Structure, spectroscopic, and redox properties of Rhodobacter sphaeroides reaction centers bearing point mutations near the primary electron donor.

Abstract:

:Single mutations of three amino acid residues in the vicinity of the primary electron donor, P, in the reaction center (RC) from Rhodobacter (Rb.) sphaeroides were constructed and characterized in order to study the effects of hydrogen-bonding on the physical properties of P. The mutations, Phe M197-->Tyr, Met L248-->Thr, and Ser L244-->Gly, represent single amino acid changes near P designed to introduce residues found in Rhodopseudomonas (Rps.) viridis and to, thus, probe the effects of nonconserved residues. The mutations were designed to change the nonconserved H-bonding interactions of P in Rb. sphaeroides, at the level of a C2 acetyl, a C9 keto, and a C10 ester carbonyl of P, respectively, to those present in Rps. viridis. The Fourier transform (pre)resonance Raman (FTRR) spectra of P, in its reduced and oxidized states, from reaction centers of these mutants were studied to determine modifications of H-bond interactions of the pi-conjugated C2 acetyl and C9 keto carbonyl groups and the C10 carbomethoxy ester carbonyl groups of P. The vibrational spectra of reduced P in the Met L248-->Thr and Ser L244-->Gly mutants reveal no evidence for changes in the H-bonding pattern of P; this suggests that for Rb. sphaeroides wild type, Ser L244 is not H-bonded to the C10 ester carbonyl of PL. The vibrational spectrum of reduced P from the Phe M197-->Tyr mutant compared to that of wild type can unambiguously be interpreted in terms of the formation of a new H-bond with an acetyl carbonyl of P, specifically PM. Correlating with the new H-bond, the Phe M197-->Tyr mutant exhibits an electronic absorption spectrum where the P absorption band is significantly perturbed. Intact cell and chromatophore photobleaching spectra of the same mutant indicate that the P absorption band has red-shifted by ca. 10 nm; no such behavior is observed for the other mutants. As well, the P-->BPheL electron transfer rate does not seem to strongly depend on the H-bonding of the C2 acetyl carbonyl of PM to a tyrosine residue. The EPR zero-field splitting parameters, E and D, of the primary donor triplet are only slightly modified in the mutant reaction centers, on the order of 1%.(ABSTRACT TRUNCATED AT 400 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Wachtveitl J,Farchaus JW,Das R,Lutz M,Robert B,Mattioli TA

doi

10.1021/bi00210a041

subject

Has Abstract

pub_date

1993-11-30 00:00:00

pages

12875-86

issue

47

eissn

0006-2960

issn

1520-4995

journal_volume

32

pub_type

杂志文章
  • Molecular dynamics characterization of five pathogenic Factor X mutants associated with decreased catalytic activity.

    abstract::Factor X (FX) is one of the major players in the blood coagulation cascade. Upon activation to FXa, it converts prothrombin to thrombin, which in turn converts fibrinogen into fibrin (blood clots). FXa deficiency causes hemostasis defects, such as intracranial bleeding, hemathrosis, and gastrointestinal blood loss. He...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500770p

    authors: Abdel-Azeim S,Oliva R,Chermak E,De Cristofaro R,Cavallo L

    更新日期:2014-11-11 00:00:00

  • Sequence effects on the conformational properties of the amyloid beta (1-28) peptide: testing a proposed mechanism for the alpha-->beta transition.

    abstract::Molecular dynamics simulations have been used to successfully reproduce the observed pH-dependent conformational properties of the amyloid beta(1-28) peptide [Kirshenbaum and Daggett (1995) Biochemistry, 34, 7629-7639]. On the basis of these simulations a mechanism was proposed for the unfolding of the N-terminal port...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00023a010

    authors: Kirshenbaum K,Daggett V

    更新日期:1995-06-13 00:00:00

  • A LIN28-dependent structural change in pre-let-7g directly inhibits dicer processing.

