8-Azido-ATP modification of cytochrome c: retardation of its electron-transfer activity to cytochrome c oxidase.

Abstract:

:Horse heart cytochrome c has been modified by 8-azido-ATP and the electron-transfer activity of the modified cytochrome c's to bovine heart cytochrome c oxidase (CcO) under physiological ionic strengths has been studied by the laser flash photolysis technique with 5-deazariboflavin and EDTA as the electron donor. The intermolecular electron transfer between the redox protein partners was shown to be extremely slow. The 8-azido-ATP-modified system exhibited less than 5% of the intracomplex electron-transfer rate observed between native cytochrome c and CcO under otherwise identical conditions. The binding affinity of the modified cytochrome c was greatly reduced (3 orders of magnitude) at low ionic strengths; however, it was only slightly reduced (by a factor of 2) relative to the native protein at physiological ionic strengths. Thus, the binding affinity of the ATP-cytochrome c adducts is relatively insensitive to the ionic strength compared to the native enzyme, suggesting that a different docking conformation is assumed by the ATP-cytochrome c adducts in their interaction with the oxidase. Since the redox potential of the modified cytochrome c is close to the value of its native form, we conclude that there has been a change in the docking of the cytochrome c to CcO and the electronic coupling between heme c and CuA upon 8-azido-ATP modification.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Lin J,Wu S,Lau WT,Chan SI

doi

10.1021/bi00008a035

subject

Has Abstract

pub_date

1995-02-28 00:00:00

pages

2678-85

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

34

pub_type

杂志文章
  • Self-assembly of aqueous bilirubin ditaurate, a natural conjugated bile pigment, to contraposing enantiomeric dimers and M(-) and P(+) tetramers and their selective hydrophilic disaggregation by monomers and micelles of bile salts.

    abstract::The solution behavior of bilirubin ditaurate (BDT), the first naturally occurring conjugated bile pigment to be physically and chemically characterized, was assessed in aqueous solution and in monomeric and micellar solutions of common taurine-conjugated bile salts (BS). Analytical ultracentrifugation revealed that BD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501251v

    authors: Neubrand MW,Carey MC,Laue TM

    更新日期:2015-02-24 00:00:00

  • Membrane curvature, lipid segregation, and structural transitions for phospholipids under dual-solvent stress.

    abstract::Amphiphiles respond both to polar and to nonpolar solvents. In this paper X-ray diffraction and osmotic stress have been used to examine the phase behavior, the structural dimensions, and the work of deforming the monolayer-lined aqueous cavities formed by mixtures of dioleoylphosphatidylethanolamine (DOPE) and dioleo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00453a010

    authors: Rand RP,Fuller NL,Gruner SM,Parsegian VA

    更新日期:1990-01-09 00:00:00

  • Chromatin assembly factor 1 interacts with histone H3 methylated at lysine 79 in the processes of epigenetic silencing and DNA repair.

    abstract::In eukaryotic cells, chromatin is classified into euchromatin, which is active in transcription, and heterochromatin that silences transcription. Histones in these two domains contain distinct modifications. Chromatin assembly factor 1 (CAF-1) is a highly conserved protein that functions in DNA replication, DNA repair...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0521083

    authors: Zhou H,Madden BJ,Muddiman DC,Zhang Z

    更新日期:2006-03-07 00:00:00

  • Escherichia coli aromatic amino acid aminotransferase: characterization and comparison with aspartate aminotransferase.

    abstract::Aromatic amino acid aminotransferase (ArAT) from Escherichia coli was overexpressed in E. coli cells, purified, and characterized. The enzyme was similar to aspartate aminotransferase (AspAT) of E. coli in many aspects, such as gross protein structure and spectroscopic properties. The reactions of pyridoxal 5'-phospha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00096a036

    authors: Hayashi H,Inoue K,Nagata T,Kuramitsu S,Kagamiyama H

    更新日期:1993-11-16 00:00:00

  • Analysis of the ligand binding site in Fas (CD95) by site-directed mutagenesis and comparison with TNFR and CD40.

    abstract::Fas and its ligand (FasL) are members of the tumor necrosis factor receptor (TNFR) and tumor necrosis factor (TNF) superfamilies, respectively. Fas-FasL interactions trigger controlled cell death (apoptosis) in the immune system and thus play a key role in the regulation of immune responses. Structural details of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972959d

    authors: Starling GC,Kiener PA,Aruffo A,Bajorath J

    更新日期:1998-03-17 00:00:00

  • Mitochondrial NADH-ubiquinone reductase: complementary DNA sequences of import precursors of the bovine and human 24-kDa subunit.

