Of mothballs and old yellow enzymes.

Abstract:

:Polycyclic aromatic hydrocarbons (PAHs) are persistent and toxic environmental pollutants that accumulate in anoxic habitats. With the exception of naphthalene, nothing is known about the microbial degradation of PAH in these environments. The challenge that must be met in anaerobic PAH degradation is the destabilization of the resonance energy of the aromatic ring system, which requires electrons with very negative redox potentials. Estelmann et al. (2014) identify two enzymes from sulphate-reducing bacteria that perform successive 2-electron reductions of a coenzyme A thioester derivative of naphthalene. The first reduces 2-naphthoyl-CoA to 5,6-dihydro-2-naphthoyl-CoA and the second generates 5,6,7,8-tetrahydro-2-naphthoyl-CoA. Surprisingly, both enzymes are members of the 'old yellow enzyme' (OYE) family of flavoproteins. Neither uses adenosine triphosphate to achieve reduction of the aromatic ring. Typically, OYEs have flavin mononucleotide as cofactor and use nicotinamide adenine dinucleotide (phosphate) as reductant. Both ring reductases have flavin adenine dinucleotide and an iron-sulphur cluster as additional cofactors. Evidence also suggests that in the sulphate-reducing bacteria, these enzymes form a complex, allowing substrate channeling. The findings of this superb study represent unprecedented biochemistry. This work sheds light on how microbes meet the thermodynamic challenges of life at the redox limit.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Sawers RG

doi

10.1111/mmi.12874

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

157-61

issue

2

eissn

0950-382X

issn

1365-2958

journal_volume

95

pub_type

评论,杂志文章
  • DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus.

    abstract::The level of DnaA, a key bacterial DNA replication initiation factor, increases during the Caulobacter swarmer-to-stalked transition just before the G1/S transition. We show that DnaA coordinates DNA replication initiation with cell cycle progression by acting as a global transcription factor. Using DnaA depletion and...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2005.04912.x

    authors: Hottes AK,Shapiro L,McAdams HH

    更新日期:2005-12-01 00:00:00

  • Activator-independent formation of a closed complex between sigma 54-holoenzyme and nifH and nifU promoters of Klebsiella pneumoniae.

    abstract::The alternative sigma factor sigma 54 is required for transcription of nitrogen fixation genes in Klebsiella pneumoniae and other diazotrophs. The nif genes, and other E sigma 54-dependent genes whose products are necessary for a wide range of processes, are postively regulated. A unifying model that is well supported...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1992.tb00887.x

    authors: Buck M,Cannon W

    更新日期:1992-06-01 00:00:00

  • Localisation and interactions of the Vipp1 protein in cyanobacteria.

    abstract::The Vipp1 protein is essential in cyanobacteria and chloroplasts for the maintenance of photosynthetic function and thylakoid membrane architecture. To investigate its mode of action we generated strains of the cyanobacteria Synechocystis sp. PCC6803 and Synechococcus sp. PCC7942 in which Vipp1 was tagged with green f...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12826

    authors: Bryan SJ,Burroughs NJ,Shevela D,Yu J,Rupprecht E,Liu LN,Mastroianni G,Xue Q,Llorente-Garcia I,Leake MC,Eichacker LA,Schneider D,Nixon PJ,Mullineaux CW

    更新日期:2014-10-13 00:00:00

  • Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors.

    abstract::We determined the genome-wide environmental stress response (ESR) expression profile of Candida glabrata, a human pathogen related to Saccharomyces cerevisiae. Despite different habitats, C. glabrata, S. cerevisiae, Schizosaccharomyces pombe and Candida albicans have a qualitatively similar ESR. We investigate the fun...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06301.x

    authors: Roetzer A,Gregori C,Jennings AM,Quintin J,Ferrandon D,Butler G,Kuchler K,Ammerer G,Schüller C

    更新日期:2008-08-01 00:00:00

  • More pieces in the promoter jigsaw: recognition of -10 regions by alternative sigma factors.

    abstract::Two papers in this issue of Molecular Microbiology from Carol Gross and colleagues describe experiments that investigate how two alternative Escherichia coli sigma proteins recognize target promoter -10 regions. A combination of genetics, biochemistry and bioinformatics is used to show that determinants in two adjacen...

    journal_title:Molecular microbiology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-2958.2009.06692.x

    authors: Busby SJ

    更新日期:2009-05-01 00:00:00

  • Chromosomal constraints in Gram-positive bacteria revealed by artificial inversions.

