Complete genome sequence of Enterobacter cloacae GGT036: a furfural tolerant soil bacterium.

Abstract:

:Enterobacter cloacae is a facultative anaerobic bacterium to be an important cause of nosocomial infection. However, the isolated E. cloacae GGT036 showed higher furfural-tolerant cellular growth, compared to industrial relevant strains such as Escherichia coli and Corynebacterium glutamicum. Here, we report the complete genome sequence of E. cloacae GGT036 isolated from Mt. Gwanak, Seoul, Republic of Korea. The genomic DNA sequence of E. cloacae GGT036 will provide valuable genetic resources for engineering of industrially relevant strains being tolerant to cellular inhibitors present in lignocellulosic hydrolysates.

journal_name

J Biotechnol

journal_title

Journal of biotechnology

authors

Gong G,Um Y,Park TH,Woo HM

doi

10.1016/j.jbiotec.2014.11.012

subject

Has Abstract

pub_date

2015-01-10 00:00:00

pages

43-4

eissn

0168-1656

issn

1873-4863

pii

S0168-1656(14)00988-2

journal_volume

193

pub_type

杂志文章
  • Use of ars18 based vectors to increase protein production in Yarrowia lipolytica.

    abstract::The isolation of ars sequence from the yeast Yarrowia lipolytica has recently been reported (Fournier et al., 1991). Vectors containing ars18 have been used to increase homologous and heterologous protein production. Examples presented are the Yarrowia lipolytica alkaline extracellular protease (AEP), the porcine alph...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(91)90063-2

    authors: Nicaud JM,Fournier P,La Bonnardière C,Chasles M,Gaillardin C

    更新日期:1991-07-01 00:00:00

  • Advanced genetic strategies for recombinant protein expression in Escherichia coli.

    abstract::Preparations enriched by a specific protein are rarely easily obtained from natural host cells. Hence, recombinant protein production is frequently the sole applicable procedure. The ribosomal machinery, located in the cytoplasm is an outstanding catalyst of recombinant protein biosynthesis. Escherichia coli facilitat...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jbiotec.2004.08.004

    authors: Sørensen HP,Mortensen KK

    更新日期:2005-01-26 00:00:00

  • Comparative analysis of amino acid metabolism and transport in CHO variants with different levels of productivity.

    abstract::Chinese hamster ovary (CHO) cells are widely used for the production of biopharmaceuticals; however, our understanding of several physiological elements that contribute to productivity is limited. One of these is amino acid transport and how its limitation and/or regulation might affect productivity. To further our un...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2013.09.007

    authors: Kyriakopoulos S,Polizzi KM,Kontoravdi C

    更新日期:2013-12-01 00:00:00

  • Improved activity and thermostability of Bacillus pumilus lipase by directed evolution.

    abstract::To improve enzymatic activity of Bacillus pumilus lipases, DNA shuffling was applied to two lipase genes from local B. pumilus isolates. Using a high-throughput activity assay, the mutant with highest activity was selected. This chimeric mutant (L3-3), carrying two crossover positions and three point mutations, has a ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2012.12.016

    authors: Akbulut N,Tuzlakoğlu Öztürk M,Pijning T,İşsever Öztürk S,Gümüşel F

    更新日期:2013-03-10 00:00:00

  • New N-acyl-D-glucosamine 2-epimerases from cyanobacteria with high activity in the absence of ATP and low inhibition by pyruvate.

    abstract::N-Acetylneuraminic acid, an important component of glycoconjugates with various biological functions, can be produced from N-acetyl-D-glucosamine (GlcNAc) and pyruvate using a one-pot, two-enzyme system consisting of N-acyl-D-glucosamine 2-epimerase (AGE) and N-acetylneuraminate lyase (NAL). In this system, the epimer...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2013.07.003

    authors: Klermund L,Groher A,Castiglione K

    更新日期:2013-11-01 00:00:00

  • Antibiotic resistance in Pseudomonas aeruginosa biofilms: towards the development of novel anti-biofilm therapies.

    abstract::The growth of bacteria as structured aggregates termed biofilms leads to their protection from harsh environmental conditions such as physical and chemical stresses, shearing forces, and limited nutrient availability. Because of this highly adapted ability to survive adverse environmental conditions, bacterial biofilm...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jbiotec.2014.09.003

    authors: Taylor PK,Yeung AT,Hancock RE

    更新日期:2014-12-10 00:00:00

  • Expression of human parathyroid hormone in mammalian cells, Escherichia coli and Saccharomyces cerevisiae.

