Molecular evolution and circulation patterns of human respiratory syncytial virus subgroup a: positively selected sites in the attachment g glycoprotein.

Abstract:

:Human respiratory syncytial virus (HRSV) is the most common etiological agent of acute lower respiratory tract disease in infants and can cause repeated infections throughout life. In this study, we have analyzed nucleotide sequences encompassing 629 bp at the carboxy terminus of the G glycoprotein gene for HRSV subgroup A strains isolated over 47 years, including 112 Belgian strains isolated over 19 consecutive years (1984 to 2002). By using a maximum likelihood method, we have tested the presence of diversifying selection and identified 13 positively selected sites with a posterior probability above 0.5. The sites under positive selection correspond to sites of O glycosylation or to amino acids that were previously described as monoclonal antibody-induced in vitro escape mutants. Our findings suggest that the evolution of subgroup A HRSV G glycoprotein is driven by immune pressure operating in certain codon positions located mainly in the second hypervariable region of the ectodomain. Phylogenetic analysis revealed the prolonged cocirculation of two subgroup A lineages among the Belgian population and the possible extinction of three other lineages. The evolutionary rate of HRSV subgroup A isolates was estimated to be 1.83 x 10(-3) nucleotide substitutions/site/year, projecting the most recent common ancestor back to the early 1940s.

journal_name

J Virol

journal_title

Journal of virology

authors

Zlateva KT,Lemey P,Vandamme AM,Van Ranst M

doi

10.1128/jvi.78.9.4675-4683.2004

subject

Has Abstract

pub_date

2004-05-01 00:00:00

pages

4675-83

issue

9

eissn

0022-538X

issn

1098-5514

journal_volume

78

pub_type

杂志文章
  • Magnitude and frequency of cytotoxic T-lymphocyte responses: identification of immunodominant regions of human immunodeficiency virus type 1 subtype C.

    abstract::A systematic analysis of immune responses on a population level is critical for a human immunodeficiency virus type 1 (HIV-1) vaccine design. Our studies in Botswana on (i) molecular analysis of the HIV-1 subtype C (HIV-1C) epidemic, (ii) frequencies of major histocompatibility complex class I HLA types, and (iii) cyt...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.20.10155-10168.2002

    authors: Novitsky V,Cao H,Rybak N,Gilbert P,McLane MF,Gaolekwe S,Peter T,Thior I,Ndung'u T,Marlink R,Lee TH,Essex M

    更新日期:2002-10-01 00:00:00

  • Very few substitutions in a germ line antibody are required to initiate significant domain exchange.

    abstract::2G12 is a broadly neutralizing anti-HIV-1 monoclonal human IgG1 antibody reactive with a high-mannose glycan cluster on the surface of glycoprotein gp120. A key feature of this very highly mutated antibody is domain exchange of the heavy-chain variable region (V(H)) with the V(H) of the adjacent Fab of the same immuno...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01111-10

    authors: Huber M,Le KM,Doores KJ,Fulton Z,Stanfield RL,Wilson IA,Burton DR

    更新日期:2010-10-01 00:00:00

  • cis-Acting sequences required for simian foamy virus type 1 vectors.

    abstract::We have constructed a series of vectors based on simian foamy virus type 1 (SFV-1) to define the minimum cis-acting elements required for gene transfer. To characterize these vectors, we inserted the coding sequence of the bacterial lacZ gene linked to the cytomegalovirus immediate-early gene promoter. Introduction of...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.4.3451-3454.1998

    authors: Wu M,Chari S,Yanchis T,Mergia A

    更新日期:1998-04-01 00:00:00

  • Localization of a binding site for herpes simplex virus glycoprotein D on herpesvirus entry mediator C by using antireceptor monoclonal antibodies.

