Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation.

Abstract:

:A hallmark of the biofilm architecture is the presence of microcolonies. However, little is known about the underlying mechanisms governing microcolony formation. In the pathogen Pseudomonas aeruginosa, microcolony formation is dependent on the two-component regulator MifR, with mifR mutant biofilms exhibiting an overall thin structure lacking microcolonies, and overexpression of mifR resulting in hyper-microcolony formation. Using global transcriptomic and proteomic approaches, we demonstrate that microcolony formation is associated with stressful, oxygen-limiting but electron-rich conditions, as indicated by the activation of stress response mechanisms and anaerobic and fermentative processes, in particular pyruvate fermentation. Inactivation of genes involved in pyruvate utilization including uspK, acnA and ldhA abrogated microcolony formation in a manner similar to mifR inactivation. Moreover, depletion of pyruvate from the growth medium impaired biofilm and microcolony formation, while addition of pyruvate significantly increased microcolony formation. Addition of pyruvate to or expression of mifR in lactate dehydrogenase (ldhA) mutant biofilms did not restore microcolony formation, while addition of pyruvate partly restored microcolony formation in mifR mutant biofilms. In contrast, expression of ldhA in mifR::Mar fully restored microcolony formation by this mutant strain. Our findings indicate the fermentative utilization of pyruvate to be a microcolony-specific adaptation of the P. aeruginosa biofilm environment.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Petrova OE,Schurr JR,Schurr MJ,Sauer K

doi

10.1111/mmi.12018

subject

Has Abstract

pub_date

2012-11-01 00:00:00

pages

819-35

issue

4

eissn

0950-382X

issn

1365-2958

journal_volume

86

pub_type

杂志文章
  • The metabolic regulator CodY links Listeria monocytogenes metabolism to virulence by directly activating the virulence regulatory gene prfA.

    abstract::Metabolic adaptations are critical to the ability of bacterial pathogens to grow within host cells and are normally preceded by sensing of host-specific metabolic signals, which in turn can influence the pathogen's virulence state. Previously, we reported that the intracellular bacterial pathogen Listeria monocytogene...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12890

    authors: Lobel L,Sigal N,Borovok I,Belitsky BR,Sonenshein AL,Herskovits AA

    更新日期:2015-02-01 00:00:00

  • Species- and C-terminal linker-dependent variations in the dynamic behavior of FtsZ on membranes in vitro.

    abstract::Bacterial cell division requires the assembly of FtsZ protofilaments into a dynamic structure called the 'Z-ring'. The Z-ring recruits the division machinery and directs local cell wall remodeling for constriction. The organization and dynamics of protofilaments within the Z-ring coordinate local cell wall synthesis d...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14081

    authors: Sundararajan K,Vecchiarelli A,Mizuuchi K,Goley ED

    更新日期:2018-10-01 00:00:00

  • Identification of the pH-inducible, proton-translocating F1F0-ATPase (atpBEFHAGDC) operon of Lactobacillus acidophilus by differential display: gene structure, cloning and characterization.

    abstract::The influence of low pH on inducible gene expression in Lactobacillus acidophilus was investigated by the use of differential display. Logarithmic phase cultures were exposed to pH 3.5 for various intervals, and RNA was isolated and reverse transcribed. The resultant cDNAs were subjected to PCR and the products were r...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01557.x

    authors: Kullen MJ,Klaenhammer TR

    更新日期:1999-09-01 00:00:00

  • The aspartate chemoreceptor Tar is effectively methylated by binding to the methyltransferase mainly through hydrophobic interaction.

    abstract::In the chemotaxis of Escherichia coli, adaptation requires the methylation and demethylation of transmembrane receptors, which are catalysed by the methyltransferase CheR and the methylesterase CheB respectively. CheR binds to major chemoreceptors through their C-terminal motif NWETF, which is distinct from the methyl...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2000.01834.x

    authors: Shiomi D,Okumura H,Homma M,Kawagishi I

    更新日期:2000-04-01 00:00:00

  • Protected environments allow parallel evolution of a bacterial pathogen in a patient subjected to long-term antibiotic therapy.

    abstract::Long-term antibiotic treatment offers a rare opportunity to study the evolution of bacteria within the same individual. The appearance of new variants has been suggested to take place via the selection of enhanced resistance in compartments of the body in which the antibiotic concentration is low. Laboratory models of...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2001.02647.x

    authors: Low AS,MacKenzie FM,Gould IM,Booth IR

    更新日期:2001-11-01 00:00:00

  • PTS phosphorylation of Mga modulates regulon expression and virulence in the group A streptococcus.

