

  • Effects of Olive Metabolites on DNA Cleavage Mediated by Human Type II Topoisomerases.

    abstract::Several naturally occurring dietary polyphenols with chemopreventive or anticancer properties are topoisomerase II poisons. To identify additional phytochemicals that enhance topoisomerase II-mediated DNA cleavage, a library of 341 Mediterranean plant extracts was screened for activity against human topoisomerase IIα....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00162

    authors: Vann KR,Sedgeman CA,Gopas J,Golan-Goldhirsh A,Osheroff N

    更新日期:2015-07-28 00:00:00

  • Kinetic comparison of bovine blood coagulation factors IXa alpha and IXa beta toward bovine factor X.

    abstract::The Vmax/Km (microM -1 min -1.) for bovine factor X activation by bovine factor IXa alpha, in the presence of sufficient [Ca2+] to saturate the initial reaction rate, was 0.007. When factor IXa beta was substituted for factor IXa alpha in this reaction, the Vmax/Km decreased to 0.001, suggesting that factor IXa alpha ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00286a007

    authors: Link RP,Castellino FJ

    更新日期:1983-08-16 00:00:00

  • Minor influence of sialic acid on conformation of a membrane-bound oligosaccharide recognition site.

    abstract::Wideline 2H NMR spectroscopy was used to assess the conformational and orientational effects of N-acetylneuraminic acid (NeuAc) (sialic acid) as a component of a particular oligosaccharide chain at a bilayer membrane surface. For this purpose, three glycosphingolipids, sharing a neutral core tetrasaccharide and differ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952964m

    authors: Jones DH,Barber KR,Grant CW

    更新日期:1996-04-16 00:00:00

  • Inhibitors can activate proteases to catalyze the synthesis and hydrolysis of peptides.

    abstract::Competitive inhibitors can activate proteases (papain, trypsin, and cathepsin S) to catalyze the synthesis of peptide bonds and accelerate the hydrolysis of poor substrates (from 1 to 99%). Reaction mixtures contained intermediate molecules that were formed by the coupling of the inhibitor with the poor substrate. Thi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061910h

    authors: Schechter I,Ziv E

    更新日期:2006-12-12 00:00:00

  • Sequence of histone 2B of Drosophila melanogaster.

    abstract::The complete sequence of histone 2B of Drosophila has been determined by using an improved Beckman sequenator. Comparing these data with those previously published by other investigators on the histone 2B of calf [Iwai, K., Hayashi, H., & Ishikawa, K. (1972) J. Biochem. (Tokyo) 72, 357--367], trout [Koostra, A., & Bai...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00592a025

    authors: Elgin SC,Schilling J,Hood LE

    更新日期:1979-12-11 00:00:00

  • Identification of tyrosine residues on ELMO1 that are phosphorylated by the Src-family kinase Hck.

    abstract::The SH3 and SH2 domains of hematopoietic cell kinase (Hck) play important roles in substrate targeting. To identify new components of Hck signaling pathways, we identified proteins that bind to the SH3 domain of Hck (Scott et al. (2002) J. Biol. Chem. 277, 28238). One such protein was ELMO1, the mammalian orthologue o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0500832

    authors: Yokoyama N,deBakker CD,Zappacosta F,Huddleston MJ,Annan RS,Ravichandran KS,Miller WT

    更新日期:2005-06-21 00:00:00

  • A coupled dinuclear iron cluster that is perturbed by substrate binding in myo-inositol oxygenase.

    abstract::myo-Inositol oxygenase (MIOX) uses iron as its cofactor and dioxygen as its cosubstrate to effect the unique, ring-cleaving, four-electron oxidation of its cyclohexan-(1,2,3,4,5,6-hexa)-ol substrate to d-glucuronate. The nature of the iron cofactor and its interaction with the substrate, myo-inositol (MI), have been p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0519607

    authors: Xing G,Hoffart LM,Diao Y,Prabhu KS,Arner RJ,Reddy CC,Krebs C,Bollinger JM Jr

    更新日期:2006-05-02 00:00:00

  • A fluorescence photobleaching study of vesicular stomatitis virus infected BHK cells. Modulation of G protein mobility by M protein.

    abstract::The mobility of vesicular stomatitis virus (VSV) G protein on the surface of infected BHK cells was studied by using the technique of fluorescence photobleaching recovery. The fraction of surface G protein that was mobile in that time scale of the measurement (minutes) was at least 75%, a relatively high value among c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00508a047

    authors: Reidler JA,Keller PM,Elson EL,Lenard J

    更新日期:1981-03-03 00:00:00

  • DNA dynamics in RecA-DNA filaments: ATP hydrolysis-related flexibility in DNA.

