Abstract:
:One of the challenges in strain improvement by evolutionary engineering is to subsequently determine the molecular basis of the improved properties that were enriched from the natural genetic variation during the selective conditions. This study focuses on Saccharomyces cerevisiae IMS0002 which, after metabolic and evolutionary engineering, ferments the pentose sugar arabinose. Glucose- and arabinose-limited anaerobic chemostat cultures of IMS0002 and its non-evolved ancestor were subjected to transcriptome analysis, intracellular metabolite measurements and metabolic flux analysis. Increased expression of the GAL-regulon and deletion of GAL2 in IMS0002 confirmed that the galactose transporter is essential for growth on arabinose. Elevated intracellular concentrations of pentose-phosphate-pathway intermediates and upregulation of TKL2 and YGR043c (encoding transketolase and transaldolase isoenzymes) suggested an involvement of these genes in flux-controlling reactions in arabinose fermentation. Indeed, deletion of these genes in IMS0002 caused a 21% reduction of the maximum specific growth rate on arabinose.
journal_name
Metab Engjournal_title
Metabolic engineeringauthors
Wisselink HW,Cipollina C,Oud B,Crimi B,Heijnen JJ,Pronk JT,van Maris AJdoi
10.1016/j.ymben.2010.08.003subject
Has Abstractpub_date
2010-11-01 00:00:00pages
537-51issue
6eissn
1096-7176issn
1096-7184pii
S1096-7176(10)00080-7journal_volume
12pub_type
杂志文章abstract::Cyanobacteria hold promise as a cell factory for producing biofuels and bio-derived chemicals, but genome engineering of cyanobacteria such as Synechococcus elongatus PCC 7942 poses challenges because of their oligoploidy nature and long-term instability of the introduced gene. CRISPR-Cas9 is a newly developed RNA-gui...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2016.09.006
更新日期:2016-11-01 00:00:00
abstract::Metabolic engineering is used to improve titers, yields and generation rates for biochemical products in host microbes such as Escherichia coli. A wide range of biochemicals are derived from the central carbon metabolite acetyl-CoA, and the largest native drain of acetyl-CoA in most microbes including E. coli is entry...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2020.06.006
更新日期:2020-09-01 00:00:00
abstract::There is considerable interest in mining organisms for new natural products (NPs) and in improving methods to overproduce valuable NPs. Because of the rapid development of tools and strategies for metabolic engineering and the markedly increased knowledge of the biosynthetic pathways and genetics of NP-producing organ...
journal_title:Metabolic engineering
pub_type: 杂志文章,评审
doi:10.1016/j.ymben.2018.05.015
更新日期:2018-11-01 00:00:00
abstract::Muconic acid (MA) is a dicarboxylic acid used for the production of industrially relevant chemicals such as adipic acid, terephthalic acid, and caprolactam. Because the synthesis of these polymer precursors generates toxic intermediates by utilizing petroleum-derived chemicals and corrosive catalysts, the development ...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2018.02.002
更新日期:2018-03-01 00:00:00
abstract::Isobutanol is a valuable chemical and is considered a new generation biofuel. Construction of isobutanol synthesis pathways in bacteria is a hot topic in isobutanol production. Here, we show that an isobutanol synthesis pathway exists naturally in Klebsiella pneumoniae; however, this pathway is dormant in the wild-typ...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2017.07.003
更新日期:2017-09-01 00:00:00
abstract::Presented herein is a methodology for quantitatively analyzing the complex signaling network by resorting to colored Petri nets (CPN). The mathematical as well as Petri net models for two basic reaction types were established, followed by the extension to a large signal transduction system stimulated by epidermal grow...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2005.10.001
更新日期:2006-03-01 00:00:00
abstract::Pyocyanin is a secondary metabolite from Pseudomonas aeruginosa that belongs to the class of phenazines, which are aromatic nitrogenous compounds with numerous biological functions. Besides its antifungal and antimicrobial activities, pyocyanin is a remarkable redox-active molecule with potential applications ranging ...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2021.01.002
更新日期:2021-01-14 00:00:00
abstract::The chemical monomer p-hydroxystyrene (pHS) is used for producing a number of important industrial polymers from petroleum-based feedstocks. In an alternative approach, the microbial production of pHS can be envisioned by linking together a number of different metabolic pathways, of which those based on using glucose ...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2007.01.002
更新日期:2007-05-01 00:00:00
abstract::The actinomycete Amycolatopsis japonicum is the producer of the chelating compound [S,S]-ethylenediamine-disuccinc acid (EDDS). [S,S]-EDDS is an isomer of ethylenediamine-tetraacetic acid (EDTA), an economically important chelating compound that suffers from an extremely poor degradability. Frequent use of the persist...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2020.04.003
更新日期:2020-07-01 00:00:00
abstract::As synthetic pathways built from exogenous enzymes become more complicated, the probability of encountering undesired interactions with host organisms increases, thereby lowering product titer. An emerging strategy to combat this problem is to spatially organize pathway enzymes into multi-protein complexes, where high...