    abstract::The ability of a bacterial pathogen to monitor available carbon sources in host tissues provides a clear fitness advantage. In the group A streptococcus (GAS), the virulence regulator Mga contains homology to phosphotransferase system (PTS) regulatory domains (PRDs) found in sugar operon regulators. Here we show that ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12250

    authors: Hondorp ER,Hou SC,Hause LL,Gera K,Lee CE,McIver KS

    更新日期:2013-06-01 00:00:00

  • Identification of novel hrp-regulated genes through functional genomic analysis of the Pseudomonas syringae pv. tomato DC3000 genome.

    abstract::Pseudomonas syringae pv. tomato (Pst) strain DC3000 infects the model plants Arabidopsis thaliana and tomato, causing disease symptoms characterized by necrotic lesions surrounded by chlorosis. One mechanism used by Pst DC3000 to infect host plants is the type III protein secretion system, which is thought to deliver ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.02964.x

    authors: Zwiesler-Vollick J,Plovanich-Jones AE,Nomura K,Bandyopadhyay S,Joardar V,Kunkel BN,He SY

    更新日期:2002-09-01 00:00:00

  • Expression and regulation of the Pseudomonas aeruginosa hibernation promoting factor.

    abstract::Bacterial biofilms contain subpopulations of cells that are dormant and highly tolerant to antibiotics. While dormant, the bacteria must maintain the integrity of macromolecules required for resuscitation. Previously, we showed that hibernation promoting factor (HPF) is essential for protecting Pseudomonas aeruginosa ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14001

    authors: Akiyama T,Williamson KS,Franklin MJ

    更新日期:2018-10-01 00:00:00

  • Regulated expression of the dinR and recA genes during competence development and SOS induction in Bacillus subtilis.

    abstract::It has been hypothesized that the dinR gene product of Bacillus subtilis acts as a repressor of the SOS regulon by binding to DNA sequences located upstream of SOS genes, including dinR and recA. Following activation as a result of DNA damage, RecA is believed to catalyse DinR-autocleavage, thus derepressing the SOS r...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1996.tb02657.x

    authors: Haijema BJ,van Sinderen D,Winterling K,Kooistra J,Venema G,Hamoen LW

    更新日期:1996-10-01 00:00:00

  • A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome.

    abstract::There is a DNA sequence which has unusually high affinity for the DnaA protein of Escherichia coli between the glyV and amiB-mutL operons at 94.7 min on the genetic map. Affinity of DnaA protein for DNA was measured in vivo as the activity of beta-galactosidase produced from the lacZ gene on a plasmid fused to the 5'-...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1996.453983.x

    authors: Kitagawa R,Mitsuki H,Okazaki T,Ogawa T

    更新日期:1996-03-01 00:00:00

  • The com locus controls genetic transformation in Streptococcus pneumoniae.

    abstract::Genetic exchange by natural transformation in Streptococcus pneumoniae occurs in a cell-density dependent process and is initiated by a small extracellular signalling molecule, the competence-stimulating peptide (CSP). comC, the gene for this peptide, has previously been identified and encodes a 44 amino acid pre-pept...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1997.2481617.x

    authors: Cheng Q,Campbell EA,Naughton AM,Johnson S,Masure HR

    更新日期:1997-02-01 00:00:00

  • Autoregulation of ZEB2 expression for zearalenone production in Fusarium graminearum.

    abstract::Several Fusarium species produce the polyketide mycotoxin zearalenone (ZEA), a causative agent of hyperestrogenic syndrome in animals that is often found in F. graminearum-infected cereals in temperate regions. The ZEA biosynthetic cluster genes PKS4, PKS13, ZEB1 and ZEB2 encode a reducing polyketide synthase, a non-r...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13078

    authors: Park AR,Son H,Min K,Park J,Goo JH,Rhee S,Chae SK,Lee YW

    更新日期:2015-09-01 00:00:00

  • Secondary metabolic gene cluster silencing in Aspergillus nidulans.

    abstract::In contrast to most primary metabolism genes, the genes involved in secondary metabolism and certain nutrient utilization pathways are clustered in fungi. Recently a nuclear protein, LaeA, was found to be required for the transcription of several secondary metabolite gene clusters in Aspergillus nidulans. Here we show...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2006.05330.x

    authors: Bok JW,Noordermeer D,Kale SP,Keller NP

    更新日期:2006-09-01 00:00:00

  • Differences in two Pseudomonas aeruginosa cbb3 cytochrome oxidases.

