Alleles and haplotypes of the MHC-encoded ABC transporters TAP1 and TAP2.

Abstract:

:TAP1 and TAP2 are two major histocompatibility complex (MHC) genes, located between HLA-DP and -DQ, whose products form a transporter molecule involved in endogenous antigen processing. Polymorphic residues have been described in both genes and, in this study, we have identified another polymorphic site within the adenosine triphosphate (ATP)-binding domain of TAP2. We have used the amplification refractory mutation system (ARMS) polymerase chain reaction (PCR) to characterize TAP1 and TAP2 alleles and haplotypes in a reference panel of 115 homozygous typing cell lines. Of four possible TAP1 alleles, we observed three, and of eight possible TAP2 alleles, we observed five. Among 88 (homozygous typing cells) (HTCs) homozygous at HLA-DR, -DQ and -DP, 80 were also homozygous at TAP1 and TAP2. Of 27 HTCs homozygous at HLA-DR and -DQ, but heterozygous at -DP, 14 were homozygous at TAP1 or TAP2 and 13 heterozygous, consistent with recombination taking place either side of the TAP loci. Of the fifteen possible combinations of TAP1 and TAP2 alleles, we observed eleven, each at a frequency similar to that predicted by individual allele frequencies. In this ethnically heterogenous panel there is no indication that particular combinations of TAP1 and TAP2 have been maintained together.

journal_name

Immunogenetics

journal_title

Immunogenetics

authors

Powis SH,Tonks S,Mockridge I,Kelly AP,Bodmer JG,Trowsdale J

doi

10.1007/BF00216802

subject

Has Abstract

pub_date

1993-01-01 00:00:00

pages

373-80

issue

5

eissn

0093-7711

issn

1432-1211

journal_volume

37

pub_type

杂志文章
  • On being the right size: antibody repertoire formation in the mouse and human.

    abstract::The immune systems of all mammals include populations of B cells producing antibodies with incredibly diverse specificities. Repertoire diversity has been described as the "miracle of immunology," and it was long thought to be the result of essentially stochastic processes. Recently, however, analysis of high throughp...

    journal_title:Immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00251-017-1049-8

    authors: Collins AM,Jackson KJL

    更新日期:2018-03-01 00:00:00

  • Identification of the MHC class I B locus in cynomolgus monkeys.

    abstract::By determining the nucleotide sequences of more than 700 cDNA clones isolated from 16 cynomolgus monkeys, we identified 26 Mafa-B alleles. In addition, nine sequences with similarity to Mamu-I alleles were identified. Since multiple Mafa-B alleles were found in each individual, it was strongly suggested that the cynom...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-005-0782-6

    authors: Uda A,Tanabayashi K,Fujita O,Hotta A,Terao K,Yamada A

    更新日期:2005-05-01 00:00:00

  • Interleukin-17 and leptin genes polymorphisms and their levels in relation to recurrent pregnancy loss in Egyptian females.

    abstract::Recurrent pregnancy loss (RPL) is a common problem during early gestation. The aim of our study was to investigate the association of IL-17 F( rs763780), IL-17 A (rs2275913), and leptin (2548 G/A) gene polymorphisms with RPL in obese and lean Egyptian females, and to find out whether these gene polymorphisms affect th...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-015-0876-8

    authors: Zidan HE,Rezk NA,Alnemr AA,Moniem MI

    更新日期:2015-11-01 00:00:00

  • Polymorphism of IL-10 gene promoter region: association with T cell proliferative responses after acellular pertussis vaccination in adults.

    abstract::Individual variation in immune responses is always encountered after vaccination. This phenomenon is also seen after acellular pertussis vaccination. The aim of this present study was to investigate whether single nucleotide polymorphisms (SNPs) in the IL-10 gene promoter region (rs1800890, rs1800896, rs1800871), IL-1...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-016-0923-0

    authors: Gröndahl-Yli-Hannuksela K,Vahlberg T,Ilonen J,Mertsola J,He Q

    更新日期:2016-10-01 00:00:00

  • Evolution of epitopes on human and nonhuman primate lymphocyte cell surface antigens.

    abstract::The T- and B-cell surface polypeptides detected by an international workshop panel of 100 mouse monoclonal antibodies (M.Ab) were biochemically defined by radioimmunoprecipitation. Eight T-cell-associated molecules and eight B-cell-associated molecules were identified by multiple antibodies in the panel. Clusters of a...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00345968

    authors: Clark EA,Martin PJ,Hansen JA,Ledbetter JA

    更新日期:1983-01-01 00:00:00

  • Evolution of Crohn's disease-associated Nod2 mutations.