    abstract::The human herpesvirus entry mediator C (HveC), also known as the poliovirus receptor-related protein 1 (PRR1) and as nectin-1, allows the entry of herpes simplex virus type 1 (HSV-1) and HSV-2 into mammalian cells. The interaction of virus envelope glycoprotein D (gD) with such a receptor is an essential step in the p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.23.10863-10872.2000

    authors: Krummenacher C,Baribaud I,Ponce de Leon M,Whitbeck JC,Lou H,Cohen GH,Eisenberg RJ

    更新日期:2000-12-01 00:00:00

  • Replacement of the Epstein-Barr virus plasmid with the EBER plasmid in Burkitt's lymphoma cells.

    abstract::Transfection of an Epstein-Barr virus (EBV)-encoded plasmid containing EBER caused a substantial decrease in the level of plasmid containing EBV in Akata and Mutu Burkitt's lymphoma (BL) lines, but failed to do so in other BL lines. The results suggest that EBER could replace the role of EBV, but other EBV products al...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.20.9977-9982.2001

    authors: Maruo S,Nanbo A,Takada K

    更新日期:2001-10-01 00:00:00

  • Cys residues of the hepatitis B virus capsid protein are not essential for the assembly of viral core particles but can influence their stability.

    abstract::In the spherical capsid of hepatitis B virus (HBV), intermolecular disulfide bonds cross-link the approximately 180 p21.5 capsid protein subunits into a stable lattice. In this study, we used mutant capsid proteins to investigate the role that disulfide bonds and the four p21.5 Cys residues (positions 48, 61, 107, and...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.9.5393-5398.1992

    authors: Zhou S,Standring DN

    更新日期:1992-09-01 00:00:00

  • The chicken c-fos gene: cloning and nucleotide sequence analysis.

    abstract::Using a DNA probe from an avian transforming virus, NK24, that contains the fos gene and that was newly isolated and characterized (M. Nishizawa, N. Goto, and S. Kawai, J. Virol. 61:3733-3740, 1987), we cloned and sequenced the chicken c-fos gene. Results showed that this gene, like the mouse or human c-fos gene, cont...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.12.4012-4018.1987

    authors: Fujiwara KT,Ashida K,Nishina H,Iba H,Miyajima N,Nishizawa M,Kawai S

    更新日期:1987-12-01 00:00:00

  • Mechanical Barriers Restrict Invasion of Herpes Simplex Virus 1 into Human Oral Mucosa.

    abstract::Oral mucosa is one of the main target tissues of the human pathogen herpes simplex virus 1 (HSV-1). How the virus overcomes the protective epithelial barriers and penetrates the tissue to reach its receptors and initiate infection is still unclear. Here, we established an ex vivo infection assay with human oral mucosa...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01295-17

    authors: Thier K,Petermann P,Rahn E,Rothamel D,Bloch W,Knebel-Mörsdorf D

    更新日期:2017-10-27 00:00:00

  • Lower Respiratory Tract Infection of the Ferret by 2009 H1N1 Pandemic Influenza A Virus Triggers Biphasic, Systemic, and Local Recruitment of Neutrophils.

    abstract:UNLABELLED:Infection of the lower respiratory tract by influenza A viruses results in increases in inflammation and immune cell infiltration in the lung. The dynamic relationships among the lung microenvironments, the lung, and systemic host responses during infection remain poorly understood. Here we used extensive sy...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00817-15

    authors: Camp JV,Bagci U,Chu YK,Squier B,Fraig M,Uriarte SM,Guo H,Mollura DJ,Jonsson CB

    更新日期:2015-09-01 00:00:00

  • Simian varicella virus expresses a latency-associated transcript that is antisense to open reading frame 61 (ICP0) mRNA in neural ganglia of latently infected monkeys.

    abstract::Simian varicella virus (SVV) and varicella-zoster virus (VZV) are closely related alphaherpesviruses that cause varicella (chickenpox) in nonhuman primates and humans, respectively. After resolution of the primary disease, SVV and VZV establish latent infection of neural ganglia and may later reactivate to cause a sec...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00407-07

    authors: Ou Y,Davis KA,Traina-Dorge V,Gray WL

    更新日期:2007-08-01 00:00:00

  • HTLV-1 tax-induced rapid senescence is driven by the transcriptional activity of NF-κB and depends on chronically activated IKKα and p65/RelA.