    abstract::The 24-kDa subunit of mitochondrial NADH-ubiquinone reductase (complex I) is an iron-sulfur protein that is present in the flavoprotein or NADH dehydrogenase II subcomplex. It is a nuclear gene product and is imported into the organelle. A group of human patients with mitochondrial myopathy have been shown to have red...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a021

    authors: Pilkington SJ,Walker JE

    更新日期:1989-04-18 00:00:00

  • Escherichia coli phosphoenolpyruvate dependent phosphotransferase system. Copurification of HPr and alpha 1-6 glucan.

    abstract::A rapid, high-yield procedure has been developed for the purification of HPr from the Escherichia coli phosphoenolpyruvate dependent phosphotransferase system. During this procedure, the protein copurifies with a 2500-dalton homopolysaccharide which we have identified as alpha 1-6 glucan. The results of steady-state k...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00581a013

    authors: Dooijewaard G,Roossien FF,Robillard GT

    更新日期:1979-07-10 00:00:00

  • Role of the K-channel in the pH-dependence of the reaction of cytochrome c oxidase with hydrogen peroxide.

    abstract::The reaction of cytochrome c oxidase (COX) from Rhodobacter sphaeroides with hydrogen peroxide has been studied at alkaline (pH 8.5) and acidic (pH 6.5) conditions with the aid of a stopped-flow apparatus. Absorption changes in the entire 350-800 nm spectral range were monitored and analyzed by a global fitting proced...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010115v

    authors: Pecoraro C,Gennis RB,Vygodina TV,Konstantinov AA

    更新日期:2001-08-14 00:00:00

  • Increased β-Sheet Dynamics and D-E Loop Repositioning Are Necessary for Cu(II)-Induced Amyloid Formation by β-2-Microglobulin.

    abstract::β-2-Microglobulin (β2m) forms amyloid fibrils in the joints of patients undergoing dialysis treatment as a result of kidney failure. One of the ways in which β2m can be induced to form amyloid fibrils in vitro is via incubation with stoichiometric amounts of Cu(II). To better understand the structural changes caused b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01198

    authors: Borotto NB,Zhang Z,Dong J,Burant B,Vachet RW

    更新日期:2017-02-28 00:00:00

  • Engineering the zinc binding site of human carbonic anhydrase II: structure of the His-94-->Cys apoenzyme in a new crystalline form.

    abstract::The structure of the His-94-->Cys variant of human carbonic anhydrase II (CAII) has been determined by X-ray crystallographic methods to a resolution of 2.3 A with a final crystallographic R factor of 0.155. This variant of CAII crystallizes in orthorhombic space group P2(1)2(1)2(1) which is the first example of a new...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00057a015

    authors: Alexander RS,Kiefer LL,Fierke CA,Christianson DW

    更新日期:1993-02-16 00:00:00

  • Directed evolution of a quorum-quenching lactonase from Mycobacterium avium subsp. paratuberculosis K-10 in the amidohydrolase superfamily.

    abstract::The PLL(PTE-like lactonase)-group of enzymes within the amidohydrolase superfamily hydrolyze N-acyl-homoserine lactones (AHLs) that are involved in bacterial quorum-sensing pathways. These enzymes possess the (beta/alpha)(8)-barrel fold and serve as attractive templates for in vitro evolution and engineering of quorum...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9004045

    authors: Chow JY,Wu L,Yew WS

    更新日期:2009-05-26 00:00:00

  • Luminal pH regulated calcium release kinetics in sarcoplasmic reticulum vesicles.

    abstract::Calcium binding to triads isolated from rabbit skeletal muscle followed a single hyperbolic function in the pH range 5.5-8.0. Maximal binding was obtained at pH 8.0; decreasing the pH decreased the binding capacity and, at pH < or = 6.0, increased Kd 2-fold. These results indicate that lowering the pH diminished calci...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9616209

    authors: Donoso P,Beltrán M,Hidalgo C

    更新日期:1996-10-15 00:00:00

  • Substrate specificity of the heparan sulfate hexuronic acid 2-O-sulfotransferase.

    abstract::The interaction of heparan sulfate with different ligand proteins depends on the precise location of O-sulfate groups in the polysaccharide chain. We have previously shown that overexpression in human kidney 293 cells of a mouse mastocytoma 2-O-sulfotransferase (2-OST), previously thought to catalyze the transfer of s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002926p

    authors: Rong J,Habuchi H,Kimata K,Lindahl U,Kusche-Gullberg M

    更新日期:2001-05-08 00:00:00

  • Three-dimensional structure of toxin OSK1 from Orthochirus scrobiculosus scorpion venom.

    abstract::A 600 MHz 1H NMR study of toxin OSK1, blocker of small-conductance Ca2+-activated K+ channels, is presented. The unambiguous sequential assignment of all the protons of the toxin was obtained using TOCSY, DQF-COSY, and NOESY experiments at pH 3.0 (10, 30, and 45 degrees C) in aqueous solution. 3J(N alpha), 3J(alphabet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9614390

    authors: Jaravine VA,Nolde DE,Reibarkh MJ,Korolkova YV,Kozlov SA,Pluzhnikov KA,Grishin EV,Arseniev AS

