Influence of paroxysmal activity on background synchronization in epileptic recordings.

Abstract:

BACKGROUND:The presence of spikes and sharp waves in recordings of epileptic patients contaminates background signal synchronization. When estimating functional connectivity between extended cortical areas, the influence of epileptic spikes in specific areas should be considered; however, this step is sometimes overlooked. We present a simple method for quantifying the influence of epileptic activity on background signal synchronization. METHOD:Standard synchronization measures were calculated for both pure correlated Gaussian signals and correlated Gaussian signals with different levels of epileptic spikes in order to determine the influence of epileptic activity on synchronization estimates. RESULTS:Synchronization from invasive epileptic recordings (e.g., depth electrodes) displays a much higher bias due to epileptic activity than superficial electrodes. Moreover, statistical methods such as mutual information are more affected by spike presence than phase synchronization methods. The influence of spikes is far greater at low values of background synchronization. CONCLUSIONS:The information provided by this procedure makes it possible to differentiate true background synchronization from spike synchronization. Thus, our procedure serves as a guide for analyzing synchronization and functional connectivity calculations in epileptic recordings.

journal_name

J Neurosci Methods

authors

Pastor J,Sola RG,Ortega GJ

doi

10.1016/j.jneumeth.2013.11.027

subject

Has Abstract

pub_date

2014-02-15 00:00:00

pages

69-73

eissn

0165-0270

issn

1872-678X

pii

S0165-0270(13)00416-0

journal_volume

223

pub_type

杂志文章
  • Real-time spectral intensity analysis of the EEG on a common microcomputer.

    abstract::An inexpensive system for quantitative electroencephalogram (EEG) analysis over long time periods is described. This system continuously analyses EEG for intensity versus frequency content, and saves averaged 'data reduced' intensity spectra to disk at regular intervals. The method had adequate frequency resolution fo...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(90)90066-o

    authors: Williams CE,Gluckman PD

    更新日期:1990-04-01 00:00:00

  • The use of in vivo direct drug application to assess neural regulation of muscle properties.

    abstract::Skeletal muscle is a convenient model system for studying basic questions on the neural regulation of synaptogenesis and of many properties of sarcolemma and contractile apparatus. The study of the neural signals involved in a particular regulation and of the mediating intracellular pathways, requires the chronic appl...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(00)00352-6

    authors: Buffelli M,Busetto G,Cangiano A

    更新日期:2001-04-30 00:00:00

  • Long-term culturing of porcine nodose ganglia.

    abstract:BACKGROUND:Neuronal cell cultures are widely used in the field of neuroscience. Cell dissociation allows for the isolation of a desired cell type, yet the neuronal complexity that distinguishes the nervous system is often lost as a result. Thus, culturing neural tissues in ex vivo format provides a physiological contex...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.108546

    authors: Kuan SP,Atanasova KR,Guevara MV,Collins EN,Reznikov LR

    更新日期:2020-02-15 00:00:00

  • A horizontal slice preparation for examining the functional connectivity of dorsal column fibres in mouse spinal cord.

    abstract::In spinal cord injury (SCI) research, axon regeneration across spinal lesions is most often assessed using anatomical methods. It would be extremely advantageous, however, to examine the functional synaptic connectivity of regenerating fibres, using high-resolution electrophysiological methods. We have therefore devel...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2011.06.017

    authors: Flynn JR,Brichta AM,Galea MP,Callister RJ,Graham BA

    更新日期:2011-09-15 00:00:00

  • A computer program for sequencing and presenting complex sounds for auditory neuroimaging studies.

    abstract::This paper describes a computer program, named ASAP (audio sequencing and presentation), that runs on IBM PC compatible hardware with a Microsoft Windows operating system and has been specially designed for facilitating auditory neuroimaging studies. The program's main characteristics are: (1) the ability to generate ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(00)00249-1

    authors: Kieckhefer E,Kanwal JS

    更新日期:2000-08-15 00:00:00

  • Quantitative morphological study of microglial cells in the ischemic rat brain using principal component analysis.

