Complete nucleotide sequence of simian endogenous type D retrovirus with intact genome organization: evidence for ancestry to simian retrovirus and baboon endogenous virus.

Abstract:

:A complete endogenous type D viral genome has been isolated from a baboon genomic library. The provirus, simian endogenous retrovirus (SERV), is 8,393 nucleotides long and contains two long terminal repeats and complete genes for gag, pro, pol, and env. The primer binding site is complementary to tRNA(Lys)3, like in lentiviruses. The env GP70 protein is highly homologous to that of baboon endogenous virus (BaEV). PCR analysis of primate DNA showed that related proviral sequences are present in Old World monkeys of the subfamily Cercopithecinae but not in apes and humans. Analysis of virus and host sequences indicated that the proviral genomes were inherited from a common ancestor. Comparison of the evolution of BaEV, exogenous simian retrovirus types 1 to 3 (SRV1 to SRV3), and SERV suggests that SERV is ancestral to both BaEV and the SRVs.

journal_name

J Virol

journal_title

Journal of virology

authors

van der Kuyl AC,Mang R,Dekker JT,Goudsmit J

doi

10.1128/JVI.71.5.3666-3676.1997

subject

Has Abstract

pub_date

1997-05-01 00:00:00

pages

3666-76

issue

5

eissn

0022-538X

issn

1098-5514

journal_volume

71

pub_type

杂志文章
  • Complete genome sequence of duck Tembusu virus, isolated from Muscovy ducks in southern China.

    abstract::We report here the complete genomic sequence of the duck Tembusu virus (DTMUV) WJ-1 strain, isolated from Muscovy ducks. This is the first complete genome sequence of DTMUV reported in southern China. Compared with the other strains (TA, GH-2, YY5, and ZJ-407) that were previously found in eastern China, WJ-1 bears a ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02361-12

    authors: Zhu W,Chen J,Wei C,Wang H,Huang Z,Zhang M,Tang F,Xie J,Liang H,Zhang G,Su S

    更新日期:2012-12-01 00:00:00

  • Four Amino Acid Changes in HIV-2 Protease Confer Class-Wide Sensitivity to Protease Inhibitors.

    abstract:UNLABELLED:Protease is essential for retroviral replication, and protease inhibitors (PI) are important for treating HIV infection. HIV-2 exhibits intrinsic resistance to most FDA-approved HIV-1 PI, retaining clinically useful susceptibility only to lopinavir, darunavir, and saquinavir. The mechanisms for this resistan...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01772-15

    authors: Raugi DN,Smith RA,Gottlieb GS,University of Washington-Dakar HIV-2 Study Group.

    更新日期:2015-11-11 00:00:00

  • Active-site mutations in the South african human immunodeficiency virus type 1 subtype C protease have a significant impact on clinical inhibitor binding: kinetic and thermodynamic study.

    abstract::Human immunodeficiency virus (HIV) infections in sub-Saharan Africa represent about 56% of global infections. Study of active-site mutations (the V82A single mutation and the V82F I84V double mutation) in the less-studied South African HIV type 1 subtype C (C-SA) protease indicated that neither mutation had a signific...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00726-08

    authors: Mosebi S,Morris L,Dirr HW,Sayed Y

    更新日期:2008-11-01 00:00:00

  • Rotavirus infection increases intestinal motility but not permeability at the onset of diarrhea.

    abstract:UNLABELLED:The disease mechanisms associated with onset and secondary effects of rotavirus (RV) diarrhea remain to be determined and may not be identical. In this study, we investigated whether onset of RV diarrhea is associated with increased intestinal permeability and/or motility. To study the transit time, fluoresc...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02927-13

    authors: Istrate C,Hagbom M,Vikström E,Magnusson KE,Svensson L

    更新日期:2014-03-01 00:00:00

  • Nef-induced CD4 endocytosis in human immunodeficiency virus type 1 host cells: role of p56lck kinase.