journal_title:Metabolic engineering
pub_type: 杂志文章,评审
doi:10.1016/j.ymben.2011.09.003
更新日期:2012-05-01 00:00:00
abstract::One of the key drivers for successful metabolic engineering in microbes is the efficacy by which genomes can be edited. As such there are many methods to choose from when aiming to modify genomes, especially those of model organisms like yeast and bacteria. In recent years, clustered regularly interspaced palindromic ...
journal_title:Metabolic engineering
pub_type: 杂志文章,评审
doi:10.1016/j.ymben.2015.12.003
更新日期:2016-03-01 00:00:00
abstract::The metabolic engineering of natural products has begun to prosper in the past few years due to genomic research and the discovery of biosynthetic genes. While the biosynthetic pathways and genes for some isoprenoids have been known for many years, new pathways have been found and known pathways have been further inve...
journal_title:Metabolic engineering
pub_type: 杂志文章,评审
doi:10.1006/mben.2000.0168
更新日期:2001-01-01 00:00:00
abstract::FK506, a widely used immunosuppressant, is produced by industrial fermentation processes using various Streptomyces species. Independently of the strain, structurally related compound FK520 is co-produced, resulting in complex and costly isolation procedures. In this paper, we report a chemobiosynthetic approach for e...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2011.11.003
更新日期:2012-01-01 00:00:00
abstract::A mathematical model to describe carbon catabolite repression in Escherichia coli is developed and in part validated. The model is aggregated from two functional units describing glucose and lactose transport and degradation. Both units are members of the crp modulon and are under control of a global signal transducti...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1006/mben.2001.0199
更新日期:2001-10-01 00:00:00
abstract::The field of Metabolic Engineering has recently undergone a transformation that has led to a rapid expansion of the chemical palate of cells. Now, it is conceivable to produce nearly any organic molecule of interest using a cellular host. Significant advances have been made in the production of biofuels, biopolymers a...
journal_title:Metabolic engineering
pub_type: 杂志文章,评审
doi:10.1016/j.ymben.2012.04.006
更新日期:2012-07-01 00:00:00
abstract::Lipogenic organisms provide an ideal platform for biodiesel and oleochemical production. Through our previous rational metabolic engineering efforts, lipogenesis titers in Yarrowia lipolytica were significantly enhanced. However, the resulting strain still suffered from decreased biomass generation rates. Here, we emp...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2015.02.003
更新日期:2015-05-01 00:00:00
abstract::Anthocyanins are widely distributed, glycosylated, water-soluble plant pigments, which give many fruits and flowers their red, purple or blue colouration. Their beneficial effects in a dietary context have encouraged increasing use of anthocyanins as natural colourants in the food and cosmetic industries. However, the...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2018.06.004
更新日期:2018-07-01 00:00:00
abstract::3-Ketosteroid-△(1)-dehydrogenase (KstD) is a key enzyme involved in the microbial catabolism of sterols. Here, three homologues of KstD were characterized from Mycobacterium neoaurum ATCC 25795, showing distinct substrate preferences and transcriptional responses to steroids. Single deletion of any MN-kstD failed to r...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2014.05.005
更新日期:2014-07-01 00:00:00
abstract::Understanding in vivo regulation of photoautotrophic metabolism is important for identifying strategies to improve photosynthetic efficiency or re-route carbon fluxes to desirable end products. We have developed an approach to reconstruct comprehensive flux maps of photoautotrophic metabolism by computational analysis...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2011.08.002
更新日期:2011-11-01 00:00:00
abstract::A methionine-producing strain was derived from a lysine-producing Corynebacterium glutamicum through a process of genetic manipulation in order to assess its potential to synthesize and accumulate methionine during growth. The strain carries a deregulated hom gene (hom(FBR)) to abolish feedback inhibition of homoserin...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2007.05.001