    更新日期:1997-02-11 00:00:00

  • Chiral sulfoxidations catalyzed by rat liver cytochromes P-450.

    abstract::The chirality of sulfoxidation catalyzed by two cytochrome P-450 isozymes purified from phenobarbital-induced rat liver was studied by using 4-tolyl ethyl sulfide as a substrate. Both P-450 isoenzymes, termed PB-1 and PB-4, when reconstituted with purified rat liver NADPH-cytochrome P-450 reductase and cytochrome b5, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00539a032

    authors: Waxman DJ,Light DR,Walsh C

    更新日期:1982-05-11 00:00:00

  • Crystallographic and kinetic studies of human mitochondrial acetoacetyl-CoA thiolase: the importance of potassium and chloride ions for its structure and function.

    abstract::Thiolases are CoA-dependent enzymes which catalyze the formation of a carbon-carbon bond in a Claisen condensation step and its reverse reaction via a thiolytic degradation mechanism. Mitochondrial acetoacetyl-coenzyme A (CoA) thiolase (T2) is important in the pathways for the synthesis and degradation of ketone bodie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi6026192

    authors: Haapalainen AM,Meriläinen G,Pirilä PL,Kondo N,Fukao T,Wierenga RK

    更新日期:2007-04-10 00:00:00

  • Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin.

    abstract::Purple membranes (PM) from Halobacterium halobium were incorporated into 7.5% polyacrylamide gels to prevent aggregation which occurs in suspensions at low pH. At pH 7.0, the circular dichroism (CD) spectra and visible absorption spectra of light- and dark-adapted bacteriorhodopsin (bR558, respectively) and the flash ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00586a007

    authors: Mowery PC,Lozier RH,Chae Q,Tseng YW,Taylor M,Stoeckenius W

    更新日期:1979-09-18 00:00:00

  • Characterization of interactions between a two-component response regulator, Spo0F, and its phosphatase, RapB.

    abstract::The phosphorelay signal transduction pathway controls sporulation initiation in Bacillus subtilis. Transfer of a phosphoryl group from multiple kinases (KinA and KinB) through a single domain response regulator homologue (Spo0F), a phosphotransferase (Spo0B), and ultimately to a transcriptional regulator, (Spo0A) acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981340o

    authors: Tzeng YL,Feher VA,Cavanagh J,Perego M,Hoch JA

    更新日期:1998-11-24 00:00:00

  • Interaction of S100A1 with the Ca2+ release channel (ryanodine receptor) of skeletal muscle.

    abstract::In the present report we studied the interaction between the skeletal muscle ryanodine receptor and the ubiquitous S100A1 Ca2+ binding protein. S100A1 did not affect equilibrium [3H]ryanodine binding to purified rabbit skeletal muscle terminal cisternae at 100 microM free [Ca2+]. At nanomolar free [Ca2+], however, S10...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970160w

    authors: Treves S,Scutari E,Robert M,Groh S,Ottolia M,Prestipino G,Ronjat M,Zorzato F

    更新日期:1997-09-23 00:00:00

  • Binding of T4 endonuclease V to deoxyribonucleic acid irradiated with ultraviolet light.

    abstract::Endonuclease V of bacteriophage T4 binds to UV-irradiated deoxyribonucleic acid (DNA) but not to unirradiated DNA. We have developed an assay to detect this binding, based on the retention of enzyme--DNA complexes on nitrocellulose filters. The amount of complex retained, ascertained by using radioactive DNA, is a mea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00549a026

    authors: Seawell PC,Simon TJ,Ganesan AK

    更新日期:1980-04-15 00:00:00

  • Plasmin substrate binding site cooperativity guides the design of potent peptide aldehyde inhibitors.

    abstract::Perioperative bleeding is a cause of major blood loss and is associated with increased rates of postoperative morbidity and mortality. To combat this, antifibrinolytic inhibitors of the serine protease plasmin are commonly used to reduce bleeding during surgery. The most effective and previously widely used of these i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201203y

    authors: Swedberg JE,Harris JM

    更新日期:2011-10-04 00:00:00

  • Tryptophan residues flanking the second transmembrane helix (TM2) set the signaling state of the Tar chemoreceptor.

    abstract::The chemoreceptors of Escherichia coli are homodimeric membrane proteins that cluster in patches near the cell poles. They convert environmental stimuli into intracellular signals that control flagellar rotation. The functional domains of a receptor are physically separated by the cell membrane. Chemoeffectors bind to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048969d

    authors: Draheim RR,Bormans AF,Lai RZ,Manson MD

    更新日期:2005-02-01 00:00:00

  • Pyruvate dehydrogenase kinase isoform 2 activity limited and further inhibited by slowing down the rate of dissociation of ADP.

