Abstract:
:Analogs of nantenine were docked into a modeled structure of the human 5-HT(2A) receptor using ICM Pro, GLIDE, and GOLD docking methods. The resultant docking scores were used to correlate with observed in vitro apparent affinity (K(e)) data. The GOLD docking algorithm when used with a homology model of 5-HT(2A), based on a bovine rhodopsin template and built by the program MODELLER, gives results which are most in agreement with the in vitro results. Further analysis of the docking poses among members of a C1 alkyl series of nantenine analogs, indicate that they bind to the receptor in a similar orientation, but differently than nantenine. Besides an important interaction between the protonated nitrogen of the C1 alkyl analogs and residue Asp155, we identified Ser242, Phe234, and Gly238 as key residues responsible for the affinity of these compounds for the 5-HT(2A) receptor. Specifically, the ability of some of these analogs to establish a H-bond with Ser242 and hydrophobic interactions with Phe234 and Gly238 appears to explain their enhanced affinity as compared to nantenine.
journal_name
Bioorg Med Chemjournal_title
Bioorganic & medicinal chemistryauthors
Pecic S,Makkar P,Chaudhary S,Reddy BV,Navarro HA,Harding WWdoi
10.1016/j.bmc.2010.06.043subject
Has Abstractpub_date
2010-08-01 00:00:00pages
5562-75issue
15eissn
0968-0896issn
1464-3391pii
S0968-0896(10)00571-7journal_volume
18pub_type
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