    abstract::Bacterial cytochrome cbb3 oxidases are members of the haeme-copper oxidase superfamily that are important for energy conservation by a variety of proteobacteria under oxygen-limiting conditions. The opportunistic pathogen Pseudomonas aeruginosa is unusual in possessing two operons that each potentially encode a cbb3 o...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03904.x

    authors: Comolli JC,Donohue TJ

    更新日期:2004-02-01 00:00:00

  • Multicopy plasmid instability: the dimer catastrophe hypothesis.

    abstract::Multimer formation reduces plasmid copy number and is an established cause of segregational instability. Nevertheless, it is difficult to rationalize observations that low levels of dimers can cause severe instability, if we assume they are distributed evenly in cell populations. We report here that dimer distribution...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01648.x

    authors: Summers DK,Beton CW,Withers HL

    更新日期:1993-06-01 00:00:00

  • Cooperative amino acid changes shift the response of the σ⁵⁴-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene.

    abstract::XylR is a σ⁵⁴-dependent transcriptional factor of Pseudomonas putida that activates the Pu promoter of the TOL plasmid upon binding its natural effector, m-xylene. The search for mutants of the signal-sensing module of XylR that respond to the xenobiotic compound 2,4-dinitrotoluene recurrently yields protein variants ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07518.x

    authors: de Las Heras A,de Lorenzo V

    更新日期:2011-03-01 00:00:00

  • A host factor absent from Lactococcus lactis subspecies lactis MG1363 is required for conjugative transposition.

    abstract::In matings between Lactococcus lactis strains, the conjugative transposons Tn916 and Tn919 are found in the chromosome of the transconjugants in the same place as in the chromosome of the donor, indicating that no transposition has occurred. In agreement with this, the frequency of L. lactis transconjugants from intra...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1991.tb01858.x

    authors: Bringel F,Van Alstine GL,Scott JR

    更新日期:1991-12-01 00:00:00

  • Competitive activation of the Escherichia coli argO gene coding for an arginine exporter by the transcriptional regulators Lrp and ArgP.

    abstract::In vivo and in vitro analyses indicate that transcription of the argO gene coding for an arginine exporter is regulated by the global transcriptional regulator Lrp, an effect that went by unnoticed in previous genome-scale screenings of the Lrp regulatory network in Escherichia coli. Lrp activates the argO promoter fo...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2009.06950.x

    authors: Peeters E,Nguyen Le Minh P,Foulquié-Moreno M,Charlier D

    更新日期:2009-12-01 00:00:00

  • Regulated, sequential processing by multiple proteases is required for proper maturation and release of Bordetella filamentous hemagglutinin.

    abstract::Filamentous hemagglutinin (FHA) is a critically important virulence factor produced by Bordetella species that cause respiratory infections in humans and other animals. It is also a prototypical member of the widespread two partner secretion (TPS) pathway family of proteins. First synthesized as a ~370 kDa protein cal...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14318

    authors: Nash ZM,Cotter PA

    更新日期:2019-09-01 00:00:00

  • Control of cell shape and elongation by the rodA gene in Bacillus subtilis.

    abstract::The Escherichia coli rodA and ftsW genes and the spoVE gene of Bacillus subtilis encode membrane proteins that control peptidoglycan synthesis during cellular elongation, division and sporulation respectively. While rodA and ftsW are essential genes in E. coli, the B. subtilis spoVE gene is dispensable for growth and ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.00766.x

    authors: Henriques AO,Glaser P,Piggot PJ,Moran CP Jr

    更新日期:1998-04-01 00:00:00

  • FbpA, a novel multifunctional Listeria monocytogenes virulence factor.

    abstract::Listeria monocytogenes is a Gram-positive intracellular bacterium responsible for severe opportunistic infections in humans and animals. Signature-tagged mutagenesis (STM) was used to identify a gene named fbpA, required for efficient liver colonization of mice inoculated intravenously. FbpA was also shown to be requi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04138.x

    authors: Dramsi S,Bourdichon F,Cabanes D,Lecuit M,Fsihi H,Cossart P

    更新日期:2004-07-01 00:00:00

  • Differential transcriptome profiling identifies Plasmodium genes encoding pre-erythrocytic stage-specific proteins.

    abstract::Invasive sporozoite and merozoite stages of malaria parasites that infect mammals enter and subsequently reside in hepatocytes and red blood cells respectively. Each invasive stage may exhibit unique adaptations that allow it to interact with and survive in its distinct host cell environment, and these adaptations are...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2003.03909.x

    authors: Kaiser K,Matuschewski K,Camargo N,Ross J,Kappe SH

    更新日期:2004-03-01 00:00:00

  • Rhomboid proteases in invasion and replication of Apicomplexa.