    abstract::Several recent studies have provided evidence that LIN28, a cytoplasmic RNA-binding protein, inhibits the biogenesis of members of the let-7 microRNA family at the Dicer step in both mammals and Caenorhabditis elegans. However, the precise mechanism of inhibition is still poorly understood. Here we report on an in vit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200851d

    authors: Lightfoot HL,Bugaut A,Armisen J,Lehrbach NJ,Miska EA,Balasubramanian S

    更新日期:2011-09-06 00:00:00

  • Excitation energy transfer studies on the proximity between SH1 and the adenosinetriphosphatase site in myosin subfragment 1.

    abstract::Excitation energy transfer studies were carried out to determine the distance between the adenosinetriphosphatase (ATPase) site and a unique "fast-reacting" sulfhydryl (referred to as SH1) in myosin subfragment 1. The fluorescent moiety of the probe N-(iodoacetyl)-N'-(5-sulfo-1-naphthyl)ethylene-diamine was used as th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00520a035

    authors: Tao T,Lamkin M

    更新日期:1981-08-18 00:00:00

  • Kinetics of biotinyl-5'-adenylate synthesis catalyzed by the Escherichia coli repressor of biotin biosynthesis and the stability of the enzyme-product complex.

    abstract::The Escherichia coli repressor of biotin biosynthesis is both a biotin ligase and the repressor of transcriptional initiation at the biotin biosynthetic operon. The small molecule, biotinyl-5'-adenylate (bio-5'-AMP), is the intermediate in the biotin ligation reaction and the positive allosteric effector for sequence-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00189a041

    authors: Xu Y,Beckett D

    更新日期:1994-06-14 00:00:00

  • Streptococcus pneumoniae isoprenoid biosynthesis is downregulated by diphosphomevalonate: an antimicrobial target.

    abstract::The toll that Streptococcus pneumoniae exacts on the welfare of humanity is enormous. This organism claims the lives of approximately 3700 people daily, the majority of whom are children below the age of 5, and the situation could worsen due to the increasing incidence of pernicious, multiple-antibiotic-resistant stra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048075t

    authors: Andreassi JL 2nd,Dabovic K,Leyh TS

    更新日期:2004-12-28 00:00:00

  • Identification of Filamin A Mechanobinding Partner I: Smoothelin Specifically Interacts with the Filamin A Mechanosensitive Domain 21.

    abstract::Filamin A (FLNA) is a ubiquitously expressed actin cross-linking protein and a scaffold of numerous binding partners to regulate cell proliferation, migration, and survival. FLNA is a homodimer, and each subunit has an N-terminal actin-binding domain followed by 24 immunoglobulin-like repeats (R). FLNA mediates mechan...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00100

    authors: Wang L,Nakamura F

    更新日期:2019-11-26 00:00:00

  • Sequence-specific solution structure of d-GGTACGCGTACC.

    abstract::Complete resonance assignments of nonexchangeable base protons and sugar protons in d-GGTACGCGTACC at 500 MHz have been obtained by two-dimensional correlated spectroscopy (COSY) and nuclear Overhauser enhancement spectroscopy (NOESY). The characteristic phase-sensitive multiplet patterns of the ntrasugar cross peaks ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a050

    authors: Chary KV,Hosur RV,Govil G,Chen CQ,Miles HT

    更新日期:1988-05-17 00:00:00

  • Down-regulation of hepatic HMG-CoA reductase in mice by dietary cholesterol: importance of the delta 5 double bond and evidence that oxidation at C-3, C-5, C-6, or C-7 is not involved.

    abstract::It has been suggested that the down-regulation of hepatic HMG-CoA reductase by dietary cholesterol requires modification of the cholesterol molecule before it can exert its suppressive action. In a recent study [Lund, E., Breuer, O., & Björkhem, I. (1992) J. Biol. Chem. 267, 25092-25097], we showed that side-chain hyd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00167a038

    authors: Lund E,Björkhem I

    更新日期:1994-01-11 00:00:00

  • Spin equilibrium in human methemoglobin: effects of inositol hexaphosphate and bezafibrate as measured by resonance Raman spectroscopy.

