Nematode Sgt1-homologue D1054.3 binds open and closed conformations of Hsp90 via distinct binding sites.

Abstract:

:Heat shock protein 90 (Hsp90) is a highly conserved ATP-driven machine involved in client protein maturation, folding, and activation. The chaperone is supported by a set of cochaperones that confer client specificities. One of those proteins is the suppressor of G2 allele of skp1 (Sgt1), which participates together with Hsp90 in the immune responses of plants. Sgt1 consists of three domains: a TPR-, CS-, and SGS-domain, conserved in plants, yeast, and humans. The TPR-domain though is lacking in nematodes and insects. We observe that the Caenorhabditis elegans Sgt1 homologue D1054.3 binds to Hsp90 in the absence of nucleotides but much stronger in the presence of ATP and ATPγS. The latter binding mode is similar to p23, another CS-domain containing Hsp90 cofactor, even though binding is not observable for p23 in the absence of nucleotides. We use point mutations in Hsp90, which accumulate different conformations in the ATPase cycle, to differentiate between binding to open and closed Hsp90 conformations. These data support a strong contribution of the Hsp90 conformation to Sgt1 binding and highlight the ability of this cofactor to interact with all known Hsp90 conformations albeit with different affinities.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Eckl JM,Drazic A,Rutz DA,Richter K

doi

10.1021/bi5000542

subject

Has Abstract

pub_date

2014-04-22 00:00:00

pages

2505-14

issue

15

eissn

0006-2960

issn

1520-4995

journal_volume

53

pub_type

杂志文章
  • NMR solution structure of the C-terminal fragment 255-316 of thermolysin: a dimer formed by subunits having the native structure.

    abstract::The solution structure of the C-terminal fragment 255-316 of thermolysin has been determined by two-dimensional proton NMR methods. For this disulfide-free fragment there was a previous proposal according to which it would fold into a stable helical structure forming a dimer at concentrations above 0.06 mM. A complete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00253a023

    authors: Rico M,Jiménez MA,González C,De Filippis V,Fontana A

    更新日期:1994-12-13 00:00:00

  • 3-Methyladenine and 7-methylguanine exhibit no preferential removal from the transcribed strand of the dihydrofolate reductase gene in Chinese hamster ovary B11 cells.

    abstract::The removal of cylclobutane pyrimidine dimers from cellular DNA occurs preferentially in actively transcribed genes of cells subjected to ultraviolet radiation. In contrast, reports concerning the transcription-dependent repair of N-methylpurines formed in cellular DNA following exposure to methylating agents are quit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00005a037

    authors: Wang W,Sitaram A,Scicchitano DA

    更新日期:1995-02-07 00:00:00

  • Enhancement, relaxation, and reversal of the stereoselectivity for phosphotriesterase by rational evolution of active site residues.

    abstract::The factors that govern the substrate reactivity and stereoselectivity of phosphotriesterase (PTE) toward organophosphotriesters containing various combinations of methyl, ethyl, isopropyl, and phenyl substituents at the phosphorus center were determined by systematic alterations in the dimensions of the active site. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001549d

    authors: Chen-Goodspeed M,Sogorb MA,Wu F,Raushel FM

    更新日期:2001-02-06 00:00:00

  • Triplex formation by oligonucleotides containing 5-(1-propynyl)-2'-deoxyuridine: decreased magnesium dependence and improved intracellular gene targeting.

    abstract::Oligonucleotides capable of sequence-specific triple helix formation have been proposed as DNA binding ligands useful for modulation of gene expression and for directed genome modification. However, the effectiveness of such triplex-forming oligonucleotides (TFOs) depends on their ability to bind to their target sites...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982290q

    authors: Lacroix L,Lacoste J,Reddoch JF,Mergny JL,Levy DD,Seidman MM,Matteucci MD,Glazer PM

    更新日期:1999-02-09 00:00:00

  • Plasticity of amyloid fibrils.