    abstract::The entire human parathyroid hormone (hPTH) cDNA gene with its natural signal and pro-region is expressed in transfected mouse mammary tumor cells (C127I cells) and Chinese hamster lung cells (DON cells) under control of the murine metallothioneine-1 promoter in a vector in which replication functions are provided by ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(94)90077-9

    authors: Rokkones E,Kareem BN,Olstad OK,Høgset A,Schenstrøm K,Hansson L,Gautvik KM

    更新日期:1994-04-15 00:00:00

  • Synthesis, characterization of penicillin G capped silver nanoconjugates to combat β-lactamase resistance in infectious microorganism.

    abstract::In the present study, a novel strategy was adopted to synthesize, β lactamase resistant penicillin G molecules by using the unique properties of silver nanoparticles. Ascorbic acid-stabilized spherical monodispersed silver nanoparticles were prepared by a simple chemical reaction. The formation processes of the silver...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2012.12.002

    authors: Ahmed V,Kumar J,Kumar M,Chauhan MB,Vij M,Ganguli M,Chauhan NS

    更新日期:2013-02-20 00:00:00

  • Mutants of listeriolysin O for enhanced liposomal delivery of macromolecules.

    abstract::Delivery of macromolecules into the cytosolic space of eukaryotic cells is a pressing challenge in biopharmaceutics. Macromolecules are often encapsulated into liposomes for protection and improved distribution, but the their size often induces endocytosis of the vehicle at the target site, leading to degradation of t...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2013.01.029

    authors: Walls ZF,Goodell S,Andrews CD,Mathis J,Lee KD

    更新日期:2013-04-15 00:00:00

  • Production of single chain fragment variable (scFv) antibodies in Escherichia coli using the LEX™ bioreactor.

    abstract::For proteome research, antibodies against a growing number of antigens must be generated and characterized. The high throughput generation of antibody fragments, using in vitro selection, requires bacterial expression of antibody fragments. This created a need to establish an expression method to improve the parallel ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2012.07.011

    authors: Miethe S,Meyer T,Wöhl-Bruhn S,Frenzel A,Schirrmann T,Dübel S,Hust M

    更新日期:2013-01-20 00:00:00

  • Cultivation of high-rate sulfate reducing sludge by pH-based electron donor dosage.

    abstract::A novel self-regulating bioreactor concept for sulfate reduction is proposed aiming for high biomass concentrations and treatment capacities. The system consists of a cell suspension of sulfate reducing bacteria in a continuous stirred tank reactor (30 degrees C) fed with a mixture of both electron donor and electron ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.03.007

    authors: Paulo PL,Kleerebezem R,Lettinga G,Lens PN

    更新日期:2005-07-21 00:00:00

  • Microbiome response to controlled shifts in ammonium and LCFA levels in co-digestion systems.

    abstract::Anaerobic co-digestion using protein-rich and lipid-rich co-substrates is limited by the accumulation of ammonia and long chain fatty acids (LCFAs), which are important inhibitors of the anaerobic microorganisms. This work aimed to study the microbial community dynamics during gradual and abrupt increase in ammonium a...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.01.006

    authors: Regueiro L,Carballa M,Lema JM

    更新日期:2016-02-20 00:00:00

  • Markerless genome editing in Clostridium beijerinckii using the CRISPR-Cpf1 system.

    abstract::CRISPR-Cpf1 is a type V CRISPR system that has recently been exploited for genome engineering purposes. Compared to the well-known Streptococcus pyogenes CRISPR-Cas9 system, the effector protein Cpf1 recognizes T-rich protospacer-adjacent motif (PAM) instead of G-rich PAM (used by CRISPR-Cas9), which could offer a sub...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2018.07.040

    authors: Zhang J,Hong W,Zong W,Wang P,Wang Y

    更新日期:2018-10-20 00:00:00

  • Improving expansion of pluripotent human embryonic stem cells in perfused bioreactors through oxygen control.

    abstract::The successful transfer of human embryonic stem cell (hESC) technology and cellular products into clinical and industrial applications needs to address issues of automation, standardization and the generation of relevant cell numbers of high quality. In this study, we combined microcarrier technology and controlled st...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2010.06.015

    authors: Serra M,Brito C,Sousa MF,Jensen J,Tostões R,Clemente J,Strehl R,Hyllner J,Carrondo MJ,Alves PM

    更新日期:2010-08-02 00:00:00

  • Hydroperoxide-lyase activity in mint leaves. Volatile C6-aldehyde production from hydroperoxy-fatty acids.