    abstract::Human immunodeficiency virus type 1 (HIV-1) Nef interferes with the endocytic machinery to modulate the cell surface expression of CD4. However, the basal trafficking of CD4 is governed by different rules in the target cells of HIV-1: whereas CD4 is rapidly internalized from the cell surface in myeloid cells, CD4 is s...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01648-08

    authors: Laguette N,Brégnard C,Bouchet J,Benmerah A,Benichou S,Basmaciogullari S

    更新日期:2009-07-01 00:00:00

  • Characterization of a temperature-sensitive influenza B virus mutant defective in neuraminidase.

    abstract::ts5, a temperature-sensitive mutant of influenza B virus, belongs to one of seven recombination groups. When the mutant infected MDCK cells at the nonpermissive temperature (37.5 degrees C), infectious virus was produced at very low levels compared with the yield at the permissive temperature (32 degrees C) and hemagg...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.6.3264-3273.1993

    authors: Shibata S,Yamamoto-Goshima F,Maeno K,Hanaichi T,Fujita Y,Nakajima K,Imai M,Komatsu T,Sugiura S

    更新日期:1993-06-01 00:00:00

  • In utero infection by porcine reproductive and respiratory syndrome virus is sufficient to increase susceptibility of piglets to challenge by Streptococcus suis type II.

    abstract::Porcine reproductive and respiratory syndrome (PRRS) consistently elevates the frequency of disease and mortality in young pigs. Many different secondary bacterial diseases occur in PRRS virus (PRRSV)-infected pigs. However, to date, establishing a reproducible experimental model of PRRSV infection in weaned pigs, wit...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.10.4889-4895.2001

    authors: Feng W,Laster SM,Tompkins M,Brown T,Xu JS,Altier C,Gomez W,Benfield D,McCaw MB

    更新日期:2001-05-01 00:00:00

  • Temporal distribution of transmissible mink encephalopathy virus in mink inoculated subcutaneously.

    abstract::Information was sought on the temporal distribution of transmissible mink encephalopathy virus in royal pastel mink inoculated subcutaneously with 10(3.0) 50% intracerebral lethal doses of the Idaho strain. As determined by intracerebral assay in mink, extremely little replication of the virus occurred during the prec...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.10.3235-3240.1987

    authors: Hadlow WJ,Race RE,Kennedy RC

    更新日期:1987-10-01 00:00:00

  • Infectious and whole inactivated simian immunodeficiency viruses interact similarly with primate dendritic cells (DCs): differential intracellular fate of virions in mature and immature DCs.

    abstract::As potential targets for human immunodeficiency virus type 1 and simian immunodeficiency virus (HIV-1 and SIV), dendritic cells (DCs) likely play a significant role in the onset and spread of infection as well as in the induction of antiviral immunity. Using the SIV-macaque system to study the very early events in DC-...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.6.2936-2951.2002

    authors: Frank I,Piatak M Jr,Stoessel H,Romani N,Bonnyay D,Lifson JD,Pope M

    更新日期:2002-03-01 00:00:00

  • Helper virus-independent transcription and multimerization of a satellite RNA associated with cucumber mosaic virus.

    abstract::Satellite RNAs are the smallest infectious agents whose replication is thought to be completely dependent on their helper virus (HV). Here we report that, when expressed autonomously in the absence of HV, a variant of satellite RNA (satRNA) associated with Cucumber mosaic virus strain Q (Q-satRNA) has a propensity to ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00018-12

    authors: Choi SH,Seo JK,Kwon SJ,Rao AL

    更新日期:2012-05-01 00:00:00

  • Epstein-Barr Virus Oncoprotein LMP1 Mediates Epigenetic Changes in Host Gene Expression through PARP1.