    abstract::Pathogenic stimuli induce alterations in the morphology of microglial cells. We analysed changes in lectin-stained cells on the 1st, 3rd, 7th or 14th day after transient global ischemia. Three areas differing in the degree of microglial reaction were selected for analysis: the upper cerebral cortex, the hippocampal CA...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2005.01.009

    authors: Soltys Z,Orzylowska-Sliwinska O,Zaremba M,Orlowski D,Piechota M,Fiedorowicz A,Janeczko K,Oderfeld-Nowak B

    更新日期:2005-07-15 00:00:00

  • Silanization of glass in the making of ion-sensitive microelectrodes.

    abstract::The silanization of glass, particularly Pyrex, was studied using reaction conditions that might be applied in the fabrication of ion-sensitive microelectrodes of the liquid-membrane type. The efficacy was tested by measuring the hydrophobicity (contact angle) or electrical resistivity of the treated surface. Aminosila...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(83)90037-7

    authors: Munoz JL,Deyhimi F,Coles JA

    更新日期:1983-07-01 00:00:00

  • Microstructure with diffusion MRI: what scale we are sensitive to?

    abstract::Diffusion-weighted MRI is the forerunner of the rapidly developed microstructure MRI (μMRI) aimed at in vivo evaluation of the cellular tissue architecture. This brief review focuses on the spatiotemporal scales of the microstructure that are accessible using different diffusion MRI techniques and the need to weight t...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.jneumeth.2020.108910

    authors: Kiselev VG

    更新日期:2021-01-01 00:00:00

  • Techniques for improving stereotaxic accuracy in Macaca fascicularis.

    abstract::Sources of stereotaxic variability in long-tailed macaques (Macaca fascicularis) were examined by X-ray techniques. Accuracy in the vertical dimension can be improved significantly by measuring from the top of the brain rather than from the Frankfurt plane established by external bony landmarks. Even greater accuracy ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(85)90029-9

    authors: Dubach MF,Tongen VC,Bowden DM

    更新日期:1985-04-01 00:00:00

  • The M-Maze task: An automated method for studying fear memory in rats exposed to protracted aversive conditioning.

    abstract:BACKGROUND:Fear conditioning (FC) in rodents is the most used animal model to investigate the neurobiology of posttraumatic stress disorder (PTSD). Although research using FC has generated a better understanding of fear memories, studies often rely on mild or moderate FC training and behavioral analysis generally focus...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2018.02.004

    authors: Souza RR,Robertson NM,Pruitt DT,Noble L,Meyers EC,Gonzales PA,Bleker NP,Carey HL,Hays SA,Kilgard MP,McIntyre CK,Rennaker RL

    更新日期:2018-03-15 00:00:00

  • A new use for long-term frozen brain tissue: golgi impregnation.

    abstract::The study of dendritic spine shape and number has become a standard in the analysis of synaptic transmission anomalies since a considerable number of neuropsychiatric and neurological diseases have their foundation in alterations in these structures. One of the best ways to study possible alterations of dendritic spin...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2008.08.021

    authors: Melendez-Ferro M,Perez-Costas E,Roberts RC

    更新日期:2009-01-30 00:00:00

  • In vivo visualization of callosal pathways: a novel approach to the study of cortical organization.

    abstract::I describe here the successful visualization of interhemispheric callosal connections in the live mammalian cortex. The development of this method was prompted by the finding that fluorescent tracer labeling of groups of cortical neurons, when done under optimal conditions, is sufficiently intense to be visible even i...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(88)90137-9

    authors: Malach R

    更新日期:1988-10-01 00:00:00

  • Microelectrode array analysis of hippocampal network dynamics following theta-burst stimulation via current source density reconstruction by Gaussian interpolation.

    abstract:BACKGROUND:Multielectrode arrays (MEAs) have been used to understand electrophysiological network dynamics by recording real-time activity in groups of cells. The extent to which the collection of such data enables hypothesis testing on the level of circuits and networks depends largely on the sophistication of the ana...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2016.02.011

    authors: Kim HB,Oh TI,Swanberg KM,Lee MB,Kim TW,Woo EJ,Park JH,Kwon OI

    更新日期:2016-05-01 00:00:00

  • Spike-train acquisition, analysis and real-time experimental control using a graphical programming language (LabView).