    abstract::In experiments designed to characterize the basis of amyloid fibril stability through mutational analysis of the Abeta (1-40) molecule, fibrils exhibit consistent, significant structural malleability. In these results, and in other properties, amyloid fibrils appear to more resemble plastic materials generated from sy...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0620959

    authors: Wetzel R,Shivaprasad S,Williams AD

    更新日期:2007-01-09 00:00:00

  • Site-directed mutagenesis of putative active site residues of 5-enolpyruvylshikimate-3-phosphate synthase.

    abstract::The site-directed mutagenesis of a number of proposed active site residues of 5-enolpyruvyl shikimate-3-phosphate (EPSP) synthase is reported. Several of these mutations resulted in complete loss of enzyme activity indicating that these residues are probably involved with catalysis, notably K22R, K411R, D384A, R27A, R...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9815142

    authors: Shuttleworth WA,Pohl ME,Helms GL,Jakeman DL,Evans JN

    更新日期:1999-01-05 00:00:00

  • Identification of the heme-modified peptides from cumene hydroperoxide-inactivated cytochrome P450 3A4.

    abstract::Cumene hydroperoxide-mediated (CuOOH-mediated) inactivation of cytochromes P450 (CYPs) results in destruction of their prosthetic heme to reactive fragments that irreversibly bind to the protein. We have attempted to characterize this process structurally, using purified, 14C-heme labeled, recombinant human liver P450...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9808464

    authors: He K,Bornheim LM,Falick AM,Maltby D,Yin H,Correia MA

    更新日期:1998-12-15 00:00:00

  • NMR characterization of substrate binding in the phthalate dioxygenase system.

    abstract::The paramagnetic enhancements in the NMR relaxation rates for the fluorine in fluorophthalates have been used to determine the position of the phthalate with respect to the mononuclear metal ion in native and metal-substituted derivatives of phthalate dioxygenase (PDO). These studies show directly that the substrate i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990431y

    authors: Tierney DL,Gassner GT,Luchinat C,Bertini I,Ballou DP,Penner-Hahn JE

    更新日期:1999-08-24 00:00:00

  • Distribution of cytokinin-active nucleosides in isoaccepting transfer ribonucleic acids from Agrobacterium tumefaciens.

    abstract::The cytokinin-active isoprenoid nucleosides of Agrobacterium tumefaciens transfer ribonucleic acid were identified by high-pressure liquid chromatography, permethylation, and mass spectroscopy. Besides the expected 6-[(3-methylbut-2-enyl)amino]-9-(beta-D-ribofuranosyl)purine (i6A) and its 2-methylthio derivative (ms2i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00524a014

    authors: Morris RO,Regier DA,Olson RM Jr,Struxness LA,Armstrong DJ

    更新日期:1981-10-13 00:00:00

  • Cuprizone Intoxication Induces Cell Intrinsic Alterations in Oligodendrocyte Metabolism Independent of Copper Chelation.

    abstract::Cuprizone intoxication is a common animal model used to test myelin regenerative therapies for the treatment of diseases such as multiple sclerosis. Mice fed this copper chelator develop reversible, region-specific oligodendrocyte loss and demyelination. While the cellular changes influencing the demyelinating process...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01072

    authors: Taraboletti A,Walker T,Avila R,Huang H,Caporoso J,Manandhar E,Leeper TC,Modarelli DA,Medicetty S,Shriver LP

    更新日期:2017-03-14 00:00:00

  • Formation of an 8-hydroxyguanine moiety in deoxyribonucleic acid on gamma-irradiation in aqueous solution.

    abstract::Isolation and characterization of a novel radiation-induced product, i.e., the 8-hydroxyguanine residue, produced in deoxyribonucleic acid (DNA), 2'-deoxyguanosine, and 2'-deoxyguanosine 5'-monophosphate by gamma-irradiation in aqueous solution, are described. For this purpose, gamma-irradiated DNA was first hydrolyze...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00337a032

    authors: Dizdaroglu M

    更新日期:1985-07-30 00:00:00

  • Role of the helical structure of the N-terminal region of Plasmodium falciparum merozoite surface protein 2 in fibril formation and membrane interaction.