    abstract::In this issue of Molecular Microbiology, Rugarabamu and colleagues investigate the role of rhomboid proteases responsible for adhesin shedding during invasion of the apicomplexan parasite Toxoplasma gondii. This study, together with several other recent publications, raises new questions about the function of these rh...

    journal_title:Molecular microbiology

    pub_type: 评论,杂志文章

    doi:10.1111/mmi.13032

    authors: Stewart RJ,Tonkin CJ

    更新日期:2015-07-01 00:00:00

  • Ail provides multiple mechanisms of serum resistance to Yersinia pestis.

    abstract::Ail, a multifunctional outer membrane protein of Yersinia pestis, confers cell binding, Yop delivery and serum resistance activities. Resistance to complement proteins in serum is critical for the survival of Y. pestis during the septicemic stage of plague infections. Bacteria employ a variety of tactics to evade the ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14140

    authors: Thomson JJ,Plecha SC,Krukonis ES

    更新日期:2019-01-01 00:00:00

  • McmA-dependent and -independent regulatory systems governing expression of ClrB-regulated cellulase and hemicellulase genes in Aspergillus nidulans.

    abstract::Fungal cellulolytic and hemicellulolytic enzymes are promising tools for industrial hydrolysis of cellulosic biomass; however, the regulatory network underlying their production is not well understood. The recent discovery of the transcriptional activators ClrB and McmA in Aspergillus nidulans implied a novel regulato...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13493

    authors: Li N,Kunitake E,Aoyama M,Ogawa M,Kanamaru K,Kimura M,Koyama Y,Kobayashi T

    更新日期:2016-12-01 00:00:00

  • The sigmaD-dependent transcription of the ywcG gene from Bacillus subtilis is dependent on an excess of glucose and glutamate.

    abstract::We investigated the function and transcriptional regulation of ywcG. The protein is essential for Bacillus subtilis. Biochemical characterization of the protein revealed that it is an FMN-containing NADPH oxidase. ywcG is transcribed throughout the whole life cycle of B. subtilis. The start point of transcription is p...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.00734.x

    authors: Moch C,Schrögel O,Allmansberger R

    更新日期:1998-03-01 00:00:00

  • Identification and characterization of narQ, a second nitrate sensor for nitrate-dependent gene regulation in Escherichia coli.

    abstract::In response to nitrate availability, Escherichia coli regulates the synthesis of a number of enzymes involved in anaerobic respiration and fermentation. When nitrate is present, nitrate reductase (narGHJI) gene expression is induced, while expression of the DMSO/TMAO reductase (dmsABC), fumarate reductase (frdABCD) an...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1992.tb01364.x

    authors: Chiang RC,Cavicchioli R,Gunsalus RP

    更新日期:1992-07-01 00:00:00

  • Differential regulation of antibiotic biosynthesis by DraR-K, a novel two-component system in Streptomyces coelicolor.

    abstract::A novel two-component system (TCS) designated as DraR-K (sco3063/sco3062) was identified to be involved in differential regulation of antibiotic biosynthesis in Streptomyces coelicolor. The S. coelicolor mutants with deletion of either or both of draR and draK exhibited significantly reduced actinorhodin (ACT) but inc...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2012.08126.x

    authors: Yu Z,Zhu H,Dang F,Zhang W,Qin Z,Yang S,Tan H,Lu Y,Jiang W

    更新日期:2012-08-01 00:00:00

  • Effects of tRNA(1Leu) overproduction in Escherichia coli.

    abstract::Strains of Escherichia coli have been produced which express very high levels of the tRNA(1Leu) isoacceptor. This was accomplished by transforming cells with plasmids containing the leuV operon which encodes three copies of the tRNA(1Leu) gene. Most transformants grew very slowly and exhibited a 15-fold increase in ce...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1993.tb01116.x

    authors: Wahab SZ,Rowley KO,Holmes WM

    更新日期:1993-01-01 00:00:00

  • Escherichia coli translocase: the unravelling of a molecular machine.

    abstract::Protein translocation across the bacterial cytoplasmic membrane has been studied extensively in Escherichia coli. The identification of the components involved and subsequent reconstitution of the purified translocation reaction have defined the minimal constituents that allowed extensive biochemical characterization ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1046/j.1365-2958.2000.01980.x

    authors: Manting EH,Driessen AJ

    更新日期:2000-07-01 00:00:00