Assessment of protein reorientational diffusion in solution by 13C off-resonance rotating frame spin-lattice relaxation: effect of anisotropic tumbling.

Abstract:

:The 13C off-resonance rotating frame spin-lattice relaxation technique is applicable to the study of protein rotational diffusion behavior in a variety of experimental situations. The original formalism of James and co-workers (1978) (J. Amer. Chem. Soc. 100, 3590-3594) was constrained by the assumption of random isotropic reorientational motion. Here we include in the formalism anisotropic tumbling, and present the results of computer simulations illustrating the differences between anisotropic and isotropic reorientational motion for the off-resonance rotating frame spin-lattice relaxation experiment. In addition, we have included chemical shift anisotropy of the peptide carbonyl carbon as an additional relaxation mechanism contribution, to permit high-field nmr protein rotational diffusion measurements.

journal_name

Biopolymers

journal_title

Biopolymers

authors

Morgan CF,Schleich T,Caines GH,Michael D

doi

10.1002/bip.360290302

subject

Has Abstract

pub_date

1990-02-15 00:00:00

pages

469-80

issue

3

eissn

0006-3525

issn

1097-0282

journal_volume

29

pub_type

杂志文章
  • Quantum yield for preferential photodimerization in long pyrimidine tracts.

    abstract::The quantum yield for cyclobutyl-pyrimidine dimerization in DNA has been observed to increase approximately linearly with increasing pyrimidine tract length. A model without adjustable parameters for this yield is proposed based on energy delocalization, vibronic symmetry switching, and saturation statistics that desc...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360320108

    authors: Texter J

    更新日期:1992-01-01 00:00:00

  • Analysis of structural changes in permanent waved human hair using Raman spectroscopy.

    abstract::To investigate the mechanism leading to the reduction in tensile strength of permanent waved human hair, the structure of cross-sections at various depths of permanent waved white human hair was directly analyzed without isolating the cuticle and cortex, using Raman spectroscopy. The beta-sheet and/or random coil cont...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20646

    authors: Kuzuhara A

    更新日期:2007-02-15 00:00:00

  • A molecular simulation picture of DNA hydration around A- and B-DNA.

    abstract::Recent results from molecular dynamics (MD) simulations on hydration of DNA with respect to conformation are reviewed and compared with experimental data. MD simulations of explicit solvent around DNA can now give a detailed model of DNA that not only matches well with the experimental data but provides additional ins...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(1998)48:4<199::AID-BIP2>3.

    authors: Feig M,Pettitt BM

    更新日期:1998-01-01 00:00:00

  • Peptide contour length determines equilibrium secondary structure in protein-analogous micelles.

    abstract::This work advances bottom-up design of bioinspired materials built from peptide-amphiphiles, which are a class of bioconjugates in which a biofunctional peptide is covalently attached to a hydrophobic moiety that drives self-assembly in aqueous solution. Specifically, this work highlights the importance of peptide con...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22217

    authors: Marullo R,Kastantin M,Drews LB,Tirrell M

    更新日期:2013-09-01 00:00:00

  • Nondestructive FTIR monitoring of leaf senescence and elicitin-induced changes in plant leaves.

    abstract::The applicability of the FTIR attenuated total reflectance technique for in situ monitoring of plant physiological processes such as leaf senescence and aging has been examined. Difference spectra obtained by subtracting the spectrum of the young plant leaf from that of the older one revealed positive bands at 1650-15...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10297

    authors: Ivanova DG,Singh BR

    更新日期:2003-01-01 00:00:00

  • Gold nanoparticles crosslinking by peptides and amino acids: A tool for the colorimetric identification of amino acids.

    abstract::Gold nanoparticles are known to aggregate in the presence of proper multifunctional compounds. For those larger than 3 nm, the process can be followed with the naked eye because the surface plasmon absorption band of the particles shifts to longer wavelengths and the solution color changes from red to blue. To exploit...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23111

    authors: Martínez Á,Scrimin P

    更新日期:2018-08-01 00:00:00

  • The impact of interchain hydrogen bonding on β-hairpin stability is readily predicted by molecular dynamics simulation.

    abstract::Peptides are frequently used model systems for protein folding. They are also gaining increased importance as therapeutics. Here, the ability of molecular dynamics (MD) simulation for describing the structure and dynamics of β-hairpin peptides was investigated, with special attention given to the impact of a single in...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22671

    authors: Niebling S,Danelius E,Brath U,Westenhoff S,Erdélyi M

    更新日期:2015-11-01 00:00:00

  • Orthogonal protecting groups for N(alpha)-amino and C-terminal carboxyl functions in solid-phase peptide synthesis.