    abstract::A solution is described for the acquisition on a personal computer of standard pulses derived from neuronal discharge, measurement of neuronal discharge times, real-time control of stimulus delivery based on specified inter-pulse interval conditions in the neuronal spike train, and on-line display and analysis of the ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(95)00061-5

    authors: Nordstrom MA,Mapletoft EA,Miles TS

    更新日期:1995-11-01 00:00:00

  • Measurement of phase gradients in the EEG.

    abstract::Previous research has shown that spatio-temporal waves in the EEG are generally of long spatial wavelength and form smooth patterns of phase gradients at particular time-samples. This paper describes a method to measure smooth phase gradients of long spatial wavelength in the EEG. The method depends on the global patt...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2006.02.016

    authors: Alexander DM,Trengove C,Wright JJ,Boord PR,Gordon E

    更新日期:2006-09-30 00:00:00

  • Stereological estimation of total microglia number in mouse hippocampus.

    abstract::Microglia are brain cells of considerable interest because of their role in CNS inflammatory responses and strong association with neuritic plaques in Alzheimer's disease (AD). In the present study, immunocytochemistry was combined with unbiased stereology to estimate the mean total number of microglia in dentate gyru...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(98)00100-9

    authors: Long JM,Kalehua AN,Muth NJ,Hengemihle JM,Jucker M,Calhoun ME,Ingram DK,Mouton PR

    更新日期:1998-10-01 00:00:00

  • Variability and uncertainty in the rodent controlled cortical impact model of traumatic brain injury.

    abstract:BACKGROUND:Controlled cortical impact (CCI) has emerged as one of the most flexible and clinically applicable approaches for the induction of traumatic brain injury (TBI) in rodents and other species. Although this approach has been shown to model cognitive and functional outcomes associated with TBI in humans, recent ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2018.10.027

    authors: Sellappan P,Cote J,Kreth PA,Schepkin VD,Darkazalli A,Morris DR,Alvi FS,Levenson CW

    更新日期:2019-01-15 00:00:00

  • The effects of apparatus design and test procedure on learning and memory performance of C57BL/6J mice on the Barnes maze.

    abstract::The Barnes maze is a visuo-spatial learning and memory test originally designed for use with rats, and later adapted for use with mice. The Barnes maze design and test procedure vary across studies using mice, but the effects of variation in Barnes maze design and test procedure on learning and memory in mice have not...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2011.09.027

    authors: O'Leary TP,Brown RE

    更新日期:2012-01-30 00:00:00

  • A simple method for fabricating horizontal and vertical microwire arrays.

    abstract::Microwire array electrodes are important in multi-site, multiple single-unit recording experiments. A simple method is described herein for the construction of microwire arrays consisting of evenly spaced insulated microwires in either horizontal or vertical orientations. Several key steps in the fabrication of a good...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(03)00235-8

    authors: Tsai ML,Yen CT

    更新日期:2003-12-30 00:00:00

  • High-resolution 3D MRI of mouse brain reveals small cerebral structures in vivo.

    abstract::This work demonstrates technical approaches to high-quality magnetic resonance imaging (MRI) of small structures of the mouse brain in vivo. It turns out that excellent soft-tissue contrast requires the reduction of partial volume effects by using 3D MRI at high (isotropic) resolution with linear voxel dimensions of a...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(02)00211-x

    authors: Natt O,Watanabe T,Boretius S,Radulovic J,Frahm J,Michaelis T

    更新日期:2002-10-30 00:00:00

  • Chimera construction using multiple-template-based sequential PCRs.

    abstract::Chimera construction between different proteins is a useful method for investigating protein structure and function relationships. However, this technique, by its traditional application, has been daunting because of its complex procedure and low success rate. Here we describe a protocol for constructing chimeras betw...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2010.08.033

    authors: Shan Q,Lynch JW

    更新日期:2010-10-30 00:00:00

  • A culture model for neurite regeneration of human spinal cord neurons.

    abstract::Effective therapeutic interventions for injuries of the central nervous system such as spinal cord injury are still unavailable, having a great impact on the quality of life of victims and their families, as well as high costs in medical care. Animal models of spinal cord injury are costly, time-consuming and labor-in...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2011.08.024

    authors: Koechling T,Khalique H,Sundström E,Ávila J,Lim F

    更新日期:2011-10-15 00:00:00

  • Custom-fit radiolucent cranial implants for neurophysiological recording and stimulation.