    abstract::We used artificial chromosome inversions to investigate the chromosomal constraints that preserve genome organization in the Gram-positive bacterium Lactococcus lactis. Large inversions, 80-1260 kb in length, disturbing the symmetry of the origin and terminus of the replication axis to various extents, were constructe...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03847.x

    authors: Campo N,Dias MJ,Daveran-Mingot ML,Ritzenthaler P,Le Bourgeois P

    更新日期:2004-01-01 00:00:00

  • Fibronectin-binding proteins of Staphylococcus aureus mediate activation of human platelets via fibrinogen and fibronectin bridges to integrin GPIIb/IIIa and IgG binding to the FcgammaRIIa receptor.

    abstract::Staphylococcus aureus is a leading cause of infective endocarditis (IE). Platelet activation promoted by S. aureus resulting in aggregation and thrombus formation is an important step in the pathogenesis of IE. Here, we report that the fibrinogen/fibronectin-binding proteins FnBPA and FnBPB are major platelet-activati...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2005.04922.x

    authors: Fitzgerald JR,Loughman A,Keane F,Brennan M,Knobel M,Higgins J,Visai L,Speziale P,Cox D,Foster TJ

    更新日期:2006-01-01 00:00:00

  • Multiple copies of MATE elements support autonomous plasmid replication in Aspergillus nidulans.

    abstract::The AMA1 sequence is an efficient plasmid replicator and transformation enhancer in Aspergillus nidulans. It comprises two long perfect inverted repeats (MATE elements) flanking a short, unique, central spacer. Subclone analysis indicates that the complete inverted duplication, but not the unique central spacer, is ne...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1996.tb02629.x

    authors: Aleksenko A,Gems D,Clutterbuck J

    更新日期:1996-04-01 00:00:00

  • Targeted deletion of Plasmodium knowlesi Duffy binding protein confirms its role in junction formation during invasion.

    abstract::Red cell invasion by Plasmodium merozoites involves multiple steps such as attachment, apical reorientation, junction formation and entry into a parasitophorous vacuole. These steps are mediated by specific molecular interactions. P. vivax and the simian parasite P. knowlesi require interaction with the Duffy blood gr...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2005.04523.x

    authors: Singh AP,Ozwara H,Kocken CH,Puri SK,Thomas AW,Chitnis CE

    更新日期:2005-03-01 00:00:00

  • Controlling pore assembly of staphylococcal gamma-haemolysin by low temperature and by disulphide bond formation in double-cysteine LukF mutants.

    abstract::Staphylococcal LukF and Hlg2 are water-soluble monomers of gamma-haemolysin that assemble into oligomeric pores on the erythrocyte membranes. Here, we have created double-cysteine LukF mutants, in which single disulphide bonds connect either the prestem domain and the cap domain (V12C-T136C, Cap-Stem), or two beta-str...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.03125.x

    authors: Nguyen VT,Higuchi H,Kamio Y

    更新日期:2002-09-01 00:00:00

  • Two sources of endogenous hydrogen peroxide in Escherichia coli.

    abstract::Mechanisms of hydrogen peroxide generation in Escherichia coli were investigated using a strain lacking scavenging enzymes. Surprisingly, the deletion of many abundant flavoenzymes that are known to autoxidize in vitro did not substantially lessen overall H(2)O(2) formation. However, H(2)O(2) production diminished by ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07059.x

    authors: Korshunov S,Imlay JA

    更新日期:2010-03-01 00:00:00

  • Liver-specific protein 2: a Plasmodium protein exported to the hepatocyte cytoplasm and required for merozoite formation.

    abstract::The liver stage is the first stage of the malaria parasite that replicates in the vertebrate host. However, little is known about the interplay between the parasite liver stage and its host cell, the hepatocyte. In this study, we identified an exported protein that has a critical role in parasite development in host h...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12083

    authors: Orito Y,Ishino T,Iwanaga S,Kaneko I,Kato T,Menard R,Chinzei Y,Yuda M

    更新日期:2013-01-01 00:00:00

  • Carbohydrate-binding agents act as potent trypanocidals that elicit modifications in VSG glycosylation and reduced virulence in Trypanosoma brucei.

    abstract::The surface of Trypanosoma brucei is covered by a dense coat of glycosylphosphatidylinositol-anchored glycoproteins. The major component is the variant surface glycoprotein (VSG) which is glycosylated by both paucimannose and oligomannose N-glycans. Surface glycans are poorly accessible and killing mediated by peptide...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12359

    authors: Castillo-Acosta VM,Vidal AE,Ruiz-Pérez LM,Van Damme EJ,Igarashi Y,Balzarini J,González-Pacanowska D

    更新日期:2013-11-01 00:00:00

  • Hfq reduces envelope stress by controlling expression of envelope-localized proteins and protein complexes in enteropathogenic Escherichia coli.