    abstract:UNLABELLED:The latent infection of Epstein-Barr virus (EBV) is associated with 1% of human cancer incidence. Poly(ADP-ribosyl)ation (PARylation) is a posttranslational modification catalyzed by poly(ADP-ribose) polymerases (PARPs) that mediate EBV replication during latency. In this study, we detail the mechanisms that...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01180-16

    authors: Martin KA,Lupey LN,Tempera I

    更新日期:2016-09-12 00:00:00

  • Specificities of monoclonal and polyclonal antibodies that inhibit adsorption of herpes simplex virus to cells and lack of inhibition by potent neutralizing antibodies.

    abstract::Polyclonal and monoclonal antibodies to individual herpes simplex virus (HSV) glycoproteins were tested for ability to inhibit adsorption of radiolabeled HSV type 1 (HSV-1) strain HFEMsyn [HSV-1(HFEM)syn] to HEp-2 cell monolayers. Polyclonal rabbit antibodies specific for glycoprotein D (gD) or gC and three monoclonal...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.55.2.475-482.1985

    authors: Fuller AO,Spear PG

    更新日期:1985-08-01 00:00:00

  • cDNA sequence analysis confirms that the etiologic agent of callitrichid hepatitis is lymphocytic choriomeningitis virus.

    abstract::Callitrichid hepatitis is an infection of New World primates caused by an arenavirus, currently referred to as callitrichid hepatitis virus, that is closely related to lymphocytic choriomeningitis virus (LCMV). We have cloned and sequenced the GP-C gene of callitrichid hepatitis virus and found that the cDNA sequence ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.2.1349-1352.1995

    authors: Stephensen CB,Park JY,Blount SR

    更新日期:1995-02-01 00:00:00

  • Murine AIDS is initiated in the lymph nodes draining the site of inoculation, and the infected B cells influence T cells located at distance, in noninfected organs.

    abstract::The infection of cells which belong to the B-cell lineage is thought to be the primary event leading to the phenotypic and functional alterations seen in the murine AIDS (M. Huang, C. Simard, D. Kay, and P. Jolicoeur, J. Virol. 65:6562-6571, 1991). Using in situ hybridization, we studied the time course of the anatomi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.68.3.1903-1912.1994

    authors: Simard C,Huang M,Jolicoeur P

    更新日期:1994-03-01 00:00:00

  • Intracellular forms of simian virus 40 nucleoprotein complexes. IV. Micrococcal nuclease digestion.

    abstract::The structures of DNAs present in various intracellular forms of simian virus 40 (SV40) nucleoprotein complexes were analyzed by micrococcal nuclease digestion. The results showed that the 70S SV40 chromatin was completely sensitive to nuclease digestion, whereas CsCl gradient-purified mature virion was completely res...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.44.2.603-609.1982

    authors: Coca-Prados M,Yu HY,Hsu MT

    更新日期:1982-11-01 00:00:00

  • Evidence that a capped oligoribonucleotide is the primer for duck hepatitis B virus plus-strand DNA synthesis.

    abstract::The plus strand of virion DNA of duck hepatitis B virus possessed, at its 5' terminus, a capped oligoribonucleotide 18 to 19 bases in length. This oligoribonucleotide had a unique 5' end, the heterogeneity in length reflecting two distinct junctions with plus-strand DNA that were 1 base apart. The sequence of the RNA ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.57.1.229-236.1986

    authors: Lien JM,Aldrich CE,Mason WS

    更新日期:1986-01-01 00:00:00

  • Identification of a suppressor mutation that improves the yields of hexon-modified adenovirus vectors.

    abstract::We have generated hexon-modified adenovirus serotype 5 (Ad5) vectors that are not neutralized by Ad5-specific neutralizing antibodies in mice. These vectors are attractive for the advancement of vaccine products because of their potential for inducing robust antigen-specific immune responses in people with prior expos...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00462-13

    authors: Bruder JT,Chen P,Semenova E,Thomas CA,Konovalova S,Ekberg G,Ettyreddy D,McVey D,Gall JG,King CR,Brough DE

    更新日期:2013-09-01 00:00:00

  • Two novel simian arteriviruses in captive and wild baboons (Papio spp.).