    abstract:BACKGROUND:Recording and manipulating neural activity in awake behaving animal models requires long-term implantation of cranial implants that must address a variety of design considerations, which include preventing infection, minimizing tissue damage, mechanical strength of the implant, and MRI compatibility. NEW ME...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2014.12.011

    authors: Mulliken GH,Bichot NP,Ghadooshahy A,Sharma J,Kornblith S,Philcock M,Desimone R

    更新日期:2015-02-15 00:00:00

  • A sequential protocol combining dual neuroanatomical tract-tracing with the visualization of local circuit neurons within the striatum.

    abstract::We describe here an experimental approach designed to aid in the identification of complex brain circuits within the rat corpus striatum. Our aim was to characterize in a single section (i) striatal thalamic afferents, (ii) striatopallidal projection neurons and (iii) striatal local circuit interneurons. To this end, ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(01)00440-x

    authors: Gonzalo N,Moreno A,Erdozain MA,García P,Vázquez A,Castle M,Lanciego JL

    更新日期:2001-10-15 00:00:00

  • EPI distortion correction for concurrent human brain stimulation and imaging at 3T.

    abstract:BACKGROUND:Transcranial magnetic stimulation (TMS) can be paired with functional magnetic resonance imaging (fMRI) in concurrent TMS-fMRI experiments. These multimodal experiments enable causal probing of network architecture in the human brain which can complement alternative network mapping approaches. Critically, me...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.108400

    authors: Oh H,Kim JH,Yau JM

    更新日期:2019-11-01 00:00:00

  • Golgi staining-like retrograde labeling of brain circuits using rabies virus: Focus onto the striatonigral neurons.

    abstract:BACKGROUND:The introduction of viral transneuronal tracers in the toolbox of neural tract-tracing methods has been an important addition in the field of connectomics for deciphering circuit-level architecture of the nervous system. One of the added values of viral compared to conventional retrograde tracers, in particu...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.jneumeth.2020.108872

    authors: Salin P,Blondel D,Kerkerian-Le Goff L,Coulon P

    更新日期:2020-10-01 00:00:00

  • Analysis of the growth cone turning assay for studying axon guidance.

    abstract::The "pipette" or "growth cone turning" assay is widely used for studying how axons respond to diffusible guidance cues in their environment. However, little quantitative analysis has been presented of the gradient shapes produced by this assay, or how they depend on parameters of the assay. Here we used confocal micro...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2008.01.014

    authors: Pujic Z,Giacomantonio CE,Unni D,Rosoff WJ,Goodhill GJ

    更新日期:2008-05-30 00:00:00

  • New software dedicated to virtual mazes for human cognitive investigations.

    abstract:BACKGROUND:Compared to previous neuropsychological investigations with standard paper-pen tests limited to test complex spatial learning and memory processes, 3-D virtual immersive technology might offer new tools for research purposes and for diagnosis in patients suffering from mild cognitive impairment or dementia. ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.108388

    authors: Machado ML,Lefèvre N,Philoxene B,Le Gall A,Madeleine S,Fleury P,Smith PF,Besnard S

    更新日期:2019-11-01 00:00:00

  • Double-labeling of saphenous nerve neuron pools: a model for determining the accuracy of axon regeneration at the single neuron level.

    abstract::We have developed a labeling procedure which accurately and consistently labels the original sensory pools projecting to their respective nerve branches as a model to quantify the accuracy of nerve regeneration at the single neuron level. Adult and juvenile rats had the saphenous branch of the femoral nerve transected...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(91)90078-e

    authors: Harsh C,Archibald SJ,Madison RD

    更新日期:1991-09-01 00:00:00

  • An ultra-stable non-coherent light source for optical measurements in neuroscience and cell physiology.

    abstract::We demonstrate that high power light-emitting diodes (LED's) exhibit low-frequency noise characteristics that are clearly superior to those of quartz tungsten halogen lamps, the non-coherent light source most commonly employed when freedom from intensity variation is critical. Their extreme stability over tens of seco...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2004.06.009

    authors: Salzberg BM,Kosterin PV,Muschol M,Obaid AL,Rumyantsev SL,Bilenko Y,Shur MS

    更新日期:2005-01-30 00:00:00