    abstract::The spin equilibria of several derivatives of human methemoglobin were probed by resonance Raman scattering. The intensity of lines in the Raman spectrum gives a measure of the high-spin (S = 5/2) to low-spin (S = 1/2) ratio which agrees well with the spin equilibria determined from direct magnetic susceptibility meas...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00438a056

    authors: Noble RW,DeYoung A,Rousseau DL

    更新日期:1989-06-13 00:00:00

  • Ultrafast water dynamics at the interface of the polymerase-DNA binding complex.

    abstract::DNA polymerases slide on DNA during replication, and the interface must be mobile for various conformational changes. The role of lubricant interfacial water is not understood. In this report, we systematically characterize the water dynamics at the interface and in the active site of a tight binding polymerase (pol β...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500810a

    authors: Yang Y,Qin Y,Ding Q,Bakhtina M,Wang L,Tsai MD,Zhong D

    更新日期:2014-08-26 00:00:00

  • Characterization of human aspartoacylase: the brain enzyme responsible for Canavan disease.

    abstract::Aspartoacylase catalyzes the deacetylation of N-acetylaspartic acid (NAA) to produce acetate and L-aspartate and is the only brain enzyme that has been shown to effectively metabolize NAA. Although the exact role of this enzymatic reaction has not yet been completely elucidated, the metabolism of NAA appears to be nec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052608w

    authors: Le Coq J,An HJ,Lebrilla C,Viola RE

    更新日期:2006-05-09 00:00:00

  • Endogenous Gs-coupled receptors in smooth muscle exhibit differential susceptibility to GRK2/3-mediated desensitization.

    abstract::Although G protein-coupled receptor (GPCR) kinases (GRKs) have been shown to mediate desensitization of numerous GPCRs in studies using cellular expression systems, their function under physiological conditions is less well understood. In the current study, we employed various strategies to assess the effect of inhibi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801056w

    authors: Kong KC,Gandhi U,Martin TJ,Anz CB,Yan H,Misior AM,Pascual RM,Deshpande DA,Penn RB

    更新日期:2008-09-02 00:00:00

  • The three-dimensional structure of the gallium complex of azoverdin, a siderophore of Azomonas macrocytogenes ATCC 12334, determined by NMR using residual dipolar coupling constants.

    abstract::In iron-deficient conditions, Azomonas macrocytogenes ATCC 12334 excretes a fluorescent siderophore called azoverdin, which is composed of a six-amino-acid peptide chain linked to a chromophore. Azoverdin chelates iron(III) very strongly, solubilizing it and transporting it back into the cells using an outer-membrane ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025990a

    authors: Wasielewski E,Atkinson RA,Abdallah MA,Kieffer B

    更新日期:2002-10-15 00:00:00

  • Different binding modes of two flaviolin substrate molecules in cytochrome P450 158A1 (CYP158A1) compared to CYP158A2.

    abstract::Cytochrome P450 158A2 (CYP158A2) has been shown to catalyze an unusual oxidative C-C coupling reaction to polymerize flaviolin and form highly conjugated pigments (three isomers of biflaviolin and one triflaviolin) in Streptomyces coelicolor A3(2) which protect the soil bacterium from deleterious effects of UV irradia...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7006959

    authors: Zhao B,Lamb DC,Lei L,Kelly SL,Yuan H,Hachey DL,Waterman MR

    更新日期:2007-07-31 00:00:00

  • Binding of Ca2+ to the calcium adenosinetriphosphatase of sarcoplasmic reticulum.

    abstract::The binding of Ca2+ and the resulting change in catalytic specificity that allows phosphorylation of the calcium ATPase of sarcoplasmic reticulum by ATP were examined by measuring the amount of phosphoenzyme formation from [32P]ATP, or 45Ca incorporation into vesicles, after the simultaneous addition of ATP and EGTA a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00423a018

    authors: Petithory JR,Jencks WP

    更新日期:1988-11-15 00:00:00

  • Interactions of mycobacterial glycopeptidolipids with membranes: influence of carbohydrate on induced alterations.