    abstract:UNLABELLED:Since the 1960s, simian hemorrhagic fever virus (SHFV; Nidovirales, Arteriviridae) has caused highly fatal outbreaks of viral hemorrhagic fever in captive Asian macaque colonies. However, the source(s) of these outbreaks and the natural reservoir(s) of this virus remain obscure. Here we report the identifica...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02203-14

    authors: Bailey AL,Lauck M,Sibley SD,Pecotte J,Rice K,Weny G,Tumukunde A,Hyeroba D,Greene J,Correll M,Gleicher M,Friedrich TC,Jahrling PB,Kuhn JH,Goldberg TL,Rogers J,O'Connor DH

    更新日期:2014-11-01 00:00:00

  • Potassium ion channels of Chlorella viruses cause rapid depolarization of host cells during infection.

    abstract::Previous studies have established that chlorella viruses encode K(+) channels with different structural and functional properties. In the current study, we exploit the different sensitivities of these channels to Cs(+) to determine if the membrane depolarization observed during virus infection is caused by the activit...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.80.5.2437-2444.2006

    authors: Frohns F,Käsmann A,Kramer D,Schäfer B,Mehmel M,Kang M,Van Etten JL,Gazzarrini S,Moroni A,Thiel G

    更新日期:2006-03-01 00:00:00

  • Association of cap-binding protein with eucaryotic initiation factor 3 in initiation factor preparations from uninfected and poliovirus-infected HeLa cells.

    abstract::Extracts from poliovirus-infected HeLa cells are unable to translate vesicular stomatitis virus or cellular mRNAs in vitro, probably reflecting the poliovirus-induced inhibition of host cell protein synthesis which occurs in vivo. Crude initiation factors from uninfected HeLa cells are able to restore translation of v...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.42.1.200-207.1982

    authors: Hansen J,Etchison D,Hershey JW,Ehrenfeld E

    更新日期:1982-04-01 00:00:00

  • Molecular evolution and circulation patterns of human respiratory syncytial virus subgroup a: positively selected sites in the attachment g glycoprotein.

    abstract::Human respiratory syncytial virus (HRSV) is the most common etiological agent of acute lower respiratory tract disease in infants and can cause repeated infections throughout life. In this study, we have analyzed nucleotide sequences encompassing 629 bp at the carboxy terminus of the G glycoprotein gene for HRSV subgr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.78.9.4675-4683.2004

    authors: Zlateva KT,Lemey P,Vandamme AM,Van Ranst M

    更新日期:2004-05-01 00:00:00

  • Transient induction of cyclin T1 during human macrophage differentiation regulates human immunodeficiency virus type 1 Tat transactivation function.

    abstract::The human immunodeficiency virus type 1 (HIV-1) Tat protein is essential for viral replication and stimulates transcription of the integrated provirus by recruiting the kinase complex TAK/P-TEFb, composed of cyclin T1 (CycT1) and Cdk9, to the viral TAR RNA element. TAK/P-TEFb phosphorylates the RNA polymerase II compl...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.21.10579-10587.2002

    authors: Liou LY,Herrmann CH,Rice AP

    更新日期:2002-11-01 00:00:00

  • Zinc Finger-Containing Cellular Transcription Corepressor ZBTB25 Promotes Influenza Virus RNA Transcription and Is a Target for Zinc Ejector Drugs.

    abstract::Influenza A virus (IAV) replication relies on an intricate interaction between virus and host cells. How the cellular proteins are usurped for IAV replication remains largely obscure. The aim of this study was to search for novel and potential cellular factors that participate in IAV replication. ZBTB25, a transcripti...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00842-17

    authors: Chen SC,Jeng KS,Lai MMC

    更新日期:2017-09-27 00:00:00

  • APOBEC3G contributes to HIV-1 variation through sublethal mutagenesis.