    abstract::The HTLV-1 oncoprotein Tax is a potent activator of classical and alternative NF-κB pathways and is thought to promote cell proliferation and transformation via NF-κB activation. We showed recently that hyperactivation of NF-κB by Tax triggers a cellular senescence response (H. Zhi et al., PLoS Pathog. 7:e1002025, 201...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00158-12

    authors: Ho YK,Zhi H,DeBiaso D,Philip S,Shih HM,Giam CZ

    更新日期:2012-09-01 00:00:00

  • ORF73 of herpesvirus saimiri, a viral homolog of Kaposi's sarcoma-associated herpesvirus, modulates the two cellular tumor suppressor proteins p53 and pRb.

    abstract::All known DNA tumor viruses are known to target and inactivate two main cell cycle regulatory proteins, retinoblastoma protein (pRb) and p53. Inactivation of pRb promotes host cell cycle progression into S phase, and inactivation of p53 promotes cell immortalization. The DNA tumor virus Kaposi's sarcoma associated her...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.19.10336-10347.2004

    authors: Borah S,Verma SC,Robertson ES

    更新日期:2004-10-01 00:00:00

  • Structural proteins of equine infectious anemia virus.

    abstract::Equine infectious anemia virus was found to be comprised of fourteen polypeptides of molecular weight ranging from 10,000 to 79,000. Eighty percent of the virion protein was accounted for by five polypeptides, including two non-glycosylated components (p29 and p13) comprising one-half of the virion protein and three g...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.28.3.997-1001.1978

    authors: Cheevers WP,Ackley CM,Crawford TB

    更新日期:1978-12-01 00:00:00

  • Addition of extra DNA sequences to simian virus 40 DNA in vivo.

    abstract::The possible addition of extra sequences to simian virus 40 (SV40) DNA was analyzed by electron microscopy in two different cell systems, productively infected monkey cells and activated heterokaryons on monkey and transformed mouse 3T3 cells. We found that the closed circular DNA fraction, extracted from monkey cells...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.23.2.323-337.1977

    authors: Yoshike K,Defendi V

    更新日期:1977-08-01 00:00:00

  • ICP0 is required for efficient reactivation of herpes simplex virus type 1 from neuronal latency.

    abstract::Relative to wild-type herpes simplex virus type 1 (HSV-1), ICP0-null mutant viruses reactivate inefficiently from explanted, latently infected mouse trigeminal ganglia (TG), indicating that ICP0 is not essential for reactivation but plays a central role in enhancing the efficiency of reactivation. The validity of thes...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.7.3240-3249.2001

    authors: Halford WP,Schaffer PA

    更新日期:2001-04-01 00:00:00

  • The intranuclear location of simian virus 40 polypeptides VP2 and VP3 depends on a specific amino acid sequence.

    abstract::A cDNA fragment coding for poliovirus capsid polypeptide VP1 was inserted into a simian virus 40 (SV40) genome in the place of the SV40 VP1 gene and fused in phase to the 3' end of the VP2-VP3 genes. Simian cells were infected with the resulting hybrid virus in the presence of an early SV40 mutant used as a helper. In...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.12.3862-3869.1987

    authors: Wychowski C,Benichou D,Girard M

    更新日期:1987-12-01 00:00:00

  • Na, an autoproteolytic product of the herpes simplex virus type 1 protease, can functionally substitute for the assembly protein ICP35.

    abstract::The herpes simplex virus type 1 (HSV-1) protease and its substrate, the assembly protein ICP35, are involved in virion maturation. Both proteins are encoded by a single open reading frame but are translated independently from 3'-coterminal mRNAs of different sizes and are in frame. The herpesvirus shell assembles arou...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.2.1683-1687.1997

    authors: Robertson BJ,McCann PJ 3rd,Matusick-Kumar L,Preston VG,Gao M

    更新日期:1997-02-01 00:00:00

  • Cloned bacteriophage phi X174 DNA sequence interferes with synthesis of the complementary strand of infecting bacteriophage phi X174.