    abstract::Merozoite surface protein 2 (MSP2), an abundant glycosylphosphatidylinositol-anchored protein on the surface of Plasmodium falciparum merozoites, is a promising malaria vaccine candidate. MSP2 is intrinsically disordered and forms amyloid-like fibrils in solution under physiological conditions. The 25 N-terminal resid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201880s

    authors: Zhang X,Adda CG,Low A,Zhang J,Zhang W,Sun H,Tu X,Anders RF,Norton RS

    更新日期:2012-02-21 00:00:00

  • Presence of two rhodopsin intermediates responsible for transducin activation.

    abstract::To identify how many rhodopsin intermediates interact with retinal G-protein transducin, the photobleaching process of chicken rhodopsin has been investigated in the presence or absence of transducin by means of time-resolved low-temperature spectroscopy. Singular value decomposition (SVD) analysis of the spectral dat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970932o

    authors: Tachibanaki S,Imai H,Mizukami T,Okada T,Imamoto Y,Matsuda T,Fukada Y,Terakita A,Shichida Y

    更新日期:1997-11-18 00:00:00

  • Fourier transform Raman spectroscopy of the bacteriorhodopsin mutant Tyr-185-->Phe: formation of a stable O-like species during light adaptation and detection of its transient N-like photoproduct.

    abstract::Near-infrared FT-Raman spectroscopy can be used to measure the vibrations of the bacteriorhodopsin (bR) chromophore without the disadvantage of conventional visible resonance Raman spectroscopy, where the visible excitation drives the bR photoreactions. We utilized this technique to investigate the light-dark adaptati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00060a020

    authors: Rath P,Krebs MP,He Y,Khorana HG,Rothschild KJ

    更新日期:1993-03-09 00:00:00

  • Identity of the axial ligand of the high-spin heme in cytochrome oxidase: spectroscopic characterization of mutants in the bo-type oxidase of Escherichia coli and the aa3-type oxidase of Rhodobacter sphaeroides.

    abstract::Prokaryotic and eukaryotic cytochrome c oxidases and several bacterial ubiquinol oxidases compose a superfamily of heme-copper oxidases. These enzymes are terminal components of aerobic respiratory chains, the principal energy-generating systems of aerobic organisms. Two such heme-copper oxidases are the aa3-type cyto...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00091a046

    authors: Calhoun MW,Thomas JW,Hill JJ,Hosler JP,Shapleigh JP,Tecklenburg MM,Ferguson-Miller S,Babcock GT,Alben JO,Gennis RB

    更新日期:1993-10-12 00:00:00

  • 3'-Phosphoadenosine 5'-phosphosulfate binding site of flavonol 3-sulfotransferase studied by affinity chromatography and 31P NMR.

    abstract::The function of Lys-59, Arg-141, and Arg-277 in PAPS binding and catalysis of the flavonol 3-sulfotransferase was investigated. Affinity chromatography of conservative mutants with PAPS analogues allowed us to determine that Lys-59 interacts with the 5' portion of the nucleotide, while Arg-141 interacts with the 3' po...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982239m

    authors: Marsolais F,Laviolette M,Kakuta Y,Negishi M,Pedersen LC,Auger M,Varin L

    更新日期:1999-03-30 00:00:00

  • Cooperative binding of R17 coat protein to RNA.

    abstract::The binding of the R17 coat protein to synthetic RNAs containing one or two coat protein binding sites was characterized by using nitrocellulose filter and gel-retention assays. RNAs with two available sites bound coat protein in a cooperative manner, resulting in a higher affinity and reduced sensitivity to pH, ionic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00502a006

    authors: Witherell GW,Wu HN,Uhlenbeck OC

    更新日期:1990-12-18 00:00:00

  • Role of Phe1010 in light-induced structural changes of the neo1-LOV2 domain of Adiantum.