    abstract::The extraction of 13-hydroperoxide-lyase activity from mint leaves as well as its use for C6-aldehyde production was studied in this work. The enzyme cleaves 13(S)-hydroperoxy-C18 fatty acids into C6-aldehyde and C12-oxo-acid. Two mint species were tested: Mentha veridis and Mentha pulegium. The headspace injection me...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2004.03.005

    authors: Gargouri M,Drouet P,Legoy MD

    更新日期:2004-07-01 00:00:00

  • VEGF profiling and angiogenesis in human microtissues.

    abstract::Owing to its dual impact on tissue engineering (neovascularization of tissue implants) and cancer treatment (prevention of tumor-induced vascularization), management and elucidation of vascularization phenomena remain clinical priorities. Using a variety of primary human cells and (neoplastic) cell lines assembled in ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.03.016

    authors: Kelm JM,Diaz Sanchez-Bustamante C,Ehler E,Hoerstrup SP,Djonov V,Ittner L,Fussenegger M

    更新日期:2005-08-04 00:00:00

  • Insertion kinetics of small nucleotides through single walled carbon nanotube.

    abstract::We report molecular dynamic simulations showing that a DNA molecule constituted by five unique bases can be spontaneously inserted into single walled carbon nanotube (SWCNT) in normal conditions (P, T and water environment) depending on the tube radius value. The van der Waals and electrostatic interactions play a cen...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2012.12.008

    authors: Clavier A,Kraszewski S,Ramseyer C,Picaud F

    更新日期:2013-03-10 00:00:00

  • Cloning and functional expression of glucose dehydrogenase complex of Burkholderia cepacia in Escherichia coli.

    abstract::The thermostable glucose dehydrogenase (GDH) from Burkholderia cepacia sp. SM4 is composed of a catalytic subunit (alpha), an electron transfer subunit (beta), and a small gamma subunit of unknown function. We cloned a 1428-nucleotide gene encoding the beta subunit located immediately downstream of the alpha subunit. ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.10.017

    authors: Tsuya T,Ferri S,Fujikawa M,Yamaoka H,Sode K

    更新日期:2006-05-17 00:00:00

  • Analysis of reduction of Geobacillus stearothermophilus spores treated with high hydrostatic pressure and mild heat in milk buffer.

    abstract::Our unpublished experimental results of fractional factorial experiments showed that the significant external factors affecting high pressure processing (HPP) inactivation were pressure, temperature and pressure holding time. Based on these results, response surface methodology (RSM) was employed in the present work a...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2006.03.004

    authors: Gao YL,Ju XR,Jiang HH

    更新日期:2006-09-18 00:00:00

  • A flow cytometric study of hydrodynamic damage to mammalian cells.

    abstract::Flow cytometry has been used to study the mechanisms of damage to mammalian cells by hydrodynamic forces. Cell damage resulted from the stresses created both by bubble entrainment and by bubble bursting caused by vortex formation in highly agitated culture. Damage to the antigen molecules on the cell surface together ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(93)90158-j

    authors: al-Rubeai M,Emery AN,Chalder S,Goldman MH

    更新日期:1993-11-01 00:00:00

  • Development of a high-throughput method to evaluate the impact of inhibitory compounds from lignocellulosic hydrolysates on the growth of Zymomonas mobilis.

    abstract::Overcoming the effects of hydrolysate toxicity towards ethanologens is a key technical barrier in the biochemical conversion process for biomass feedstocks to ethanol. Despite its importance, the complexity of the hydrolysate toxicity phenomena and the lack of systematic studies, analysis and tools surrounding this is...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2009.08.006

    authors: Franden MA,Pienkos PT,Zhang M

    更新日期:2009-12-01 00:00:00

  • MinION as part of a biomedical rapidly deployable laboratory.

    abstract::Fast turnaround times are of utmost importance for biomedical reconnaissance, particularly regarding dangerous pathogens. Recent advances in sequencing technology and its devices allow sequencing within a short time frame outside stationary laboratories close to the epicenter of the outbreak. In our study, we evaluate...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.12.006

    authors: Walter MC,Zwirglmaier K,Vette P,Holowachuk SA,Stoecker K,Genzel GH,Antwerpen MH

    更新日期:2017-05-20 00:00:00

  • Characterization of cell population growth by cell cycle parameters.