    abstract::For the controlled synthesis of even the simplest dipeptide, the N(alpha)-amino group of one of the amino acids and the C-terminal carboxyl group of the other should both be blocked with suitable protecting groups. Formation of the desired amide bond can now occur upon activation of the free carboxyl group. After coup...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/1097-0282(2000)55:2<123::AID-BIP30>3.0.CO;

    authors: Albericio F

    更新日期:2000-01-01 00:00:00

  • The protein arginine deiminases: Structure, function, inhibition, and disease.

    abstract::The post-translational modification of histones has significant effects on overall chromatin function. One such modification is citrullination, which is catalyzed by the protein arginine deiminases (PADs), a unique family of enzymes that catalyzes the hydrolysis of peptidyl-arginine to form peptidyl-citrulline on hist...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22127

    authors: Bicker KL,Thompson PR

    更新日期:2013-02-01 00:00:00

  • CD and fluorescence studies of the human granulocyte-macrophage colony-stimulating factor and related peptide conformations in aqueous solution.

    abstract::The absorption, CD, and fluorescence emission spectra, and the fluorescence emission and depolarization lifetimes of the human granulocyte-macrophage colony-stimulating factor (hGM-CSF) and related peptides previously tested for their immunological activity, were measured in water at various pHs and temperatures to ob...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360360102

    authors: Casté L,Zandomeneghi M,Houben JL,Rovero P,Pegoraro S,Revoltella PR,Brochon JC

    更新日期:1995-07-01 00:00:00

  • Formation of structured polymers upon controlled denaturation of beta-lactoglobulin with different chaotropes.

    abstract::Prolonged exposure (>90 days) of bovine beta-lactoglobulin (BLG) to subdenaturing concentrations of either urea or potassium thiocyanate resulted in the formation of ordered polymers in the form of fibrils. The fibrils obtained with each chaotrope showed major differences in morphology, surface properties, thiol acces...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20704

    authors: Rasmussen P,Barbiroli A,Bonomi F,Faoro F,Ferranti P,Iriti M,Picariello G,Iametti S

    更新日期:2007-05-01 00:00:00

  • Surveying a local fitness landscape of a protein with epistatic sites for the study of directed evolution.

    abstract::We present a method for analysis of a fitness landscape of a biopolymer with significantly epistatic sites. The analysis is based on a quasi-additive fitness model. The fitness model is constructed with additive terms conducted by "site-fitness" and epistatic terms conducted by "pair-fitness," where the site-fitness i...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10126

    authors: Aita T,Hamamatsu N,Nomiya Y,Uchiyama H,Shibanaka Y,Husimi Y

    更新日期:2002-07-05 00:00:00

  • Cloning and characterization of novel cyclotides genes from South American plants.

    abstract::Cyclotides are multifunctional plant cyclic peptides containing 28-37 amino acid residues and a pattern of three disulfide bridges, forming a motif known as the cyclic cystine knot. Due to their high biotechnological potential, the sequencing and characterization of cyclotide genes are crucial not only for cloning and...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22938

    authors: Cunha NB,Barbosa AE,de Almeida RG,Porto WF,Maximiano MR,Álvares LC,Munhoz CB,Eugênio CU,Viana AA,Franco OL,Dias SC

    更新日期:2016-11-01 00:00:00

  • The TIPP opioid peptide family: development of delta antagonists, delta agonists, and mixed mu agonist/delta antagonists.

    abstract::The discovery of the prototype delta opioid antagonists TIPP (H-Tyr-Tic-Phe-Phe-OH) and TIP (H-Tyr-Tic-Phe-OH) in 1992 was followed by extensive structure-activity relationship studies, leading to the development of analogues that are of interest as pharmacological tools or as potential therapeutic agents. Stable TIPP...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/(SICI)1097-0282(1999)51:6<411::AID-BIP4>3.

    authors: Schiller PW,Weltrowska G,Berezowska I,Nguyen TM,Wilkes BC,Lemieux C,Chung NN

    更新日期:1999-01-01 00:00:00

  • Fluorescence characterization of type I collagen from normal and silicotic rats and its quenching dynamics induced by hypocrellin B.