    abstract::Pyruvate dehydrogenase kinase 2 (PDK2) activity is enhanced by the dihydrolipoyl acetyltransferase core (E2 60mer) that binds PDK2 and a large number of its pyruvate dehydrogenase (E1) substrate. With E2-activated PDK2, K(+) at approximately 90 mM and Cl(-) at approximately 60 mM decreased the K(m) of PDK2 for ATP and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049488x

    authors: Bao H,Kasten SA,Yan X,Roche TE

    更新日期:2004-10-26 00:00:00

  • Noncompetitive inhibition of indolethylamine-N-methyltransferase by N,N-dimethyltryptamine and N,N-dimethylaminopropyltryptamine.

    abstract::Indolethylamine-N-methyltransferase (INMT) is a Class 1 transmethylation enzyme known for its production of N,N-dimethyltryptamine (DMT), a hallucinogen with affinity for various serotonergic, adrenergic, histaminergic, dopaminergic, and sigma-1 receptors. DMT is produced via the action of INMT on the endogenous subst...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500175p

    authors: Chu UB,Vorperian SK,Satyshur K,Eickstaedt K,Cozzi NV,Mavlyutov T,Hajipour AR,Ruoho AE

    更新日期:2014-05-13 00:00:00

  • Proposed mechanism for the condensation reaction of citrate synthase: 1.9-A structure of the ternary complex with oxaloacetate and carboxymethyl coenzyme A.

    abstract::The crystal structure of the ternary complex citrate synthase-oxaloacetate-carboxymethyl coenzyme A has been solved to a resolution of 1.9 A and refined to a conventional crystallographic R factor of 0.185. The structure resembles a proposed transition state of the condensation reaction and suggests that the condensat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:

    authors: Karpusas M,Branchaud B,Remington SJ

    更新日期:1990-03-06 00:00:00

  • N-218 MLN64, a protein with StAR-like steroidogenic activity, is folded and cleaved similarly to StAR.

    abstract::The steroidogenic acute regulatory protein (StAR) facilitates the movement of cholesterol from the outer to inner mitochondrial membrane in adrenal and gonadal cells, fostering steroid biosynthesis. MLN64 is a 445-amino acid protein of unknown function. When 218 amino-terminal residues of MLN-64 are deleted, the resul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000911l

    authors: Bose HS,Whittal RM,Huang MC,Baldwin MA,Miller WL

    更新日期:2000-09-26 00:00:00

  • Conserved rhodopsin intradiscal structural motifs mediate stabilization: effects of zinc.

    abstract::Retinitis pigmentosa (RP), a neurodegenerative disorder, can arise from single point mutations in rhodopsin, leading to a cascade of protein instability, misfolding, aggregation, rod cell death, retinal degeneration, and ultimately blindness. Divalent cations, such as zinc and copper, have allosteric effects on misfol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800968w

    authors: Gleim S,Stojanovic A,Arehart E,Byington D,Hwa J

    更新日期:2009-03-03 00:00:00

  • Comparison of NMR solution structures of the receptor binding domains of Pseudomonas aeruginosa pili strains PAO, KB7, and PAK: implications for receptor binding and synthetic vaccine design.

    abstract::The solution structures of peptide antigens from the receptor binding domains of Pseudomonas aeruginosa strains PAO and KB7 have been determined using two-dimensional 1H NMR techniques. Ensembles of solution conformations for the trans forms of these 17-residue disulfide-bridged peptides have been generated using a si...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00050a005

    authors: Campbell AP,McInnes C,Hodges RS,Sykes BD

    更新日期:1995-12-19 00:00:00

  • Structures of the Klebsiella aerogenes urease apoenzyme and two active-site mutants.

    abstract::Urease from Klebsiella aerogenes [Jabri et al. (1995) Science 268, 998-1004] is an (alpha beta gamma)3 trimer with each alpha-subunit having an (alpha beta)8-barrel domain containing a binickel active center. Here we examine structure-function relations for urease in more detail through structural analysis of the urea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960424z

    authors: Jabri E,Karplus PA

    更新日期:1996-08-20 00:00:00

  • Fate of the (2Fe-2S)(2+) cluster of Escherichia coli biotin synthase during reaction: a Mössbauer characterization.

    abstract::Biotin synthase, the enzyme which catalyzes the last step of the biosynthesis of biotin, contains only (2Fe-2S)(2+) clusters when isolated under aerobic conditions. Previous results showed that reduction by dithionite or photoreduced deazaflavin converts the (2Fe-2S)(2+) to (4Fe-4S)(2+,+). However, until now, no detai...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034426c

    authors: Tse Sum Bui B,Benda R,Schünemann V,Florentin D,Trautwein AX,Marquet A

    更新日期:2003-07-29 00:00:00