    abstract::The insertion of a particular phi X DNA sequence in the plasmid pACYC177 strongly decreased the capacity of Escherichia coli cells containing such a plasmid to propagate bacteriophage phi X174. The smallest DNA sequence tested that showed the effect was the HindII fragment R4. This fragment does not code for a complet...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.42.1.1-11.1982

    authors: van der Avoort HG,van Arkel GA,Weisbeek PJ

    更新日期:1982-04-01 00:00:00

  • Altered Rous sarcoma virus Gag polyprotein processing and its effects on particle formation.

    abstract::Proteolytic processing of the Rous sarcoma virus (RSV) Gag precursor was altered in vivo through the introduction of amino acid substitutions into either the polyprotein cleavage junctions or the PR coding sequence. Single amino acid substitutions (V(P2)S and P(P4)G), which are predicted from in vitro peptide substrat...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.3.2083-2091.1997

    authors: Xiang Y,Ridky TW,Krishna NK,Leis J

    更新日期:1997-03-01 00:00:00

  • Coronavirus minus-strand RNA synthesis and effect of cycloheximide on coronavirus RNA synthesis.

    abstract::The temporal sequence of coronavirus plus-strand and minus-strand RNA synthesis was determined in 17CL1 cells infected with the A59 strain of mouse hepatitis virus (MHV). MHV-induced fusion was prevented by keeping the pH of the medium below pH 6.8. This had no effect on the MHV replication cycle, but gave 5- to 10-fo...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.57.1.328-334.1986

    authors: Sawicki SG,Sawicki DL

    更新日期:1986-01-01 00:00:00

  • Effect of immune priming on Borna disease.

    abstract::Borna disease virus (BDV) is a neurotropic virus with a broad host and geographic range. Lewis rats were immunized against BDV with a recombinant vaccinia virus expressing the BDV nucleoprotein and were later infected with BDV to evaluate protection against Borna disease (BD). Relative to animals that were not immuniz...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.3.2541-2546.1999

    authors: Lewis AJ,Whitton JL,Hatalski CG,Weissenböck H,Lipkin WI

    更新日期:1999-03-01 00:00:00

  • Vaccine protection against simian immunodeficiency virus in monkeys using recombinant gamma-2 herpesvirus.

    abstract::Recombinant strains of replication-competent rhesus monkey rhadinovirus (RRV) were constructed in which strong promoter/enhancer elements were used to drive expression of simian immunodeficiency virus (SIV) Env or Gag or a Rev-Tat-Nef fusion protein. Cultured rhesus monkey fibroblasts infected with each recombinant st...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00865-11

    authors: Bilello JP,Manrique JM,Shin YC,Lauer W,Li W,Lifson JD,Mansfield KG,Johnson RP,Desrosiers RC

    更新日期:2011-12-01 00:00:00

  • Vaccinia virus replication and cytopathic effect in cultures in phytohemagglutinin-treated human peripheral blood leukocytes.

    abstract::Titers of vaccinia virus consistently increased in cultures of washed phytohemagglutinin-treated, peripheral blood leukocytes of a vaccinated adult. Concomitantly, a gradual rise occurred in the numbers of infected leukocytes, as determined by the infective center assay. Increase in viral titer was accompanied by cell...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.2.8.787-792.1968

    authors: Miller G,Enders JF

    更新日期:1968-08-01 00:00:00

  • Structural analysis of determinants of histo-blood group antigen binding specificity in genogroup I noroviruses.