    abstract::Glycopeptidolipids (GPLs) are specific constituents of mycobacteria known as opportunistic pathogens. The influence of the carbohydrate moiety on GPL-induced membrane alterations was examined with GPLs bearing 1-5 sugar residues (GPL-1 to GPL-5) and a sulfated GPL (S-GPL-2). GPLs decreased the ADP/O ratio and increase...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00189a006

    authors: Lopez-Marin LM,Quesada D,Lakhdar-Ghazal F,Tocanne JF,Lanéelle G

    更新日期:1994-06-14 00:00:00

  • 8-Azido-ATP modification of cytochrome c: retardation of its electron-transfer activity to cytochrome c oxidase.

    abstract::Horse heart cytochrome c has been modified by 8-azido-ATP and the electron-transfer activity of the modified cytochrome c's to bovine heart cytochrome c oxidase (CcO) under physiological ionic strengths has been studied by the laser flash photolysis technique with 5-deazariboflavin and EDTA as the electron donor. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00008a035

    authors: Lin J,Wu S,Lau WT,Chan SI

    更新日期:1995-02-28 00:00:00

  • Structural and Functional Studies of Bacterial Enolase, a Potential Target against Gram-Negative Pathogens.

    abstract::Enolase is a glycolytic metalloenzyme involved in carbon metabolism. The advantage of targeting enolase lies in its essentiality in many biological processes such as cell wall formation and RNA turnover and as a plasminogen receptor. We initially used a DARTS assay to identify enolase as a target in Escherichia coli. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01298

    authors: Krucinska J,Falcone E,Erlandsen H,Hazeen A,Lombardo MN,Estrada A,Robinson VL,Anderson AC,Wright DL

    更新日期:2019-03-05 00:00:00

  • Role of 2',5'-oligo(adenylic acid) polymerase in the degradation of ribonucleic acid linked to double-stranded ribonucleic acid by extracts of interferon-treated cells.

    abstract::RNA covalently linked to double-stranded RNA (dsRNA) is preferentially degraded in extracts of interferon-treated HeLa cells [Nilsen, T. W., & Baglioni, C. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 2600-2604]. The size of the dsRNA required for this preferential degradation has been determined by annealing poly(I) of k...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00565a018

    authors: Nilsen TW,Weissman SG,Baglioni C

    更新日期:1980-11-25 00:00:00

  • Properties of interacting aspartic acid and lysine residues in the lactose permease of Escherichia coli.

    abstract::The side chains of the interacting pair Asp237(helix VII)-Lys358(helix XI) or Asp240(helix VII)-Lys319(helix X) in the lactose permease of Escherichia coli were extended by replacement with Glu and/or Arg or by site-specific derivatization of single-Cys replacement mutants. Iodoacetic acid was used to carboxymethylate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00089a019

    authors: Sahin-Tóth M,Kaback HR

    更新日期:1993-09-28 00:00:00

  • Evidence for unique homologous peptide sequences around the glycosylated seryl and threonyl residues in polysialoglycoproteins isolated from the unfertilized eggs of the Pacific salmon Oncorhynchus keta.

    abstract::Structures of glycopeptides obtained by exhaustive Pronase digestion of high molecular weight (1.7 X 10(5)) salmon egg polysialoglycoprotein have been elucidated. Six principal glycopeptides isolated by gel chromatography and DEAE-Sephadex A-25 chromatography in the absence or presence of borate ion were analyzed for ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00341a029

    authors: Shimamura M,Inoue Y,Inoue S

    更新日期:1985-09-24 00:00:00

  • Photoreactions of the Histidine Kinase Rhodopsin Ot-HKR from the Marine Picoalga Ostreococcus tauri.

    abstract::The tiny picoalga, Ostreococcus tauri, originating from the Thau Lagoon is a member of the marine phytoplankton. Because of its highly reduced genome and small cell size, while retaining the fundamental requirements of a eukaryotic photosynthetic cell, it became a popular model organism for studying photosynthesis or ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01200

    authors: Luck M,Velázquez Escobar F,Glass K,Sabotke MI,Hagedorn R,Corellou F,Siebert F,Hildebrandt P,Hegemann P