    abstract::Gram-negative bacteria possess several envelope stress responses that detect and respond to damage to this critical cellular compartment. The σ(E) envelope stress response senses the misfolding of outer membrane proteins (OMPs), while the Cpx two-component system is believed to detect the misfolding of periplasmic and...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12581

    authors: Vogt SL,Raivio TL

    更新日期:2014-05-01 00:00:00

  • CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties.

    abstract::Clusters of regularly interspaced short palindromic repeats (CRISPRs) of Sulfolobus fall into three main families based on their repeats, leader regions, associated cas genes and putative recognition sequences on viruses and plasmids. Spacer sequence matches to different viruses and plasmids of the Sulfolobales reveal...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2009.06641.x

    authors: Lillestøl RK,Shah SA,Brügger K,Redder P,Phan H,Christiansen J,Garrett RA

    更新日期:2009-04-01 00:00:00

  • The role of RNA polymerase in transcriptional fidelity.

    abstract::The overall transcription of DNA has previously been demonstrated to proceed at extremely high levels of accuracy. We review the evidence that the process of transcription is subject to proof-reading in the Hopfield sense. In addition, we speculate that the proof-reading activity associated with transcription is subje...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.1991.tb01872.x

    authors: Libby RT,Gallant JA

    更新日期:1991-05-01 00:00:00

  • Characterization of anf genes specific for the alternative nitrogenase and identification of nif genes required for both nitrogenases in Rhodobacter capsulatus.

    abstract::To identify Rhodobacter capsulatus nif genes necessary for the alternative nitrogenase, strains carrying defined mutations in 32 genes and open reading frames of nif region A, B or C were constructed. The ability of these mutants to grow on nitrogen-free medium with molybdenum (Nif phenotype) or in a nifHDK deletion b...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01611.x

    authors: Schüddekopf K,Hennecke S,Liese U,Kutsche M,Klipp W

    更新日期:1993-05-01 00:00:00

  • Characterization of a new cytotoxin that contributes to Staphylococcus aureus pathogenesis.

    abstract::Staphylococcus aureus is an important pathogen that continues to be a significant global health threat because of the prevalence of methicillin-resistant S. aureus strains (MRSA). The pathogenesis of this organism is partly attributed to the production of a large repertoire of cytotoxins that target and kill innate im...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07490.x

    authors: Dumont AL,Nygaard TK,Watkins RL,Smith A,Kozhaya L,Kreiswirth BN,Shopsin B,Unutmaz D,Voyich JM,Torres VJ

    更新日期:2011-02-01 00:00:00

  • Cytotoxic activity of a recombinant chimaeric protein between Pseudomonas aeruginosa exotoxin A and Corynebacterium diphtheriae diphtheria toxin.

    abstract::A segment of the exotoxin A gene of Pseudomonas aeruginosa, coding for the N-terminal end of domain I and domain II of the toxin (ETA), was genetically fused to the diphtheria toxin gene of Corynebacterium diphtheriae, coding for the N-terminal end of A fragment of diphtheria toxin (DT). The resulting hybrid protein (...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1992.tb00849.x

    authors: Guidi-Rontani C

    更新日期:1992-05-01 00:00:00

  • Nitric oxide-sensitive and -insensitive interaction of Bacillus subtilis NsrR with a ResDE-controlled promoter.

    abstract::NsrR is a nitric oxide (NO)-sensitive transcription repressor that controls NO metabolism in a wide range of bacteria. In Bacillus subtilis, NsrR represses transcription of the nitrite reductase (nasDEF) genes that are under positive control of the ResD-ResE two-component signal transduction system. Derepression is ac...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07407.x

    authors: Kommineni S,Yukl E,Hayashi T,Delepine J,Geng H,Moënne-Loccoz P,Nakano MM

    更新日期:2010-12-01 00:00:00

  • The pathway of recombining short homologous ends in Escherichia coli revealed by the genetic study.

    abstract::The recombination of short homologous ends in Escherichia coli has been known for 30 years, and it is often used for both site-directed mutagenesis and in vivo cloning. For cloning, a plasmid and target DNA fragments were converted into linear DNA fragments with short homologous ends, which are joined via recombinatio...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14677

    authors: Yang Y,Wang T,Yu Q,Liu H,Xun L,Xia Y

    更新日期:2020-12-29 00:00:00

  • Post-transcriptional regulation by distal Shine-Dalgarno sequences in the grpE-dnaK intergenic region of Streptococcus mutans.