    abstract::In this paper, we studied the quenching mechanism of intrinsic fluorescence of type I collagen by a new type photosensitizer and fluorescence quencher, hypocrellin B (HB). It was indicated that type I collagen can emit Tyr-intrinsic fluorescence with the excitation wavelength of Tyr (lambda(ex) = 269 nm). Its fluoresc...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(199708)42:2<219::AID-BIP10

    authors: Li YH,Yue JC,Cai GP

    更新日期:1997-08-01 00:00:00

  • PEGylated PAMAM dendrimers loading oxaliplatin with prolonged release and high payload without burst effect.

    abstract::Oxaliplatin (OXA) was coupled to PEGylated polyamidoamine dendrimers of fourth generation (G4-PEG@OXA) in the comparison to PEGylated ones of odd generation (G3.5-PEG@OXA). Proton nuclear magnetic resonance and Fourier-transform infrared spectroscopy were used to confirm the successful incorporation of OXA as well as ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23272

    authors: Ho MN,Bach LG,Nguyen DH,Nguyen CH,Nguyen CK,Tran NQ,Nguyen NV,Hoang Thi TT

    更新日期:2019-07-01 00:00:00

  • The secondary structure of turkey gizzard myosin light chain kinase and the nature of its interaction with calmodulin.

    abstract::The enzymatic activities of native myosin light chain kinases are subject to modification by interaction with Ca2(+)-calmodulin (CaM). The interaction between myosin light chain kinase isolated from turkey gizzard (tgMLCK) and calmodulin isolated from bovine testes (CaMbt) and wheat germ (CaMwg) has been examined by m...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360301113

    authors: Garone L,Albaugh S,Steiner RF

    更新日期:1990-01-01 00:00:00

  • Intermolecular Overhauser effects in fluoroalcohol solutions of cyclo-alanylglycine.

    abstract::Interactions between the diketopiperazine cyclo-alanylglycine and four fluorinated alcohols in water-fluoroalcohol mixtures were examined by (1)H[(19)F] intermolecular nuclear Overhauser effects (NOE) experiments. The alcohols studied were trifluoroethanol, hexafluoroacetone trihydrate, 1,1,1,3,3,3-hexafluoroisopropan...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10176

    authors: Strickler MA,Gerig JT

    更新日期:2002-08-15 00:00:00

  • Biological activity of peptide-conjugated polyion complex matrices consisting of alginate and chitosan.

    abstract::Peptide-conjugated polysaccharide matrices using bioactive laminin-derived peptides are useful biomaterials for tissue and cell engineering. Here, we demonstrate an easy handling preparation method for peptide-polysaccharide matrices using polyion complex with both alginate and chitosan. First, aldehyde-alginate was s...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22983

    authors: Fujimori C,Kumai J,Nakamura K,Gu Y,Katagiri F,Hozumi K,Kikkawa Y,Nomizu M

    更新日期:2017-01-01 00:00:00

  • Orientational order of Australian spider silks as determined by solid-state NMR.

    abstract::A simple solid-state NMR method was used to study the structure of (13)C- and (15)N-enriched silk from two Australian orb-web spider species, Nephila edulis and Argiope keyserlingi. Carbon-13 and (15)N spectra from alanine- or glycine-labeled oriented dragline silks were acquired with the fiber axis aligned parallel o...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20471

    authors: Bonev B,Grieve S,Herberstein ME,Kishore AI,Watts A,Separovic F

    更新日期:2006-06-05 00:00:00

  • Cyclic retro-inverso dipeptides with two aromatic side chains. I. Synthesis.

    abstract::A series of cyclic retro-inverso dipeptides--2-[(4-hydroxy)benzyl]-5-benzyl-4,6(1H,2H,3H,5H)-pyrimidinedi one (c[mPhe-gTyr]), 2-benzyl-5-[(4-hydroxy)benzyl]-4,6(1H,2H,3H,5H)-pyrimidinedione (c[mTyr-gPhe]), and 2-benzyl-5-amino-5-[(4-hydroxy)benzyl]-4,6(1H,2H,3H,5H)-pyrimidinedione (c[(alpha-amino)mTyr-gPhe])--were syn...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360311307

    authors: Nunami K,Yamazaki T,Goodman M

    更新日期:1991-11-01 00:00:00

  • Tooth enamel protein, amelogenin, has a probable beta-spiral internal channel, Gln112-Leu138, within a single polypeptide chain: preliminary molecular mechanics and dynamics studies.