    abstract::Several lines of evidence have confirmed the importance of Nod2 mutations for disease susceptibility in Crohn's disease. For tracing Nod2 evolution, exons 4a, 4e, 8, and 12 mutations were screened in a collection of 1,064 DNA samples from 52 worldwide populations. The overall allele frequency was 7.5% for single nucle...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-008-0274-6

    authors: Gasche C,Nemeth M,Grundtner P,Willheim-Polli C,Ferenci P,Schwarzenbacher R

    更新日期:2008-02-01 00:00:00

  • Mouse serum amyloid P-component (SAP) levels controlled by a locus on chromosome 1.

    abstract::Recombinant inbred strains were used to demonstrate the existence of a major locus on chromosome 1, designated Sap, which controls the endogenous concentration of the mouse acute phase reactant, serum amyloid P-component (SAP). Levels of SAP were associated with alleles at the Ly-9 locus in two sets of RI strains: BXD...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00430920

    authors: Mortensen RF,Le PT,Taylor BA

    更新日期:1985-01-01 00:00:00

  • Signatures of historical selection on MHC reveal different selection patterns in the moor frog (Rana arvalis).

    abstract::MHC genes are key components in disease resistance and an excellent system for studying selection acting on genetic variation in natural populations. Current patterns of variation in MHC genes are likely to be influenced by past and ongoing selection as well as demographic fluctuations in population size such as those...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-017-1051-1

    authors: Cortázar-Chinarro M,Meyer-Lucht Y,Laurila A,Höglund J

    更新日期:2018-07-01 00:00:00

  • Evolutionary history of the Rh blood group-related genes in vertebrates.

    abstract::Rh and its homologous Rh50 gene products are considered to form heterotetramers on erythrocyte membranes. Rh protein has Rh blood group antigen sites, while Rh50 protein does not, and is more conserved than Rh protein. We previously determined both Rh and Rh50 gene cDNA coding regions from mouse and rat, and carried o...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510000202

    authors: Kitano T,Saitou N

    更新日期:2000-08-01 00:00:00

  • Allelic variants of the human MHC class I chain-related B gene (MICB).

    abstract::The human major histocompatibility complex (MHC) is located within a 4 megabase segment on chromosome 6p21.3. Recently, a highly divergent MHC class I chain-related gene family, MIC was identified within the class I region. The MICA and MICB genes in this family have unique patterns of tissue expression. The MICA gene...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050311

    authors: Ando H,Mizuki N,Ota M,Yamazaki M,Ohno S,Goto K,Miyata Y,Wakisaka K,Bahram S,Inoko H

    更新日期:1997-01-01 00:00:00

  • Evaluation of in vitro cytotoxic T lymphocyte assays as a predictive test for the occurrence of graft vs host disease.

    abstract::The potential value of in vitro cytotoxic T lymphocyte (CTL) assays for predicting the occurrence of graft vs host disease (GVHD) following allogeneic bone marrow transplantation was evaluated in 12 mouse donor-host combinations associated with various degrees of GVHD. These donor-host combinations were selected after...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00215256

    authors: Fontaine P,Langlais J,Perreault C

    更新日期:1991-01-01 00:00:00

  • Membrane expression of HLA-Cw4 free chains in activated T cells of transgenic mice.

    abstract::Transgenic mice were produced in which human HLA-Cw4 is stably integrated, behaves as a single Mendelian trait, and, being under the transcriptional control of human CD2, is selectively and efficiently expressed in T lymphocytes. These mice were used as a model system to determine whether HLA-type C molecules can be e...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00179398

    authors: Aiuti A,Forte P,Simeoni L,Lino M,Pozzi L,Fattorossi A,Giacomini P,Ginelli E,Beretta A,Siccardi A

    更新日期:1995-01-01 00:00:00

  • The H-2dm1 mutation and Qa antigens.

    abstract::The effect of the H-2dm1 mutation on Qa-m2 expression was examined. The mutant strain B10.D2-H-2dm1 showed a fourfold increase in Qa-m2 expression when compared with the parental strain B10.D2. Qa-m2 molecules immunoprecipitated from B10.D2-H-2dm1, C57BL/10, and B10.D2 spleen cells were identical by two-dimensional (2...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00345969

    authors: Hogarth PM,Walker ID,Rigby AJ,McKenzie IF

    更新日期:1983-01-01 00:00:00

  • The major histocompatibility class I locus in Atlantic salmon (Salmo salar L.): polymorphism, linkage analysis and protein modelling.