    abstract::Phototropin (phot) is a blue-light sensor protein that elicits several photo responses in plants. Phototropin has two flavin mononucleotide (FMN)-binding domains, LOV1 and LOV2, in its N-terminal half. The C-terminal half is a blue-light-regulated Ser/Thr kinase. Various functional studies have reported that only LOV2...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701851v

    authors: Yamamoto A,Iwata T,Tokutomi S,Kandori H

    更新日期:2008-01-22 00:00:00

  • The A-state of barnase.

    abstract::The acid-induced denaturation of barnase and its mutants has been analyzed to search for partly-folded intermediates. Differential scanning calorimetry of barnase deviates from two-state behavior below pH 4.0 at low ionic strength, with the maximum discrepancy at pH 2.7. Addition of 200 mM KCl apparently restores the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00203a015

    authors: Sanz JM,Johnson CM,Fersht AR

    更新日期:1994-09-20 00:00:00

  • Using Tetracysteine-Tagged TDP-43 with a Biarsenical Dye To Monitor Real-Time Trafficking in a Cell Model of Amyotrophic Lateral Sclerosis.

    abstract::TAR DNA-binding protein 43 (TDP-43) has been identified as the major constituent of the proteinaceous inclusions that are characteristic of most forms of amyotrophic lateral sclerosis (ALS) and ubiquitin positive frontotemporal lobar degeneration (FTLD). Wild type TDP-43 inclusions are a pathological hallmark of >95% ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00592

    authors: Ng JSW,Hanspal MA,Matharu NS,Barros TP,Esbjörner EK,Wilson MR,Yerbury JJ,Dobson CM,Kumita JR

    更新日期:2019-10-01 00:00:00

  • Structural basis of the anionic interface preference and kcat* activation of pancreatic phospholipase A2.

    abstract::Pancreatic phospholipase A(2) (PLA2) shows a strong preference for the binding to the anionic interface and a consequent allosteric activation. In this paper, we show that virtually all the preference is mediated through 3 (Lys-53, -56, and -120) of the 12 cationic residues of bovine pancreatic PLA2. The lysine-to-met...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000740k

    authors: Yu BZ,Poi MJ,Ramagopal UA,Jain R,Ramakumar S,Berg OG,Tsai MD,Sekar K,Jain MK

    更新日期:2000-10-10 00:00:00

  • Binding of a photoaffinity analogue of glutathione to MRP1 (ABCC1) within two cytoplasmic regions (L0 and L1) as well as transmembrane domains 10-11 and 16-17.

    abstract::MRP1 (or ABCC1) is an ABC membrane protein that transports a wide range of natural products as well as glutathione (GSH)-, glucuronate-, and sulfate-conjugated metabolites. In addition, free GSH is required for MRP1 to transport several chemotherapeutic drugs. However, the mechanisms regulating the influence of GSH on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0268807

    authors: Karwatsky J,Daoud R,Cai J,Gros P,Georges E

    更新日期:2003-03-25 00:00:00

  • Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.

    abstract::15N-labeled hen lysozyme has been studied by 2D and 3D NMR in order to characterize its dynamic behavior. The resonances of all main-chain amide nitrogen atoms were assigned, as were resonances of nitrogen atoms in 28 side chains. Relaxation measurements for the main-chain and arginine and tryptophan side-chain 15N nu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00012a023

    authors: Buck M,Boyd J,Redfield C,MacKenzie DA,Jeenes DJ,Archer DB,Dobson CM

    更新日期:1995-03-28 00:00:00

  • Quantitative measurement of Ca(2+)-dependent calmodulin-target binding by Fura-2 and CFP and YFP FRET imaging in living cells.

