EPI distortion correction for concurrent human brain stimulation and imaging at 3T.

Abstract:

BACKGROUND:Transcranial magnetic stimulation (TMS) can be paired with functional magnetic resonance imaging (fMRI) in concurrent TMS-fMRI experiments. These multimodal experiments enable causal probing of network architecture in the human brain which can complement alternative network mapping approaches. Critically, merely introducing the TMS coil into the scanner environment can sometimes produce substantial magnetic field inhomogeneities and spatial distortions which limit the utility of concurrent TMS-fMRI. METHOD AND RESULTS:We assessed the efficacy of point spread function corrected echo planar imaging (PSF-EPI) in correcting for the field inhomogeneities associated with a TMS coil at 3 T. In phantom and brain scans, we quantitatively compared the coil-induced distortion artifacts measured in EPI scans with and without PSF correction. We found that the application of PSF corrections to the EPI data significantly improved signal-to-noise and reduced distortions. In phantom scans with the PSF-EPI sequence, we also characterized the temporal profile of dynamic artifacts associated with TMS delivery and found that image quality remained high as long as the TMS pulse preceded the RF excitation pulses by at least 50 ms. Lastly, we validated the PSF-EPI sequence in human brain scans involving TMS and motor behavior as well as resting state fMRI scans. CONCLUSIONS:Our collective results demonstrate the potential benefits of PSF-EPI for concurrent TMS-fMRI when coil-related artifacts are a concern. The ability to collect high quality resting state fMRI data in the same session as the concurrent TMS-fMRI experiment offers a unique opportunity to interrogate network architecture in the human brain.

journal_name

J Neurosci Methods

authors

Oh H,Kim JH,Yau JM

doi

10.1016/j.jneumeth.2019.108400

subject

Has Abstract

pub_date

2019-11-01 00:00:00

pages

108400

eissn

0165-0270

issn

1872-678X

pii

S0165-0270(19)30257-2

journal_volume

327

pub_type

杂志文章
  • Rapid quantification of ischaemic injury and cerebroprotection in brain slices using densitometric assessment of 2,3,5-triphenyltetrazolium chloride staining.

    abstract::2,3,5-Triphenyltetrazolium chloride (TTC), a marker of mitochondrial enzyme activity, is widely used to assess the effects of cerebral ischaemia in vivo. In the present study, we characterised its utility as a simple rapid macrohistological measure of ischaemic damage in brain slices. Coronal rat corticostriatal slice...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(00)00277-6

    authors: Mathews KS,McLaughlin DP,Ziabari LH,Toner CC,Street PC,Hisgrove E,Bezzina EL,Stamford JA

    更新日期:2000-10-15 00:00:00

  • Reversed-phase liquid chromatographic purification and isolation of a radio-iodinated selective probe for mu opioid receptors in the brain.

    abstract::A Guard-PAK precolumn system was used for the reversed-phase liquid chromatography purification of a small, synthetic radiolabeled opioid peptide, FK 33-824 (D-Ala2, methyl-phe4, Met (O)ol5 enkephalin) (FK). This procedure involves trace enrichment of iodinated peptide onto the precolumn while iodination reagents are ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(92)90052-f

    authors: Miller MM,Gould BE,Joshi D,Bennett HP,James S,Billiar RB

    更新日期:1992-02-01 00:00:00

  • Human stem cells isolated from adult skeletal muscle differentiate into neural phenotypes.

    abstract::Multipotent neural stem cells have been isolated from the adult [Kirschenbaum B, Nedergaard M, Preuss A, Barami K, Fraser RA, Goldman SA. In vitro neuronal production and differentiation by precursor cells derived from the adult human forebrain. Cereb Cortex 1994;4(6):576-89; Laywell ED, Kukekov VG, Steindler DA. Mult...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2005.08.022

    authors: Schultz SS,Lucas PA

    更新日期:2006-04-15 00:00:00

  • A comparison of two cognitive test paradigms in a penetrating brain injury model.

    abstract::A rat model of penetrating ballistic-like brain injury (PBBI) was recently established to study military-relevant severe traumatic brain injury (TBI). The purpose of this study was to conduct a side-by-side evaluation of two well-established cognitive testing paradigms: the novel object recognition (NOR) task and the ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2010.03.012

    authors: Davis AR,Shear DA,Chen Z,Lu XC,Tortella FC

    更新日期:2010-05-30 00:00:00

  • Eliciting dual-frequency SSVEP using a hybrid SSVEP-P300 BCI.