    abstract::The quantitative description of the relationships between global properties, defined at the cellular population level, and individual properties, defined at the single cell level, is considered in this communication along with the analysis of some segregated models of yeast and hybridoma cell cultures. ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(99)00028-0

    authors: Cazzador L

    更新日期:1999-05-28 00:00:00

  • Comparative characterization of a recombinant Volvariella volvacea endoglucanase I (EG1) with its truncated catalytic core (EG1-CM), and their impact on the bio-treatment of cellulose-based fabrics.

    abstract::Recombinant Volvariella volvacea endoglucanase 1 (EG1) and its catalytic module (EG1-CM) were obtained by expression in Pichia pastoris, purified by two-step chromatography, and the catalytic activities and binding capacities were compared. EG1 and EG1-CM exhibited very similar specific activities towards the soluble ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2007.05.016

    authors: Wu S,Ding S,Zhou R,Li Z

    更新日期:2007-07-15 00:00:00

  • Enhanced production of β-glucosides by in-situ UDP-glucose regeneration.

    abstract::Glycosyltransferase (GT)-mediated methodology is recognized as one of the most practical approaches for large-scale production of glycosides. However, GT enzymes require a sugar nucleotide as donor substrate that must be generated in situ for preparative applications by recycling of the nucleotide moiety, e.g. by sucr...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.02.022

    authors: Huang FC,Hinkelmann J,Hermenau A,Schwab W

    更新日期:2016-04-20 00:00:00

  • Characterization of a new microbial Pictet-Spenglerase NscbB affording the β-carboline skeletons from Nocardiopsis synnemataformans DSM 44143.

    abstract::The enzymatic Pictet-Spengler (PS) reaction, catalyzed by Pictet-Spenglerase (PSase), is the feature of β-carboline (βC) alkaloid biosynthesis. NscbB is a rare microbial PSase discovered from a cryptic β-carboline alkaloid biosynthetic gene cluster (BGC) in the Nocardiopsis synnemataformans DSM 44143 (kidney transplan...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2018.07.007

    authors: Chen Q,Zhang S,Xie Y

    更新日期:2018-09-10 00:00:00

  • Complete genome sequence of Bacillus methylotrophicus JJ-D34 isolated from deonjang, a Korean traditional fermented soybean paste.

    abstract::Bacillus methylotrophicus JJ-D34 showing good proteolytic and antipathogenic activities was isolated from doenjang, a Korean traditional fermented soybean paste. Here, we report the complete genome sequence of strain JJ-D34 harboring a 4,105,955 bp circular chromosome encoding 4044 genes with a 46.24% G+C content, whi...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2015.12.030

    authors: Jung JY,Chun BH,Moon JY,Yeo SH,Jeon CO

    更新日期:2016-02-10 00:00:00

  • Albumin-binding domain from Streptococcus zooepidemicus protein Zag as a novel strategy to improve the half-life of therapeutic proteins.

    abstract::Recombinant antibody fragments belong to the promising class of biopharmaceuticals with high potential for future therapeutic applications. However, due to their small size they are rapidly cleared from circulation. Binding to serum proteins can be an effective approach to improve pharmacokinetic properties of short h...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2017.05.017

    authors: Cantante C,Lourenço S,Morais M,Leandro J,Gano L,Silva N,Leandro P,Serrano M,Henriques AO,Andre A,Cunha-Santos C,Fontes C,Correia JDG,Aires-da-Silva F,Goncalves J

    更新日期:2017-07-10 00:00:00

  • Comparison of different biosensor systems suitable for bioprocess monitoring.

    abstract::To achieve effective bioprocess monitoring, sensing systems are required which are suitable for an on-line determination of substrates, inhibitors, nutrients or products. Such devices may utilise biochemical principles, i.e. the specific interaction of biochemical receptors with their surroundings. They can be constru...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(93)90072-u

    authors: Bilitewski U,Drewes W,Neermann J,Schrader J,Surkow R,Schmid RD,Bradley J

    更新日期:1993-12-01 00:00:00

  • An optimization study for expression of the rabies virus glycoprotein (RVGP) in mammalian cell lines using the Semliki Forest virus (SFV).

    abstract::The Semliki Forest virus (SFV) viral vector has been widely used for transient protein expression. This study aimed to analyze comprehensively the capacity of SFV vector to express rabies lyssavirus glycoprotein (RVGP) in mammalian cells. The assessed parameters were transfection strategy, multiplicity of infection (M...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2019.08.012

    authors: de Rezende AG,Fernández Núñez EG,Astray RM,Puglia ALP,Pereira CA,Jorge SAC

    更新日期:2019-10-10 00:00:00