    abstract::Molecular dynamics simulation, with backbone constraints for 20 ps of equilibration and simulation, of a repeating polypeptide segment, Gln-Pro-His-Gln-Pro-Leu-Gln-Pro-His-Gln-Pro-Leu-Gln-Pro-Met-(Gln-Pro-Leu )4, constituting residues 112-138 of bovine amelolgenin, a 19.35 kD hydrophobic protein, are discussed. It is ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360280130

    authors: Renugopalakrishnan V,Pattabiraman N,Prabhakaran M,Strawich E,Glimcher MJ

    更新日期:1989-01-01 00:00:00

  • Conformational and binding properties of chicken liver basic fatty acid binding protein in solution.

    abstract::The conformation of basic fatty acid binding protein from chicken liver and the binding properties of the apo protein toward 11-dansylamino-undecanoic acid were investigated by CD and fluorescence spectroscopy. In one set of experiments the binding process was followed by the appearance of induced optical activity in ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360340707

    authors: Schievano E,Quarzago D,Spadon P,Monaco HL,Zanotti G,Peggion E

    更新日期:1994-07-01 00:00:00

  • Expression and characterization of chimeric spidroins from flagelliform-aciniform repetitive modules.

    abstract::Spiders can produce up to seven different types of silks or glues with different mechanical properties. Of these, flagelliform (Flag) silk is the most elastic, and aciniform (AcSp1) silk is the toughest. To produce a chimeric spider silk (spidroin) FlagR -AcSp1R , we fused one repetitive module of flagelliform silk fr...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23404

    authors: Tian LY,Meng Q,Lin Y

    更新日期:2020-12-01 00:00:00

  • Review: The ATPase mechanism of myosin and actomyosin.

    abstract::Myosins are a large family of molecular motors that use the common P-loop, Switch 1 and Switch 2 nucleotide binding motifs to recognize ATP, to create a catalytic site than can efficiently hydrolyze ATP and to communicate the state of the nucleotide pocket to other allosteric binding sites on myosin. The energy of ATP...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22853

    authors: Geeves MA

    更新日期:2016-08-01 00:00:00

  • Chemical strategies to understand the language of ubiquitin signaling.

    abstract::Ubiquitin (Ub) is a small 76 amino acid long protein that is highly conserved in all eukaryotes studied to date. In humans, more than 600 ligases are involved in the reversible modification of specific lysine side-chain amines in substrate proteins by conjugation with the C-terminal carboxylate of Ub. Initially monoub...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22253

    authors: Weller CE,Pilkerton ME,Chatterjee C

    更新日期:2014-02-01 00:00:00

  • Reactive oxygen species responsive nanoplatforms as smart drug delivery systems for gastrointestinal tract targeting.

    abstract::The pharmacological therapy for gastrointestinal (GI) diseases, such as inflammatory bowel diseases, continues to present challenges in targeting efficacy. The need for maximal local drug exposure at the inflamed regions of the GI tract has led research to focus on a disease-targeted drug delivery approach. Smart nano...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.23336

    authors: Bertoni S,Machness A,Tiboni M,Bártolo R,Santos HA

    更新日期:2020-01-01 00:00:00

  • From natural to synthetic multisite thrombin inhibitors.

    abstract::A large number of potent and selective therapeutic agents, useful for the treatment of several diseases, have been isolated from natural sources. For example, the most active thrombin inhibitors are those secreted by the salivary glands of leeches. One peculiar feature of these agents is the lack of any significant in...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(1999)51:1<19::AID-BIP4>3.0

    authors: Lombardi A,De Simone G,Galdiero S,Staiano N,Nastri F,Pavone V

    更新日期:1999-01-01 00:00:00

  • Resolution of Trp near UV CD spectra of calmodulin-domain peptide complexes into the 1La and 1Lb component spectra.

    abstract::Near uv CD spectra of Trp residues in proteins frequently show a complex line shape deriving from the overlap of 1La and 1Lb electronic transitions. This study presents an original empirical method of resolving these components, based on the near uv CD spectra of well-defined complexes of calmodulin domains with targe...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(199806)45:7<493::AID-BIP3>

    authors: Barth A,Martin SR,Bayley PM

    更新日期:1998-06-01 00:00:00

  • Fibrillar peptide gels in biotechnology and biomedicine.

    abstract::Peptides, peptidomimetics, and peptide derivatives that self-assemble into fibrillar gels have received increasing interest as synthetic extracellular matrices for applications in 3D cell culture and regenerative medicine. Recently, several of these fibrillizing molecules have been functionalized with bioactive compon...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.21326

    authors: Jung JP,Gasiorowski JZ,Collier JH

    更新日期:2010-01-01 00:00:00