    abstract:BACKGROUND:Steady-state visual-evoked potential (SSVEP)-based brain-computer interfaces (BCIs) generate weak SSVEP with a monitor and cannot use harmonic frequencies, whereas P300-based BCIs need multiple stimulation sequences. These issues can decrease the information transfer rate (ITR). NEW METHOD:In this paper, we...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2015.11.001

    authors: Chang MH,Lee JS,Heo J,Park KS

    更新日期:2016-01-30 00:00:00

  • A vertical stereotaxic approach to auditory cortex in the unanesthetized monkey.

    abstract::A procedure is described for chronic single-unit recording from monkey auditory cortex. The cortex is approached in a vertical stereotaxic plane and subsequent histology is performed on tissue sections made in the same plane. The procedure maximizes the probability of locating and identifying auditory cortical areas d...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(80)90043-6

    authors: Pfingst BE,O'Connor TA

    更新日期:1980-02-01 00:00:00

  • Neuroanatomical tracing at high resolution.

    abstract::Most techniques used for the study of the fiber connectivity in the central nervous system produce results which are visualized in the conventional light microscope or fluorescence microscope. Although in some cases this may be sufficient, often proof is necessary that fibers which enter a particular brain area indeed...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(00)00300-9

    authors: Van Haeften T,Wouterlood FG

    更新日期:2000-11-15 00:00:00

  • An investigation of experimental conditions for studying protein phosphorylation in micro-slices of rat brain by two-dimensional electrophoresis.

    abstract::Procedures are described for studying protein phosphorylation in 1 mm diameter micro-slices of rat brain tissue using two-dimensional electrophoresis as analytical tool. The activity of several protein phosphorylating systems, including a major system phosphorylating a 40 kDa substrate complex, was highly dependent on...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(88)90030-1

    authors: Rodnight R,Zamani R,Tweedale A

    更新日期:1988-05-01 00:00:00

  • MicroCT optimisation for imaging fascicular anatomy in peripheral nerves.

    abstract:BACKGROUND:Due to the lack of understanding of the fascicular organisation, vagus nerve stimulation (VNS) leads to unwanted off-target effects. Micro-computed tomography (microCT) can be used to trace fascicles from periphery and image fascicular anatomy. NEW METHOD:In this study, we present a simple and reproducible ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2020.108652

    authors: Thompson N,Ravagli E,Mastitskaya S,Iacoviello F,Aristovich K,Perkins J,Shearing PR,Holder D

    更新日期:2020-05-15 00:00:00

  • Advances in the automation of whole-cell patch clamp technology.

    abstract::Electrophysiology is the study of neural activity in the form of local field potentials, current flow through ion channels, calcium spikes, back propagating action potentials and somatic action potentials, all measurable on a millisecond timescale. Despite great progress in imaging technologies and sensor proteins, no...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.jneumeth.2019.108357

    authors: Suk HJ,Boyden ES,van Welie I

    更新日期:2019-10-01 00:00:00

  • Primary cell culture of adult zebrafish spinal neurons for electrophysiological studies.

    abstract:BACKGROUND:Zebrafish (Danio rerio) are growing in popularity as a vertebrate model organism for the study of spinal neurocircuitry and locomotion. While many studies have used the zebrafish model system for electrophysiological analyses in embryonic and larval stages, there is a growing interest in studying spinal circ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.04.011

    authors: Meade ME,Roginsky JE,Schulz JR

    更新日期:2019-07-01 00:00:00

  • Metabolic activity in antigenically identified neurons: a double labeling method for high-resolution 2-deoxyglucose and immunohistochemistry.

    abstract::The 2-deoxyglucose (2DG) histochemical method of Sokoloff et al. ((1977) J. Neurochem., 28: 897-916) has been widely used to map metabolic activity in the brain, but lacks sufficient resolution to view individual neurons. Modifications of the original method have achieved cellular resolution with emulsion autoradiogra...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(96)00063-5

    authors: McCasland JS

    更新日期:1996-09-01 00:00:00

  • An experimental paradigm to compare motor performance under laboratory and under everyday-like conditions.

    abstract::Research findings on human motor skills may not necessarily hold in everyday life, since laboratory and everyday scenarios typically differ with respect to the subjects' attention to the skill, their motivation to perform at their best, the goals they try to achieve, and the mode of movement initiation - extrinsic ver...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2010.08.005

    authors: Bock O,Hagemann A

    更新日期:2010-10-30 00:00:00

  • The LTP Program: a data acquisition program for on-line analysis of long-term potentiation and other synaptic events.