    更新日期:2019-04-09 00:00:00

  • Site-directed mutagenesis of tyrosine-71 to phenylalanine in Citrobacter freundii tyrosine phenol-lyase: evidence for dual roles of tyrosine-71 as a general acid catalyst in the reaction mechanism and in cofactor binding.

    abstract::Tyr71 is an invariant residue in all known sequences of tyrosine phenol-lyase (TPL). The substitution of Tyr71 in TPL by phenylalanine results in a mutant Y71F TPL with no detectable activity (greater than 3 x 10(5)-fold reduction) for beta-elimination of L-tyrosine. Y71F TPL can react with S-alkylcysteines, but these...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00038a023

    authors: Chen HY,Demidkina TV,Phillips RS

    更新日期:1995-09-26 00:00:00

  • Isoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes.

    abstract::Information on the secondary structure and interactions of RNA is important to understand the biological function of RNA as well as in applying RNA as a tool for therapeutic purposes. Recently, the isoenergetic microarray mapping method was developed to improve the prediction of RNA secondary structure. Herein, for th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200463p

    authors: Fratczak A,Kierzek R,Kierzek E

    更新日期:2011-09-06 00:00:00

  • Distinct activation states of alpha5beta1 integrin show differential binding to RGD and synergy domains of fibronectin.

    abstract::alpha5beta1 integrin can occupy several distinct conformational states which support different strengths of binding to fibronectin [García, A. J., et al. (1998) J. Biol. Chem. 273, 34710-34715]. Using a model system in which specific activating monoclonal antibodies were used to achieve uniform activated states, the b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025752f

    authors: García AJ,Schwarzbauer JE,Boettiger D

    更新日期:2002-07-23 00:00:00

  • Low molecular weight protein tyrosine phosphatase and caveolin-1: interaction and isoenzyme-dependent regulation.

    abstract::Low molecular weight protein tyrosine phosphatases (LMW-PTPs) are small enzymes that are ubiquitous in many organisms. They are important in biological processes such as cell proliferation, adhesion, migration, and invasiveness. LMW-PTP is expressed in mammalian cells as two isoforms (IF1 and IF2) originating through ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0620858

    authors: Caselli A,Taddei ML,Bini C,Paoli P,Camici G,Manao G,Cirri P,Ramponi G

    更新日期:2007-05-29 00:00:00

  • CHOBIMALT: a cholesterol-based detergent.

    abstract::Cholesterol and its hemisuccinate and sulfate derivatives are widely used in studies of purified membrane proteins but are difficult to solubilize in aqueous solution, even in the presence of detergent micelles. Other cholesterol derivatives do not form conventional micelles and lead to viscous solutions. To address t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101334j

    authors: Howell SC,Mittal R,Huang L,Travis B,Breyer RM,Sanders CR

    更新日期:2010-11-09 00:00:00

  • Heterocycle formation in vibriobactin biosynthesis: alternative substrate utilization and identification of a condensed intermediate.

    abstract::The iron-chelating peptide vibriobactin of the pathogenic Vibrio cholerae is assembled by a four-subunit nonribosomal peptide synthetase complex, VibE, VibB, VibH, and VibF, using 2,3-dihydroxybenzoate and L-threonine as precursors to two 2,3-dihydroxyphenyl- (DHP-) methyloxazolinyl groups in amide linkage on a norspe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010937s

    authors: Marshall CG,Burkart MD,Keating TA,Walsh CT

    更新日期:2001-09-04 00:00:00

  • Interaction between the Rev1 C-Terminal Domain and the PolD3 Subunit of Polζ Suggests a Mechanism of Polymerase Exchange upon Rev1/Polζ-Dependent Translesion Synthesis.

    abstract::Translesion synthesis (TLS) is a mutagenic branch of cellular DNA damage tolerance that enables bypass replication over DNA lesions carried out by specialized low-fidelity DNA polymerases. The replicative bypass of most types of DNA damage is performed in a two-step process of Rev1/Polζ-dependent TLS. In the first ste...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01282

    authors: Pustovalova Y,Magalhães MT,D'Souza S,Rizzo AA,Korza G,Walker GC,Korzhnev DM

    更新日期:2016-04-05 00:00:00