更新日期:2007-07-01 00:00:00
abstract::Current studies on microbial isoprene biosynthesis have mostly focused on regulation of the upstream mevalonic acid (MVA) or methyl-erythritol-4-phosphate (MEP) pathway. However, the downstream bottleneck restricting isoprene biosynthesis capacity caused by the weak expression and low activity of plant isoprene syntha...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2016.12.011
更新日期:2017-01-01 00:00:00
abstract::Optimizing the productivity of bioengineered strains requires balancing ATP generation and carbon atom conservation through fine-tuning cell respiration and metabolism. Traditional approaches manipulate cell respiration by altering air feeding, which are technically difficult especially in large bioreactors. An approa...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2011.09.006
更新日期:2011-11-01 00:00:00
abstract::Glucose pulse experiments at seconds time scale resolution were performed in aerobic glucose-limited Escherichia coli chemostat cultures. The dynamic responses of oxygen-uptake and growth rate at seconds time scale were determined using a new method based on the dynamic liquid-phase mass balance for oxygen and the pse...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2011.03.003
更新日期:2011-05-01 00:00:00
abstract::Increasing the microbial CO2-fixing efficiency often requires supplying sufficient ATP and redirecting carbon flux for the production of metabolites. However, addressing these two issues concurrently remains a challenge. Here, we present a combinational strategy based on a synergetic CO2-fixing pathway that combines a...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2018.05.007
更新日期:2018-05-01 00:00:00
abstract::Methane is considered a next-generation feedstock, and methanotrophic cell-based biorefinery is attractive for production of a variety of high-value compounds from methane. In this work, we have metabolically engineered Methylomicrobium alcaliphilum 20Z for 2,3-butanediol (2,3-BDO) production from methane. The enginee...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2018.04.010
更新日期:2018-05-01 00:00:00
abstract::An engineered reversal of the β-oxidation cycle (r-BOX) and the fatty acid biosynthesis (FAB) pathway are promising biological platforms for advanced fuel and chemical production in part due to their iterative nature supporting the synthesis of various chain length products. While diverging in their carbon-carbon elon...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2017.11.003
更新日期:2018-01-01 00:00:00
abstract::In this report, we identify the relevant factors to increase production of medium chain n-alcohols through an expanded view of the reverse β-oxidation pathway. We began by creating a base strain capable of producing medium chain n-alcohols from glucose using a redox-balanced and growth-coupled metabolic engineering st...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2018.05.011
更新日期:2018-07-01 00:00:00
abstract::Saccharomyces cerevisiae is an efficient host for natural-compound production and preferentially employed in academic studies and bioindustries. However, S. cerevisiae exhibits limited production capacity for lipophilic natural products, especially compounds that accumulate intracellularly, such as polyketides and car...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2018.11.009
更新日期:2019-03-01 00:00:00
abstract::3-Hydroxypropionic acid (3-HP) is an attractive platform chemical, which can be used to produce a variety of commodity chemicals, such as acrylic acid and acrylamide. For enabling a sustainable alternative to petrochemicals as the feedstock for these commercially important chemicals, fermentative production of 3-HP is...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/j.ymben.2014.01.005
更新日期:2014-03-01 00:00:00
abstract::This paper presents a new mathematical framework for modeling of in vivo dynamics and for metabolic re-design: the linlog approach. This approach is an extension of metabolic control analysis (MCA), valid for large changes of enzyme and metabolite levels. Furthermore, the presented framework combines MCA with kinetic ...
journal_title:Metabolic engineering
pub_type: 杂志文章
doi:10.1016/s1096-7176(03)00025-9
更新日期:2003-07-01 00:00:00