    abstract::The LTP Program is a stimulation, acquisition and on-line analysis program for studying long-term potentiation (LTP), long-term depression (LTD), and stimulus-evoked synaptic responses in general. The program is freely available from the website: www.ltp-program.com. It is a 32-bit DOS program that runs on Windows 3/9...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(01)00374-0

    authors: Anderson WW,Collingridge GL

    更新日期:2001-07-15 00:00:00

  • Method for assessing directional characteristics of non-uniformly sampled neural activity.

    abstract::We present a new analytical method for characterizing the directional tuning of neural data. The method is based on computing parameters associated with the geometric properties of solids, and provides an estimate of preferred direction in the context of non-uniform sampling of directions. Unlike optimization methods ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/s0165-0270(01)00492-7

    authors: Gribble PL,Scott SH

    更新日期:2002-01-30 00:00:00

  • Assessment of executive function in adolescence: a comparison of traditional and virtual reality tools.

    abstract::Paper-pencil type tests are traditionally used in the assessment of executive functions (EF); however, concerns have been raised as to whether these represent actual functioning in everyday life. Virtual reality (VR) environments offer a novel alternative for the assessment of cognitive function and therefore have the...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2013.07.005

    authors: Lalonde G,Henry M,Drouin-Germain A,Nolin P,Beauchamp MH

    更新日期:2013-09-30 00:00:00

  • Assessment of bursting activity and interspike intervals variability: a case study for methodological comparison.

    abstract::The detection and characterization of bursting activity remains a topic where no consensual definition has been reached so far. We compare here three different approaches of spike trains variability: statistical characterization (average frequency, coefficient of variation), burst detection (Poisson and rank surprise)...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2009.01.020

    authors: Robin K,Maurice N,Degos B,Deniau JM,Martinerie J,Pezard L

    更新日期:2009-04-30 00:00:00

  • A multiple-contact EMG recording array for mapping single muscle unit territories.

    abstract::The glycogen-depletion technique has become a well-established method for determining histologically the cross-sectional distribution of a single muscle unit. A major drawback of this method is its low yield of one depleted unit per experiment. Furthermore, this technique is particularly unsuited for determining the l...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(87)90108-7

    authors: Chanaud CM,Pratt CA,Loeb GE

    更新日期:1987-10-01 00:00:00

  • A systematic approach to selecting task relevant neurons.

    abstract:BACKGROUND:Since task related neurons cannot be specifically targeted during surgery, a critical decision to make is to select which neurons are task-related when performing data analysis. Including neurons unrelated to the task degrade decoding accuracy and confound neurophysiological results. Traditionally, task-rela...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2015.02.020

    authors: Kahn K,Saxena S,Eskandar E,Thakor N,Schieber M,Gale JT,Averbeck B,Eden U,Sarma SV

    更新日期:2015-04-30 00:00:00

  • Methods for detection of brain injury after photothrombosis-induced ischemia in mice: Characteristics and new aspects of their application.

    abstract:BACKGROUND:Photothrombosis is a minimally invasive method for induction of cortical ischemia. However, different ways of applying some methods to assess photothrombosis-induced damage need to be developed. NEW METHODS:We applied the tongue protrusion test and H&E staining of brain sections to detect ischemic damage af...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2019.108457

    authors: Galkov M,Gulyaev M,Kiseleva E,Andreev-Andrievskiy A,Gorbacheva L

    更新日期:2020-01-01 00:00:00

  • A correlation-matrix-based hierarchical clustering method for functional connectivity analysis.

    abstract::In this study, a correlation matrix based hierarchical clustering (CMBHC) method is introduced to extract multiple correlation patterns from resting-state functional magnetic resonance imaging (fMRI) data. It was applied to spontaneous fMRI signals acquired from anesthetized rats, and the results were then compared wi...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2012.08.016

    authors: Liu X,Zhu XH,Qiu P,Chen W

    更新日期:2012-10-15 00:00:00

  • Recording of spindle afferent discharge during hindlimb movements in spinalized turtles.

    abstract::The feasibility of spindle afferent recording during naturally or electrically induced hindlimb movements is demonstrated in the case of spinalized, decapitated turtles. Since these recordings are obtained from fine filaments of exposed dorsal roots, it is possible for the experimenter to select the afferents of inter...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(86)90144-5

    authors: Hasan Z,Sasaki SI

    更新日期:1986-02-01 00:00:00

  • Modeling the dopaminergic nerve terminal.