    abstract::The mammalian APOBEC3 proteins are an important component of the cellular innate immune response to retroviral infection. APOBEC3G can extinguish HIV-1 infectivity by its incorporation into virus particles and subsequent cytosine deaminase activity that attacks the nascent viral cDNA during reverse transcription, caus...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00056-10

    authors: Sadler HA,Stenglein MD,Harris RS,Mansky LM

    更新日期:2010-07-01 00:00:00

  • Replication of Small Ruminant Lentiviruses in Aluminum Hydroxide-Induced Granulomas in Sheep: a Potential New Factor for Viral Dissemination.

    abstract::Aluminum (Al)-based salts are widely used adjuvants in ruminants and other species to strengthen the immune response elicited against vaccine antigen(s). However, they can lead to the formation of long-lasting granulomas composed of abundant activated macrophages. Small ruminant lentiviruses (SRLV) are widely distribu...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01859-20

    authors: Echeverría I,de Miguel R,Asín J,Rodríguez-Largo A,Fernández A,Pérez M,de Andrés D,Luján L,Reina R

    更新日期:2020-12-22 00:00:00

  • Infection by retroviral vectors outside of their host range in the presence of replication-defective adenovirus.

    abstract::Retrovirus infection is normally limited to cells within a specific host range which express a cognate receptor that is recognized by the product of the env gene. We describe retrovirus infection of cells outside of their normal host range when the infection is performed in the presence of a replication-defective aden...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.3.1887-1894.1995

    authors: Adams RM,Wang M,Steffen D,Ledley FD

    更新日期:1995-03-01 00:00:00

  • Investigation of the susceptibility of human cell lines to bovine herpesvirus 4 infection: demonstration that human cells can support a nonpermissive persistent infection which protects them against tumor necrosis factor alpha-induced apoptosis.

    abstract::Bovine herpesvirus 4 (BoHV-4) is a gammaherpesvirus that has a worldwide distribution in the population of cattle. Many factors make human contamination by BoHV-4 likely to occur. In this study, we performed in vitro experiments to assess the risk and the consequences of human infection by BoHV-4. First, by using a re...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.78.5.2336-2347.2004

    authors: Gillet L,Minner F,Detry B,Farnir F,Willems L,Lambot M,Thiry E,Pastoret PP,Schynts F,Vanderplasschen A

    更新日期:2004-03-01 00:00:00

  • Breakdown and exclusion of superinfecting T-even bacteriophage in Escherichia coli.

    abstract::In bacterial strains containing the deoxyribonuclease endonuclease I (endonuclease I(+) strains), 70 to 80% of the injected superinfecting T-even phage deoxyribonucleic acid (DNA) is rapidly degraded to oligonucleotides having an average chain length of 8, the same value as that obtained by endonuclease I digestion of...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.8.6.869-886.1971

    authors: Anderson CW,Eigner J

    更新日期:1971-12-01 00:00:00

  • Association between latent proviral characteristics and immune activation in antiretrovirus-treated human immunodeficiency virus type 1-infected adults.

    abstract:UNLABELLED:Generalized immune activation during HIV infection is associated with an increased risk of cardiovascular disease, neurocognitive disease, osteoporosis, metabolic disorders, and physical frailty. The mechanisms driving this immune activation are poorly understood, particularly for individuals effectively tre...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01257-14

    authors: Liang EC,Sceats L,Bayless NL,Strauss-Albee DM,Kubo J,Grant PM,Furman D,Desai M,Katzenstein DA,Davis MM,Zolopa AR,Blish CA

    更新日期:2014-08-01 00:00:00

  • Full genomic sequence of the prototype strain (M64) of Rio Bravo virus.

    abstract::Rio Bravo virus (RBV) is a member of the family Flaviviridae, genus Flavivirus. It belongs to a group of viruses in the genus with no known vector. In this report, we analyze the complete genome of the prototype RBV, strain M64. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00331-12

    authors: Volkova E,Tesh RB,Monath TP,Vasilakis N

    更新日期:2012-04-01 00:00:00