    abstract::Calcium dynamics and its linked molecular interactions cause a variety of biological responses; thus, exploiting techniques for detecting both concurrently is essential. Here we describe a method for measuring the cytosolic Ca(2+) concentration ([Ca(2+)](i)) and protein-protein interactions within the same cell, using...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200287x

    authors: Mori MX,Imai Y,Itsuki K,Inoue R

    更新日期:2011-05-31 00:00:00

  • The p73 DNA binding domain displays enhanced stability relative to its homologue, the tumor suppressor p53, and exhibits cooperative DNA binding.

    abstract::The p53 protein family is involved in the control of an intricate network of genes implicated in cell cycle, through to germ line integrity and development. Although the role of p53 is well-established, the intrinsic nature of its homologue p73 has yet to be fully elucidated. Here, the biochemical characterization and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7023207

    authors: Patel S,Bui TT,Drake AF,Fraternali F,Nikolova PV

    更新日期:2008-03-11 00:00:00

  • Pre-steady-state kinetic analysis of enzyme-monitored turnover during cystathionine β-synthase-catalyzed H(2)S generation.

    abstract::Cystathionine β-synthase (CBS) catalyzes the first step in the transsulfuration pathway in mammals, i.e., the condensation of serine and homocysteine to produce cystathionine and water. Recently, we have reported a steady-state kinetic analysis of the three hydrogen sulfide (H(2)S)-generating reactions that are cataly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1010893

    authors: Singh S,Ballou DP,Banerjee R

    更新日期:2011-01-25 00:00:00

  • Three-dimensional structure of the binuclear metal center of phosphotriesterase.

    abstract::Phosphotriesterase, as isolated from Pseudomonas diminuta, is capable of detoxifying widely used pesticides such as paraoxon and parathion and various mammalian acetylcholinesterase inhibitors. The enzyme requires a binuclear metal center for activity. Recently, the three-dimensional structure of the apoenzyme was sol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00025a002

    authors: Benning MM,Kuo JM,Raushel FM,Holden HM

    更新日期:1995-06-27 00:00:00

  • Identification of Asp-130 as the catalytic nucleophile in the main alpha-galactosidase from Phanerochaete chrysosporium, a family 27 glycosyl hydrolase.

    abstract::Characterization of the complete gene sequence encoding the alpha-galactosidase from Phanerochaete chrysosporium confirms that this enzyme is a member of glycosyl hydrolase family 27 [Henrissat, B., and Bairoch, A. (1996) Biochem. J. 316, 695-696]. This family, together with the family 36 alpha-galactosidases, forms g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0008074

    authors: Hart DO,He S,Chany CJ 2nd,Withers SG,Sims PF,Sinnott ML,Brumer H 3rd

    更新日期:2000-08-15 00:00:00

  • Crystal structure of Baeyer-Villiger monooxygenase MtmOIV, the key enzyme of the mithramycin biosynthetic pathway .

    abstract::Baeyer-Villiger monooxygenases (BVMOs), mostly flavoproteins, were shown to be powerful biocatalysts for synthetic organic chemistry applications and were also suggested to play key roles for the biosyntheses of various natural products. Here we present the three-dimensional structure of MtmOIV, a 56 kDa homodimeric F...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8023509

    authors: Beam MP,Bosserman MA,Noinaj N,Wehenkel M,Rohr J

    更新日期:2009-06-02 00:00:00

  • Heterotropic effectors promote a global conformational change in aspartate transcarbamoylase.

    abstract::The sigmoidal dependence of activity on substrate concentration exhibited by the regulatory enzyme aspartate transcarbamoylase (ATCase) of Escherichia coli is generally attributed to a ligand-promoted change in the quaternary structure of the enzyme. Although a global conformational change in ATCase upon the binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00467a019

    authors: Eisenstein E,Markby DW,Schachman HK

    更新日期:1990-04-17 00:00:00