    abstract::A method is described for developing and evaluating models of neurochemical processes. Computer simulation and simplex optimization are used to examine a model of the dopaminergic nerve terminal of the rat striatum. In the model, synthesis, storage, release, uptake, and metabolism are described by a set of non-linear ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(88)90045-3

    authors: Justice JB Jr,Nicolaysen LC,Michael AC

    更新日期:1988-01-01 00:00:00

  • Constructing fMRI connectivity networks: a whole brain functional parcellation method for node definition.

    abstract:BACKGROUND:Functional Magnetic Resonance Imaging (fMRI) is used for exploring brain functionality, and recently it was applied for mapping the brain connection patterns. To give a meaningful neurobiological interpretation to the connectivity network, it is fundamental to properly define the network framework. In partic...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2014.03.004

    authors: Maggioni E,Tana MG,Arrigoni F,Zucca C,Bianchi AM

    更新日期:2014-05-15 00:00:00

  • A novel microsurgical nerve implantation technique preserving outer nerve layers.

    abstract::A novel epineural tube implantation paradigm in the adult rat was designed for the analysis of regulatory cell interactions in peripheral nerves and for the development of therapeutic implants. The aim was to allow the integration of synthetic regenerative structures and cells into the nerve interior while preserving ...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2010.04.007

    authors: Hajosch R,Grupp L,Nichterwitz S,Schlosshauer B

    更新日期:2010-06-15 00:00:00

  • High resolution autoradiography at the regional topographic level with [14C]2-deoxyglucose and [3H]2-deoxyglucose.

    abstract::After injection of 2-deoxyglucose (2-DG) labeled with tritium or carbon-14, autoradiograms were produced by thaw-mounting 4 micron frozen sections of rat brains on nuclear emulsion-coated slides. The results show that the distribution of radioactivity among different brain regions was similar and that the resolution a...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(87)90043-4

    authors: Duncan GE,Stumpf WE,Pilgrim C,Breese GR

    更新日期:1987-06-01 00:00:00

  • Quantitative and qualitative analysis of Wallerian degeneration using restricted axonal labelling in YFP-H mice.

    abstract::We investigated the usefulness of YFP-H transgenic mice [Neuron 28 (2000) 41] which express yellow fluorescent protein (YFP) in a restricted subset of neurons to study Wallerian degeneration in the PNS. Quantification of YFP positive axons and myelin basic protein (MBP) immunocytochemistry revealed that YFP was random...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/j.jneumeth.2003.10.016

    authors: Beirowski B,Berek L,Adalbert R,Wagner D,Grumme DS,Addicks K,Ribchester RR,Coleman MP

    更新日期:2004-03-15 00:00:00

  • Signal averaging by microcomputer using a program written in a high-level language.

    abstract::A program, written in the language Pascal, is described for signal averaging with a microcomputer. The program instructs the computer to acquire data from two channels on-line. For up to 3 channels of extracellular or intracellular recording analysed simultaneously, it was found not to be necessary to employ machine c...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(85)90006-8

    authors: Simmons PJ

    更新日期:1985-01-01 00:00:00

  • Advances in modelling alpha-synuclein-induced Parkinson's diseases in rodents: Virus-based models versus inoculation of exogenous preformed toxic species.

    abstract::Aggregates of alpha-synuclein (αSyn) have been described in Parkinson's disease (PD) patients, and recent evidence has suggested that the most toxic αSyn species in PD are small soluble aggregates including oligomers, prefibrils, protofibrils. The physiological function of αSyn is still highly debated, with a possible...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章,评审

    doi:10.1016/j.jneumeth.2020.108685

    authors: Carta AR,Boi L,Pisanu A,Palmas MF,Carboni E,De Simone A

    更新日期:2020-05-15 00:00:00

  • A microscopical assay using a densitometric application of image analysis to quantify neurotransmitter dynamics.

    abstract::We have attempted to demonstrate the technical requirements and performance of a microscopical assay using a densitometric application of image analysis to measure immunohistochemical stain intensity. Not surprisingly, the techniques required were more demanding than those used for the quantification of field and obje...

    journal_title:Journal of neuroscience methods

    pub_type: 杂志文章

    doi:10.1016/0165-0270(92)90048-i

    authors: Cowen T,Thrasivoulou C

    更新日期:1992-10-01 00:00:00