    abstract::A cDNA library screening using the conserved exon 4 of Atlantic salmon Mhc class I as probe provided the basis for a study on Mhc class I polymorphism in a breeding population. Twelve different alleles were identified in the 82 dams and sires studied. No individual expressed more than two alleles, which corresponded t...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-002-0499-8

    authors: Grimholt U,Drabløs F,Jørgensen SM,Høyheim B,Stet RJ

    更新日期:2002-11-01 00:00:00

  • Tissue distribution and polymorphism of minor histocompatibility antigens involved in GVHR.

    abstract::A graft-vs-host reaction (GVHR) develops after major histocompatibility complex (MHC)-compatible bone marrow-transplantation. In the genetic combination studied, B10.D2 donor cells differed from those of (DBA/2 x B10.D2)F1 mice for multiple DBA/2 minor histocompatibility antigens (mHAg) and minor lymphocyte stimulatin...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00241258

    authors: Miconnet I,de la Selle V,Tucek C,Huchet R,Bonardelle D,Bruley-Rosset M

    更新日期:1994-01-01 00:00:00

  • Major histocompatibility complex variation and the evolution of resistance to amphibian chytridiomycosis.

    abstract::Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd), has been implicated in population declines and species extinctions of amphibians around the world. Susceptibility to the disease varies both within and among species, most likely attributable to heritable immunogenetic variation. Anal...

    journal_title:Immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00251-017-1008-4

    authors: Fu M,Waldman B

    更新日期:2017-08-01 00:00:00

  • Mapping of susceptibility and protective loci for acute GVHD in unrelated HLA-matched bone marrow transplantation donors and recipients using 155 microsatellite markers on chromosome 22.

    abstract::Despite matching donors and recipients for the human leukocyte antigens (HLAs) expressed by the major histocompatibility genomic region of the short arm of chromosome 6, several recipients still develop acute graft-versus-host disease (aGVHD) after bone marrow transplantation (BMT). This is possibly due to non-HLA gen...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-006-0186-2

    authors: Kikuchi T,Naruse TK,Onizuka M,Li S,Kimura T,Oka A,Morishima Y,Kulski JK,Ichimiya S,Sato N,Inoko H

    更新日期:2007-02-01 00:00:00

  • Copy number and nucleotide variation of the LILR family of myelomonocytic cell activating and inhibitory receptors.

    abstract::Leukocyte immunoglobulin-like receptors (LILR) are cell surface molecules that regulate the activities of myelomonocytic cells through the balance of inhibitory and activation signals. LILR genes are located within the leukocyte receptor complex (LRC) on chromosome 19q13.4 adjacent to KIR genes, which are subject to a...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-013-0742-5

    authors: López-Álvarez MR,Jones DC,Jiang W,Traherne JA,Trowsdale J

    更新日期:2014-02-01 00:00:00

  • Genetic control of rat heart allograft rejection: effect of different MHC and non-MHC incompatibilities.

    abstract::We investigated the genetic control of heterotopic heart allograft rejection using a family of standard inbred, major histocompatibility complex (MHC)-congenic, and intra-MHC recombinant rat strains. Gene products of the various regions within the rat MHC differed markedly in their capacity to induce rejection. Isolat...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF02421535

    authors: Klempnauer J,Steiniger B,Lück R,Günther E

    更新日期:1989-01-01 00:00:00

  • Ly49A allelic variation and MHC class I specificity.

    abstract::The Ly49 family of natural killer (NK) cell receptors is encoded by a polygenic genetic locus. Allelic forms have been described and their expression appears to be regulated. The best-characterized Ly49 molecule, the C57BL/6 form of Ly49A, is an NK cell inhibitory receptor that binds H2Dd. To determine whether differe...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510100355

    authors: Mehta IK,Wang J,Roland J,Margulies DH,Yokoyama WM

    更新日期:2001-09-01 00:00:00

  • Complementary DNA sequences encoding the rat MHC class II RT1-Bu and RT1-Du alpha and beta chains.

    abstract::The rat major histocompatibility complex loci RT1-B and RT1-D are equivalent to the human leucocyte antigens HLA-DQ and HLA-DR respectively. Here we describe the complementary DNA (cDNA) sequence encoding the alpha and beta chains of both the RT1-B and RT1-D locus genes of the rat RT1u haplotype. We have found entire ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-003-0584-7

    authors: Easterfield AJ,Bradley JA,Bolton EM

    更新日期:2003-08-01 00:00:00

  • Strain-dependent migration of lymphocytes to the vaginal mucosa after peripheral immunization.

    abstract::We have previously demonstrated a genetic predisposition among mice regarding their ability to be protected against vaginal candidiasis after peripheral immunization. Both BALB/c and (BALB/cx C57BL/6) F1 mice are protected against vaginal candidiasis after subcutaneous immunization with Candida albicans extract and C5...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050581

    authors: Mulero-Marchese RD,Blank KJ,Sieck TG

    更新日期:1999-10-01 00:00:00

  • Structure and diversity of the heavy chain VDJ junctions in the developing Mexican axolotl.