    abstract::A unique 373 bp region (igr66) between grpE and dnaK of Streptococcus mutans lacks a promoter but is required for optimal production of DnaK. Northern blotting using probes specific to hrcA, igr66 or dnaK revealed multiple transcripts produced from the dnaK operon and 5'-RACE mapped 5' termini of multiple dnaK transcr...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13122

    authors: Palmer SR,Burne RA

    更新日期:2015-10-01 00:00:00

  • Function of bacteriophage G7C esterase tailspike in host cell adsorption.

    abstract::Bacteriophages recognize and bind to their hosts with the help of receptor-binding proteins (RBPs) that emanate from the phage particle in the form of fibers or tailspikes. RBPs show a great variability in their shapes, sizes, and location on the particle. Some RBPs are known to depolymerize surface polysaccharides of...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13710

    authors: Prokhorov NS,Riccio C,Zdorovenko EL,Shneider MM,Browning C,Knirel YA,Leiman PG,Letarov AV

    更新日期:2017-08-01 00:00:00

  • Lactococcus lactis YfiA is necessary and sufficient for ribosome dimerization.

    abstract::Dimerization and inactivation of ribosomes in Escherichia coli is a two-step process that involves the binding of ribosome modulation factor (RMF) and hibernation promotion factor (HPF). Lactococcus lactis MG1363 expresses a protein, YfiA(L) (l) , which associates with ribosomes in the stationary phase of growth and i...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12468

    authors: Puri P,Eckhardt TH,Franken LE,Fusetti F,Stuart MC,Boekema EJ,Kuipers OP,Kok J,Poolman B

    更新日期:2014-01-01 00:00:00

  • The FNR-type transcriptional regulator SinR controls maturation of Agrobacterium tumefaciens biofilms.

    abstract::Agrobacterium tumefaciens is a plant pathogen that persists as surface-associated populations on plants or soil particles. A genetic screen for A. tumefaciens mutants deficient for surface interactions identified a mutant that forms thin, sparsely populated biofilms, but is proficient for initial attachment. The mutan...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04079.x

    authors: Ramey BE,Matthysse AG,Fuqua C

    更新日期:2004-06-01 00:00:00

  • Listeria monocytogenes virulence proteins induce surface expression of Fas ligand on T lymphocytes.

    abstract::Virulence factors secreted by Listeria monocytogenes are known to interfere with host cellular signalling pathways. We investigated whether L. monocytogenes modulates T-cell receptor signalling by examining surface expression of proteins known to be upregulated on activated T cells. In vitro culture of murine splenocy...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2003.03931.x

    authors: Zenewicz LA,Skinner JA,Goldfine H,Shen H

    更新日期:2004-03-01 00:00:00

  • Local silencing controls the oxidative stress response and the multidrug resistance in Candida glabrata.

    abstract::In Candida glabrata, the sirtuins Sir2 and Hst1 control the expression of a wide number of genes including adhesins required for host colonization and niacin transporters needed for growth. Given that these sirtuins can be inactivated during infection, we asked if their inhibition could modify the response of C. glabr...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12247

    authors: Orta-Zavalza E,Guerrero-Serrano G,Gutiérrez-Escobedo G,Cañas-Villamar I,Juárez-Cepeda J,Castaño I,De Las Peñas A

    更新日期:2013-06-01 00:00:00

  • A small (2.4 Mb) Bacillus cereus chromosome corresponds to a conserved region of a larger (5.3 Mb) Bacillus cereus chromosome.

    abstract::We have determined the sizes of the chromosomes of six Bacillus cereus strains (range 2.4-4.3 Mb) and constructed a physical map of the smallest B. cereus chromosome (2.4 Mb). This map was compared to those of the chromosomes of four B. cereus strains and one B. thuringiensis strain previously determined to be 5.4-6.3...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb00411.x

    authors: Carlson CR,Kolstø AB

    更新日期:1994-07-01 00:00:00

  • Genetic characterization of a Rhizobium meliloti lactose utilization locus.

    abstract::We identified several linked genes of a lactose regulon in Rhizobium meliloti. These were lacZ, the structural gene for beta-galactosidase; lacR, the lactose repressor gene; and two genes encoding proteins of unknown function, lacW and lacX. Insertion mutants in lacW and lacZ belonged to a single genetic complementati...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb00298.x

    authors: Jelesko JG,Leigh JA

    更新日期:1994-01-01 00:00:00

  • A haem cofactor is required for redox and light signalling by the AppA protein of Rhodobacter sphaeroides.

    abstract::The AppA protein of Rhodobacter sphaeroides is unique in its ability to sense and transmit redox signals as well as light signals. By functioning as antagonist to the PpsR transcriptional repressor, it regulates the expression of photosynthesis genes in response to these environmental stimuli. Here we show binding of ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.05724.x

    authors: Han Y,Meyer MH,Keusgen M,Klug G

    更新日期:2007-05-01 00:00:00