    abstract:UNLABELLED:Human noroviruses (NoVs) cause acute epidemic gastroenteritis. Susceptibility to the majority of NoV infections is determined by genetically controlled secretor-dependent expression of histo-blood group antigens (HBGAs), which are also critical for NoV attachment to host cells. Human NoVs are classified into...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00201-14

    authors: Shanker S,Czako R,Sankaran B,Atmar RL,Estes MK,Prasad BV

    更新日期:2014-06-01 00:00:00

  • Chromatographic Separation and Antigenic Analysis of Proteins of the Oncornaviruses IV. Biochemical Typing of Murine Viral Proteins.

    abstract::Tryptic peptide maps were prepared for four purified structural proteins derived from several murine leukemia viruses (MuLV's). Analyses of these peptide maps reveal that the p30 proteins of Rauscher, Moloney, and Gross MuLV's are very similar to each other, as are the p10's obtained from these three viruses. In contr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.15.5.1148-1157.1975

    authors: Buchhagen DL,Stutman O,Fleissner E

    更新日期:1975-05-01 00:00:00

  • A Polyamide Inhibits Replication of Vesicular Stomatitis Virus by Targeting RNA in the Nucleocapsid.

    abstract::Polyamides have been shown to bind double-stranded DNA by complementing the curvature of the minor groove and forming various hydrogen bonds with DNA. Several polyamide molecules have been found to have potent antiviral activities against papillomavirus, a double-stranded DNA virus. By analogy, we reason that polyamid...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00146-18

    authors: Gumpper RH,Li W,Castañeda CH,Scuderi MJ,Bashkin JK,Luo M

    更新日期:2018-03-28 00:00:00

  • Suppression of the translation defect phenotype specific for a virus-associated RNA-deficient adenovirus mutant in monkey cells by simian virus 40.

    abstract::Human cells infected with adenovirus type 2 (Ad2) or Ad5 require VAI RNA for efficient translation of viral mRNAs at late times after infection. The Ad5 mutant dl-sub720 synthesized neither virus-associated I (VAI) nor VAII RNAs, and infection of human cells with this mutant resulted in reduced virion polypeptide synt...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.60.2.363-368.1986

    authors: Subramanian S,Bhat RA,Rundell MK,Thimmappaya B

    更新日期:1986-11-01 00:00:00

  • Full-Length Glycosylated Gag of Murine Leukemia Virus Can Associate with the Viral Envelope as a Type I Integral Membrane Protein.

    abstract::The glycosylated Gag protein (gPr80) of murine leukemia viruses (MLVs) has been shown to exhibit multiple roles in facilitating retrovirus release, infection, and resistance to host-encoded retroviral restriction factors, such as APOBEC3, SERINC3, and SERINC5. One way in which gPr80 helps MLVs to escape host innate im...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01530-17

    authors: Renner TM,Bélanger K,Lam C,Gerpe MCR,McBane JE,Langlois MA

    更新日期:2018-02-26 00:00:00

  • Host microRNA regulation of human cytomegalovirus immediate early protein translation promotes viral latency.

    abstract:UNLABELLED:Reactivation of human cytomegalovirus (HCMV) is a significant cause of disease and death in immunocompromised patients, underscoring the need to understand how latency is controlled. Here we demonstrate that HCMV has evolved to utilize cellular microRNAs (miRNAs) in cells that promote latency to regulate exp...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00481-14

    authors: O'Connor CM,Vanicek J,Murphy EA

    更新日期:2014-05-01 00:00:00

  • Porcine reproductive and respiratory syndrome virus nonstructural protein 1beta modulates host innate immune response by antagonizing IRF3 activation.

    abstract::Porcine reproductive and respiratory syndrome virus (PRRSV) infection of swine leads to a serious disease characterized by a delayed and defective adaptive immune response. It is hypothesized that a suboptimal innate immune response is responsible for the disease pathogenesis. In the study presented here we tested thi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01326-09

    authors: Beura LK,Sarkar SN,Kwon B,Subramaniam S,Jones C,Pattnaik AK,Osorio FA

    更新日期:2010-02-01 00:00:00