    abstract::RecA-catalyzed DNA recombination is initiated by a mandatory, high-energy form of DNA in RecA-nucleoprotein filaments, where bases are highly unstacked and the backbone is highly unwound. Interestingly, only the energetics consequent to adenosine triphosphate (ATP) binding, rather than its hydrolysis, seems sufficient...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034667k

    authors: Ramreddy T,Sen S,Rao BJ,Krishnamoorthy G

    更新日期:2003-10-21 00:00:00

  • Escherichia coli aromatic amino acid aminotransferase: characterization and comparison with aspartate aminotransferase.

    abstract::Aromatic amino acid aminotransferase (ArAT) from Escherichia coli was overexpressed in E. coli cells, purified, and characterized. The enzyme was similar to aspartate aminotransferase (AspAT) of E. coli in many aspects, such as gross protein structure and spectroscopic properties. The reactions of pyridoxal 5'-phospha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00096a036

    authors: Hayashi H,Inoue K,Nagata T,Kuramitsu S,Kagamiyama H

    更新日期:1993-11-16 00:00:00

  • Secondary structure in properdin of the complement cascade and related proteins: a study by Fourier transform infrared spectroscopy.

    abstract::Six structural repeat motifs of 58 amino acids are found in the sequence of both mouse and human properdins. Twelve more examples of the motif are available from the sequences of thrombospondin, the terminal complement components, and the thrombospondin-related anonymous protein. The averaged Robson and Chou-Fasman se...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00444a007

    authors: Perkins SJ,Nealis AS,Haris PI,Chapman D,Goundis D,Reid KB

    更新日期:1989-09-05 00:00:00

  • Structural and functional roles of the cysteine residues of Bacillus stearothermophilus farnesyl diphosphate synthase.

    abstract::p-(Chloromercuri)benzoic acid inhibited the catalytic activity of Bacillus stearothermophilus farnesyl diphosphate synthase (FPP synthase), which contains only two cysteine residues at positions 73 and 289. In order to explore the role of the cysteine residues, either or both of them were replaced with phenylalanine o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00208a015

    authors: Koyama T,Obata S,Saito K,Takeshita-Koike A,Ogura K

    更新日期:1994-10-25 00:00:00

  • Mechanistic studies examining the efficiency and fidelity of DNA synthesis by the 3TC-resistant mutant (184V) of HIV-1 reverse transcriptase.

    abstract::A single amino acid substitution from methionine-184 to valine (M184V) of HIV-1 reverse transcriptase (RT) evokes the 1000-fold 3TC (Lamivudine) resistance by the HIV-1 virus observed in the clinic. The M184V mutant HIV-1 RT was studied to assess its catalytic efficiency during single nucleotide incorporation using a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990709m

    authors: Feng JY,Anderson KS

    更新日期:1999-07-20 00:00:00

  • Tandem GA residues on opposite sides of the loop in molecular beacon-like DNA hairpins compact the loop and increase hairpin stability.

    abstract::The free solution electrophoretic mobilities and thermal stabilities of hairpins formed by two complementary 26-nucleotide oligomers have been measured by capillary electrophoresis. The oligomers are predicted to form molecular beacon-like hairpins with 5 bp stems and 16 nucleotides in the loop. One hairpin, called ha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201263n

    authors: Chang CY,Stellwagen NC

    更新日期:2011-10-25 00:00:00

  • Characterization of an Arabidopsis calmodulin-like domain protein kinase purified from Escherichia coli using an affinity sandwich technique.

    abstract::A full-length cDNA encoding a calcium-dependent protein kinase with a calmodulin-like domain from Arabidopsis thaliana (AK-1 for Arabidopsis kinase-1) has been expressed as a fusion protein (called AK-1-6H) in Escherichia coli and purified to near homogeneity with high specific activity (typically 2000 nmol min-1 mg-1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00174a008

    authors: Binder BM,Harper JF,Sussman MR

    更新日期:1994-03-01 00:00:00

  • Effect of H+ on the K+ activation of adenosine-5'-monophosphate aminohydrolase.

    abstract::The activation of adenosine-5'-monophosphate aminohydrolase from rabbit skeletal muscle by H+ has been demonstrated. Evidence is presented which indicates that the binding of H+ and K+ is linked, in that the dissociation constant (KA) for K+ activation is reduced as the pH is lowered. Concomitantly, the pK of several ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00641a013

    authors: Campbell JC,Suelter CH

    更新日期:1977-11-01 00:00:00