    abstract::The immune capacity of young and adult axolotls (Ambystoma mexicanum) was evaluated by examining the combinatorial and junctional diversity of the VH chain. A large number of VDJ rearrangements isolated from 2.5-, 3.5-, 10-, and 24-month-old animals were sequenced. Six JH segments were identified with the canonical st...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050294

    authors: Golub R,Fellah JS,Charlemagne J

    更新日期:1997-01-01 00:00:00

  • Copy number variation and association over T-cell receptor genes--influence of DNA source.

    abstract::Genomic copy number variants (CNVs) are a common, heritable source of inter-individual differences in genomic sequence. Their influence on phenotypic variability and their involvement in the pathogenesis of several common diseases is well established and the object of many current studies. In the course of examining C...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0459-7

    authors: Schwienbacher C,De Grandi A,Fuchsberger C,Facheris MF,Svaldi M,Wjst M,Pramstaller PP,Hicks AA

    更新日期:2010-08-01 00:00:00

  • Comparative analysis of nonaspanin protein sequences and expression studies in zebrafish.

    abstract::Nonaspanins constitute a family of proteins, also called TM9SF, characterized by a large non-cytoplasmic domain and nine putative transmembrane domains. This family is highly conserved through evolution and comprises three members in Saccharomyces cerevisiae, Dictyostelium discoideum, and Drosophila melanogaster, and ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0472-x

    authors: Pruvot B,Laurens V,Salvadori F,Solary E,Pichon L,Chluba J

    更新日期:2010-10-01 00:00:00

  • Analysis of three distinct Ly6-A-related cDNA sequences isolated from rat kidney.

    abstract::Mouse Ly6A and Ly6C cDNA probes were hybridized to total RNA of rat tissues and, as in mouse, the highest level of Ly6-related transcripts was detected in kidney. Therefore, Ly6-related cDNA clones were isolated from a commercial rat kidney cDNA library in lambda gt11. Four of these (RK3, RK6, RK10, and RK11) have bee...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00661220

    authors: Friedman S,Palfree RG,Sirlin S,Hämmerling U

    更新日期:1990-01-01 00:00:00

  • Sequence analysis and HLA-DR genotyping of a novel HLA-DRw14 allele.

    abstract::Analysis of a Japanese population by oligonucleotide genotyping revealed that one Japanese HLA-DRw14 allele had a DRB1 genotype different from that of the known HLA-DRw14-related alleles, DRB1*1401 (DRw14-Dw9) and DRB1*1402 (DRw14-Dw16). The second exon of the DRB1 gene of the novel DRw14 allele (designated DRB1-14c) ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00211645

    authors: Obata F,Ito I,Ito K,Abe A,Ohkubo M,Onda K,Yang YG,Watanabe K,Kashiwagi N

    更新日期:1990-01-01 00:00:00

  • Polymorphic SVA retrotransposons at four loci and their association with classical HLA class I alleles in Japanese, Caucasians and African Americans.

    abstract::Polymorphic insertion frequencies of the retrotransposons known as the "SVA" elements were investigated at four loci in the MHC class I genomic region to determine their allele and haplotype frequencies and associations with the HLA-A, -B or -C genes for 100 Japanese, 100 African Americans, 174 Australian Caucasians a...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0427-2

    authors: Kulski JK,Shigenari A,Inoko H

    更新日期:2010-04-01 00:00:00

  • Qa alloantigen expression on functional T lymphocytes from spleen and thymus.

    abstract::The cell-surface expression of the class I alloantigen Qa-2 was analyzed on resting and activated spleen and thymus cells using cytotoxic elimination and immunofluorescence and flow cytometry. Spleen cells activated by mitogens or alloantigen were homogeneously positive for cell surface Qa-2, but activated splenic T c...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00377958

    authors: Rabinowitz R,Sharrow SO,Chatterjee-Das S,Rogers MJ,Sachs DH

    更新日期:1986-01-01 00:00:00

  • A new major histocompatibility complex class I b gene expressed in the mouse blastocyst and placenta.

    abstract::Because of the role major histocompatibility complex (MHC) class I b molecules may play during mouse embryonic development, we thought it would be interesting to search for additional MHC class I b molecules that might be expressed in preimplantation embryos, and in particular in the trophoblastic lineage. We therefor...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050178

    authors: Sipes SL,Medaglia MV,Stabley DL,DeBruyn CS,Alden MS,Catenacci V,Landel CP

    更新日期:1996-01-01 00:00:00